FFCP PHASE1:Mm9::chr3:8509552..8509557,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=20257|HGNC=|MCL_coexpression_id=13|UniProt=P55821,Q9CZ46,Q545S4|association_with_transcript=25bp_to_ENSMUST00000029002,ENSMUST00000116348,NM_025285,uc008oon.1,uc008ooo.1_5end|description=CAGE_peak_2_at_Stmn2_5end|id=chr3:8509552..8509557,+|ontology_enrichment_celltype=CL:0000221!6.72e-17!44;CL:0000133!6.72e-17!44;CL:0002319!6.72e-17!43;CL:0000540!4.35e-16!33;CL:0000047!4.35e-16!33;CL:0000031!4.35e-16!33;CL:0000404!4.35e-16!33;CL:0000117!1.57e-14!23;CL:0000337!1.57e-14!23;CL:0000055!3.83e-11!50;CL:0000393!1.72e-10!39;CL:0000211!1.72e-10!39|ontology_enrichment_celltype_v019_2=CL:0000221,7.87e-19,44;CL:0000133,7.87e-19,44;CL:0002319,7.99e-19,43;CL:0000540,1.61e-18,33;CL:0000047,1.61e-18,33;CL:0000031,1.61e-18,33;CL:0000404,1.61e-18,33;CL:0000117,1.06e-16,23;CL:0000337,1.06e-16,23;CL:0000393,2.42e-13,39;CL:0000211,2.42e-13,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.05e-30!73;UBERON:0005743!1.05e-30!73;UBERON:0000073!1.37e-30!75;UBERON:0001016!1.37e-30!75;UBERON:0004121!1.87e-28!102;UBERON:0000924!1.87e-28!102;UBERON:0006601!1.87e-28!102;UBERON:0002346!2.22e-26!71;UBERON:0003075!2.22e-26!71;UBERON:0007284!2.22e-26!71;UBERON:0001049!3.46e-23!52;UBERON:0005068!3.46e-23!52;UBERON:0006241!3.46e-23!52;UBERON:0007135!3.46e-23!52;UBERON:0000033!2.01e-21!63;UBERON:0000955!2.09e-21!50;UBERON:0006238!2.09e-21!50;UBERON:0002020!3.20e-21!34;UBERON:0002616!4.26e-21!49;UBERON:0003056!1.83e-18!49;UBERON:0002791!3.55e-18!29;UBERON:0003528!3.55e-18!29;UBERON:0001893!3.55e-18!29;UBERON:0003080!2.46e-17!40;UBERON:0002780!8.94e-17!39;UBERON:0001890!8.94e-17!39;UBERON:0006240!8.94e-17!39;UBERON:0000956!1.68e-13!21;UBERON:0001869!1.68e-13!21;UBERON:0000203!1.68e-13!21;UBERON:0002619!3.14e-11!17;UBERON:0007811!1.23e-10!86;UBERON:0000153!1.64e-09!94;UBERON:0002021!2.17e-07!10;UBERON:0000411!2.17e-07!10;UBERON:0001950!2.17e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.49e-35,73;UBERON:0001016,8.59e-35,75;UBERON:0002346,3.18e-30,64;UBERON:0003075,3.18e-30,64;UBERON:0007284,3.18e-30,64;UBERON:0004121,2.77e-29,95;UBERON:0000924,2.77e-29,95;UBERON:0006601,2.77e-29,95;UBERON:0000073,2.05e-28,54;UBERON:0001049,3.81e-27,52;UBERON:0005068,3.81e-27,52;UBERON:0006241,3.81e-27,52;UBERON:0007135,3.81e-27,52;UBERON:0010371,1.32e-24,73;UBERON:0002020,1.62e-24,34;UBERON:0000955,3.45e-23,47;UBERON:0006238,3.45e-23,47;UBERON:0002616,7.79e-23,46;UBERON:0003056,2.54e-21,49;UBERON:0003528,5.84e-21,29;UBERON:0002791,5.84e-21,29;UBERON:0001893,5.84e-21,29;UBERON:0003080,5.28e-20,40;UBERON:0002780,2.39e-19,39;UBERON:0001890,2.39e-19,39;UBERON:0006240,2.39e-19,39;UBERON:0010314,3.72e-18,92;UBERON:0000956,1.70e-15,21;UBERON:0001869,1.70e-15,21;UBERON:0000203,1.70e-15,21;UBERON:0002619,7.57e-13,17;UBERON:0002021,2.27e-08,10;UBERON:0000411,2.27e-08,10;UBERON:0001950,2.27e-08,10;UBERON:0003076,1.27e-07,12;UBERON:0003057,1.27e-07,12|phase1_expression=1.92178616525753,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.3577272795174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.494364699762,8.12838876117546,11.665793944457,10.4989816219022,38.8131923785423,0,0,0,0,0,0,19.8270131642406,24.3335850465135,36.7622214033584,3.38844532069132,4.4464739805557,0,0,0.7104801149461,0.299600110518405,1.92109152660777,17.8346133170582,22.0059679480656,21.0324961351382,12.8542942981712,15.0190607847097,23.1507610516263,22.0444583341944,30.3342199581307,13.2139057199266,16.4716666129892,15.2070467923681,25.0583946687368,29.7334841707831,30.7338888628488,18.7052609330925,15.757353080887,16.6550090076723,26.5165726926301,25.3421591822403,28.1463163196204,0.681535739998656,2.87171928405785,0.289864488701678,0,0,0.539703191637817,0,0,1.54488862144927,4.94247935476367,5.19572009205738,4.94675404314476,2.11265129665021,0,0,0,0,0,0.505524445014783,0.5709193985953,2.07150306917737,1.03909497345377,2.77576522825817,5.48037860961854,4.15107895060905,4.06951129492081,3.88042733547826,0.376999773989026,0,0.144599356919912,0,0.161766849947409,0.441683036920787,0.484875253135222,0,39.2326267995473,24.0863712835473,0.766371165625774,0,0,0,18.574039286198,10.980014467647,22.6177833803156,20.3374454624963,13.0414883238469,19.7398642331582,17.1975738851823,2.03678727700633,0.497627882440372,0.505445516867349,1.05220927943237,2.21204753036596,4.82794419310293,5.04173963454978,4.52114453507145,3.74200745332303,5.12454881139399,3.65436725782942,2.84573707812917,0.431135985865684,0.189106080167819,0.351902248327898,0.43839146485515,0,0.696504333044333,0.205782136407943,0.995171334092466,0,0,0,0,0.469052119962192,0.180062061461015,0.23674473558521,0.196764231747404,0.154267112887378,0.232533944750408,0.268273401399619,0.233530684734339,0,0.164167464079095,0.162137619091711,0.292399974850665,0.658650345873152,0.536825675041487,18.2952255250791,31.0771929385439,0,0,1.2797295032114,1.85789337488351,2.83508414908605,2.01683524623343,1.55664630691409,2.28270751335071,0.474529061544512,2.14108641141214,1.75934646160189,1.1937388322469,0.779856348476481,0,0,0,0.569003702859245,1.37098215131675,0,0,0.193952487167626,0.49095073923223,0,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0.372140947668503,0,0,0,0,3.32555742299888,0.757965647081939,0.814824882210129,0.339490171550376,0.469380496577004,0.837531287209079,0.476087281772027,2.34160377429359,2.99506773801763,3.5434350343804,2.71073106717728,1.63863314715738,2.41758974612254,3.03763023021174,0,0,0,0,23.119284958242,19.2227166011213,0,0,7.2566890465739,7.41833614163613,7.53981892064796,1.67278158566786,2.67358408898873,2.54768877709949,6.47697122679831,7.01414058987149,4.34816555741176,5.46246237917072,0.141940085208269,3.73937767701236,1.79175655288934,0,1.32745138339963,0.971122544619926,0.302323556964751,0.565815239267694,0.590603785761546,0.614870295887855,1.55056975900933,0.727067458955011,0.712994756769443,0.316036757935816,0,0,0,4.14140516272013,1.68166288917581,1.28602221018955,0.177340233642274,1.24858172321449,2.79733335023606,1.2178597964584,0.469343416127421,0,0.882113592219848,0.49465875882444,0.968786560175433,0.904693873922338,0.835606408021955,0.164140899745061,0,15.9465759729038,0.341741761595705,0.412773735926445,0.370389054739423,0,0.136694227721025,0,0,0,0,0,1.58167996790568,1.21991680276109,2.80813886136683,1.04544148007234,1.31017538247707,0.809186078308924,1.32245529160537,0.523511883968059,0.388844919875379,0,0,0.149516546043979,0.165458490457098,0.194451188344048,0.129159823477731,0,0.117357238645754,0.13020438484395,0,0,0,0,6.48720688928525,5.23825881540619,2.33857481360031,1.07416017400489,0,0.120195449519969,0.147689527174577,0.100966449948148,0.15241361331,0,0,0,0,0.453460767230423,0,0.269141569828427,1.17519231454855,0.965947970160952,0.187682475451182,0,0.214368379079066,0.501572104035363,38.9678771405776,35.9053684475598,37.2382083735608,40.5573510331103,19.8673930733486,20.3956352295219,15.5255175053315,13.5096360967266,25.8291173120997,16.0505696643064,4.98179268404048,2.79317411380722,5.29274177837816,6.07766792670735,8.17491334249131,4.77993121970037,6.66740183404846,7.82933217507798,5.45562656306086,6.06473308233114,8.87177549615839,8.48818536237343,7.58496210506047,6.78666615491614,5.85841783347255,4.28664322154766,3.70829843023538,5.78727661391115,5.35711671044299,8.24313952752625,6.17164654293748,5.14679837862079,6.91464950847231,6.68593516508711,6.39943786824248,6.59993941555077,6.76833499629258,5.5244639401947,5.97538100921792,2.80571135828869,4.98267076121531,4.23569274214923,6.95692773388472,5.42278944150881,3.2794123866794,7.74412791607632,3.74290573512653,3.65280791882107,3.06061331310149,1.10295709559758,1.39120701372253|short_description=p2@Stmn2}} | ||
|EntrezGene=20257 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|UniProt=P55821,Q9CZ46,Q545S4 | |||
|association_with_transcript=25bp_to_ENSMUST00000029002,ENSMUST00000116348,NM_025285,uc008oon.1,uc008ooo.1_5end | |||
|description=CAGE_peak_2_at_Stmn2_5end | |||
|id=chr3:8509552..8509557,+ | |||
|ontology_enrichment_celltype=CL:0000221!6.72e-17!44;CL:0000133!6.72e-17!44;CL:0002319!6.72e-17!43;CL:0000540!4.35e-16!33;CL:0000047!4.35e-16!33;CL:0000031!4.35e-16!33;CL:0000404!4.35e-16!33;CL:0000117!1.57e-14!23;CL:0000337!1.57e-14!23;CL:0000055!3.83e-11!50;CL:0000393!1.72e-10!39;CL:0000211!1.72e-10!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,7.87e-19,44;CL:0000133,7.87e-19,44;CL:0002319,7.99e-19,43;CL:0000540,1.61e-18,33;CL:0000047,1.61e-18,33;CL:0000031,1.61e-18,33;CL:0000404,1.61e-18,33;CL:0000117,1.06e-16,23;CL:0000337,1.06e-16,23;CL:0000393,2.42e-13,39;CL:0000211,2.42e-13,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.05e-30!73;UBERON:0005743!1.05e-30!73;UBERON:0000073!1.37e-30!75;UBERON:0001016!1.37e-30!75;UBERON:0004121!1.87e-28!102;UBERON:0000924!1.87e-28!102;UBERON:0006601!1.87e-28!102;UBERON:0002346!2.22e-26!71;UBERON:0003075!2.22e-26!71;UBERON:0007284!2.22e-26!71;UBERON:0001049!3.46e-23!52;UBERON:0005068!3.46e-23!52;UBERON:0006241!3.46e-23!52;UBERON:0007135!3.46e-23!52;UBERON:0000033!2.01e-21!63;UBERON:0000955!2.09e-21!50;UBERON:0006238!2.09e-21!50;UBERON:0002020!3.20e-21!34;UBERON:0002616!4.26e-21!49;UBERON:0003056!1.83e-18!49;UBERON:0002791!3.55e-18!29;UBERON:0003528!3.55e-18!29;UBERON:0001893!3.55e-18!29;UBERON:0003080!2.46e-17!40;UBERON:0002780!8.94e-17!39;UBERON:0001890!8.94e-17!39;UBERON:0006240!8.94e-17!39;UBERON:0000956!1.68e-13!21;UBERON:0001869!1.68e-13!21;UBERON:0000203!1.68e-13!21;UBERON:0002619!3.14e-11!17;UBERON:0007811!1.23e-10!86;UBERON:0000153!1.64e-09!94;UBERON:0002021!2.17e-07!10;UBERON:0000411!2.17e-07!10;UBERON:0001950!2.17e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.49e-35,73;UBERON:0001016,8.59e-35,75;UBERON:0002346,3.18e-30,64;UBERON:0003075,3.18e-30,64;UBERON:0007284,3.18e-30,64;UBERON:0004121,2.77e-29,95;UBERON:0000924,2.77e-29,95;UBERON:0006601,2.77e-29,95;UBERON:0000073,2.05e-28,54;UBERON:0001049,3.81e-27,52;UBERON:0005068,3.81e-27,52;UBERON:0006241,3.81e-27,52;UBERON:0007135,3.81e-27,52;UBERON:0010371,1.32e-24,73;UBERON:0002020,1.62e-24,34;UBERON:0000955,3.45e-23,47;UBERON:0006238,3.45e-23,47;UBERON:0002616,7.79e-23,46;UBERON:0003056,2.54e-21,49;UBERON:0003528,5.84e-21,29;UBERON:0002791,5.84e-21,29;UBERON:0001893,5.84e-21,29;UBERON:0003080,5.28e-20,40;UBERON:0002780,2.39e-19,39;UBERON:0001890,2.39e-19,39;UBERON:0006240,2.39e-19,39;UBERON:0010314,3.72e-18,92;UBERON:0000956,1.70e-15,21;UBERON:0001869,1.70e-15,21;UBERON:0000203,1.70e-15,21;UBERON:0002619,7.57e-13,17;UBERON:0002021,2.27e-08,10;UBERON:0000411,2.27e-08,10;UBERON:0001950,2.27e-08,10;UBERON:0003076,1.27e-07,12;UBERON:0003057,1.27e-07,12 | |||
|phase1_expression=1.92178616525753,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.3577272795174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.494364699762,8.12838876117546,11.665793944457,10.4989816219022,38.8131923785423,0,0,0,0,0,0,19.8270131642406,24.3335850465135,36.7622214033584,3.38844532069132,4.4464739805557,0,0,0.7104801149461,0.299600110518405,1.92109152660777,17.8346133170582,22.0059679480656,21.0324961351382,12.8542942981712,15.0190607847097,23.1507610516263,22.0444583341944,30.3342199581307,13.2139057199266,16.4716666129892,15.2070467923681,25.0583946687368,29.7334841707831,30.7338888628488,18.7052609330925,15.757353080887,16.6550090076723,26.5165726926301,25.3421591822403,28.1463163196204,0.681535739998656,2.87171928405785,0.289864488701678,0,0,0.539703191637817,0,0,1.54488862144927,4.94247935476367,5.19572009205738,4.94675404314476,2.11265129665021,0,0,0,0,0,0.505524445014783,0.5709193985953,2.07150306917737,1.03909497345377,2.77576522825817,5.48037860961854,4.15107895060905,4.06951129492081,3.88042733547826,0.376999773989026,0,0.144599356919912,0,0.161766849947409,0.441683036920787,0.484875253135222,0,39.2326267995473,24.0863712835473,0.766371165625774,0,0,0,18.574039286198,10.980014467647,22.6177833803156,20.3374454624963,13.0414883238469,19.7398642331582,17.1975738851823,2.03678727700633,0.497627882440372,0.505445516867349,1.05220927943237,2.21204753036596,4.82794419310293,5.04173963454978,4.52114453507145,3.74200745332303,5.12454881139399,3.65436725782942,2.84573707812917,0.431135985865684,0.189106080167819,0.351902248327898,0.43839146485515,0,0.696504333044333,0.205782136407943,0.995171334092466,0,0,0,0,0.469052119962192,0.180062061461015,0.23674473558521,0.196764231747404,0.154267112887378,0.232533944750408,0.268273401399619,0.233530684734339,0,0.164167464079095,0.162137619091711,0.292399974850665,0.658650345873152,0.536825675041487,18.2952255250791,31.0771929385439,0,0,1.2797295032114,1.85789337488351,2.83508414908605,2.01683524623343,1.55664630691409,2.28270751335071,0.474529061544512,2.14108641141214,1.75934646160189,1.1937388322469,0.779856348476481,0,0,0,0.569003702859245,1.37098215131675,0,0,0.193952487167626,0.49095073923223,0,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0.372140947668503,0,0,0,0,3.32555742299888,0.757965647081939,0.814824882210129,0.339490171550376,0.469380496577004,0.837531287209079,0.476087281772027,2.34160377429359,2.99506773801763,3.5434350343804,2.71073106717728,1.63863314715738,2.41758974612254,3.03763023021174,0,0,0,0,23.119284958242,19.2227166011213,0,0,7.2566890465739,7.41833614163613,7.53981892064796,1.67278158566786,2.67358408898873,2.54768877709949,6.47697122679831,7.01414058987149,4.34816555741176,5.46246237917072,0.141940085208269,3.73937767701236,1.79175655288934,0,1.32745138339963,0.971122544619926,0.302323556964751,0.565815239267694,0.590603785761546,0.614870295887855,1.55056975900933,0.727067458955011,0.712994756769443,0.316036757935816,0,0,0,4.14140516272013,1.68166288917581,1.28602221018955,0.177340233642274,1.24858172321449,2.79733335023606,1.2178597964584,0.469343416127421,0,0.882113592219848,0.49465875882444,0.968786560175433,0.904693873922338,0.835606408021955,0.164140899745061,0,15.9465759729038,0.341741761595705,0.412773735926445,0.370389054739423,0,0.136694227721025,0,0,0,0,0,1.58167996790568,1.21991680276109,2.80813886136683,1.04544148007234,1.31017538247707,0.809186078308924,1.32245529160537,0.523511883968059,0.388844919875379,0,0,0.149516546043979,0.165458490457098,0.194451188344048,0.129159823477731,0,0.117357238645754,0.13020438484395,0,0,0,0,6.48720688928525,5.23825881540619,2.33857481360031,1.07416017400489,0,0.120195449519969,0.147689527174577,0.100966449948148,0.15241361331,0,0,0,0,0.453460767230423,0,0.269141569828427,1.17519231454855,0.965947970160952,0.187682475451182,0,0.214368379079066,0.501572104035363,38.9678771405776,35.9053684475598,37.2382083735608,40.5573510331103,19.8673930733486,20.3956352295219,15.5255175053315,13.5096360967266,25.8291173120997,16.0505696643064,4.98179268404048,2.79317411380722,5.29274177837816,6.07766792670735,8.17491334249131,4.77993121970037,6.66740183404846,7.82933217507798,5.45562656306086,6.06473308233114,8.87177549615839,8.48818536237343,7.58496210506047,6.78666615491614,5.85841783347255,4.28664322154766,3.70829843023538,5.78727661391115,5.35711671044299,8.24313952752625,6.17164654293748,5.14679837862079,6.91464950847231,6.68593516508711,6.39943786824248,6.59993941555077,6.76833499629258,5.5244639401947,5.97538100921792,2.80571135828869,4.98267076121531,4.23569274214923,6.95692773388472,5.42278944150881,3.2794123866794,7.74412791607632,3.74290573512653,3.65280791882107,3.06061331310149,1.10295709559758,1.39120701372253 | |||
|short_description=p2@Stmn2 | |||
}} |
Revision as of 02:40, 14 September 2013
Short description: | p2@Stmn2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Stmn2_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 25bp_to_ENSMUST00000029002, ENSMUST00000116348, NM_025285, uc008oon.1, uc008ooo.1_5end |
EntrezGene: | Stmn2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 7.87e-19 | 44 |
neurectodermal cell | 7.87e-19 | 44 |
neural cell | 7.99e-19 | 43 |
neuron | 1.61e-18 | 33 |
neuronal stem cell | 1.61e-18 | 33 |
neuroblast | 1.61e-18 | 33 |
electrically signaling cell | 1.61e-18 | 33 |
CNS neuron (sensu Vertebrata) | 1.06e-16 | 23 |
neuroblast (sensu Vertebrata) | 1.06e-16 | 23 |
electrically responsive cell | 2.42e-13 | 39 |
electrically active cell | 2.42e-13 | 39 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.