FFCP PHASE1:Mm9::chr8:126958342..126958405,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=209966|HGNC=|MCL_coexpression_id=1|UniProt=D3YZI9|association_with_transcript=-104bp_to_ENSMUST00000140012_5end|description=CAGE_peak_1_at_Pgbd5_5end|id=chr8:126958342..126958405,-|ontology_enrichment_celltype=CL:0000540!5.92e-13!33;CL:0000047!5.92e-13!33;CL:0000031!5.92e-13!33;CL:0000404!5.92e-13!33;CL:0000117!2.32e-11!23;CL:0000337!2.32e-11!23;CL:0000393!2.62e-10!39;CL:0000211!2.62e-10!39;CL:0002319!1.88e-08!43;CL:0000221!2.82e-08!44;CL:0000133!2.82e-08!44|ontology_enrichment_celltype_v019_2=CL:0000540,3.95e-15,33;CL:0000047,3.95e-15,33;CL:0000031,3.95e-15,33;CL:0000404,3.95e-15,33;CL:0000117,3.13e-13,23;CL:0000337,3.13e-13,23;CL:0000393,2.09e-12,39;CL:0000211,2.09e-12,39;CL:0002319,2.93e-09,43;CL:0000221,8.98e-09,44;CL:0000133,8.98e-09,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!2.81e-25!71;UBERON:0003075!2.81e-25!71;UBERON:0007284!2.81e-25!71;UBERON:0001017!6.29e-25!73;UBERON:0005743!6.29e-25!73;UBERON:0000073!2.25e-24!75;UBERON:0001016!2.25e-24!75;UBERON:0004121!2.72e-23!102;UBERON:0000924!2.72e-23!102;UBERON:0006601!2.72e-23!102;UBERON:0001049!8.90e-21!52;UBERON:0005068!8.90e-21!52;UBERON:0006241!8.90e-21!52;UBERON:0007135!8.90e-21!52;UBERON:0000033!1.28e-20!63;UBERON:0000955!5.00e-20!50;UBERON:0006238!5.00e-20!50;UBERON:0002616!2.46e-19!49;UBERON:0003056!1.98e-18!49;UBERON:0003080!4.89e-16!40;UBERON:0002020!1.07e-15!34;UBERON:0002780!1.87e-15!39;UBERON:0001890!1.87e-15!39;UBERON:0006240!1.87e-15!39;UBERON:0002791!1.87e-13!29;UBERON:0003528!1.87e-13!29;UBERON:0001893!1.87e-13!29;UBERON:0000956!3.33e-09!21;UBERON:0001869!3.33e-09!21;UBERON:0000203!3.33e-09!21;UBERON:0000468!1.01e-08!333;UBERON:0007811!1.14e-08!86;UBERON:0000153!5.30e-08!94;UBERON:0002021!8.73e-08!10;UBERON:0000411!8.73e-08!10;UBERON:0001950!8.73e-08!10;UBERON:0002619!1.29e-07!17;UBERON:0000922!3.94e-07!328|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.77e-29,73;UBERON:0002346,1.54e-27,64;UBERON:0003075,1.54e-27,64;UBERON:0007284,1.54e-27,64;UBERON:0001016,2.80e-27,75;UBERON:0000073,6.97e-26,54;UBERON:0001049,1.08e-24,52;UBERON:0005068,1.08e-24,52;UBERON:0006241,1.08e-24,52;UBERON:0007135,1.08e-24,52;UBERON:0004121,1.23e-23,95;UBERON:0000924,1.23e-23,95;UBERON:0006601,1.23e-23,95;UBERON:0010314,1.02e-22,92;UBERON:0010371,1.51e-22,73;UBERON:0000955,6.69e-22,47;UBERON:0006238,6.69e-22,47;UBERON:0002616,4.33e-21,46;UBERON:0003056,6.15e-21,49;UBERON:0002020,4.10e-19,34;UBERON:0003080,1.06e-18,40;UBERON:0002780,5.24e-18,39;UBERON:0001890,5.24e-18,39;UBERON:0006240,5.24e-18,39;UBERON:0003528,1.97e-16,29;UBERON:0002791,1.97e-16,29;UBERON:0001893,1.97e-16,29;UBERON:0000956,2.49e-11,21;UBERON:0001869,2.49e-11,21;UBERON:0000203,2.49e-11,21;UBERON:0002619,1.96e-09,17;UBERON:0002021,5.62e-09,10;UBERON:0000411,5.62e-09,10;UBERON:0001950,5.62e-09,10;UBERON:0000025,1.77e-07,114;UBERON:0004111,8.84e-07,122|phase1_expression=2.24208385946712,0,0,0,0,0.503637815735669,0.233612640595526,0,0,0.234064526321993,0,0,0,0,0,0,0,0,0,0,4.76242424845991,0,0.261199789138935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56478268869608,0,0,0,0.139986421625363,0,0,0,0,2.05807548828758,0.573066879877513,1.54701627683233,5.26022798234954,7.93486468908049,5.07065122804943,0,0,0.449949858640699,0,0.7104801149461,0.599200221036809,0.768436610643109,3.31806759387129,2.70011876663381,3.36519938162211,6.28432165688368,2.42955395046775,3.91970557487853,3.1629005436018,4.5960939330501,3.30347642998166,11.3641730895817,7.21950706304344,7.91317726381163,6.67859798297591,6.25096044668112,9.21303896704557,3.37657566019008,8.09830713217094,5.30331453852602,4.55589378557129,7.45597783301202,0.681535739998656,0.529000920747499,0,0,0,0,0,0,0.702222100658759,0,0,0,0.563373679106722,0,0,0,0,0.253359865475099,0,0.79928715803342,0,2.07818994690755,2.77576522825817,1.52232739156071,1.61430848079241,2.71300752994721,1.64624189989987,1.75933227861546,0.247194967734374,0.289198713839823,0,0.970601099684455,0.220841518460394,0.969750506270444,0,28.6925181071316,27.0186251789357,0.255457055208591,0,0,0,7.9389038884556,21.0450277296568,7.03664371832041,18.251553620189,25.0601148183724,13.2984348518118,17.5220564113178,0.203678727700633,0.248813941220186,0.252722758433675,0.841767423545896,1.17108398666433,3.67843367093557,2.70093194708024,3.46621081022145,3.74200745332303,2.3060469651273,4.40398105430725,3.3631438196072,0.431135985865684,0.756424320671277,0.703804496655795,1.31517439456545,1.39023624612799,0.696504333044333,0.205782136407943,3.38358253591438,0,0,0,1.24275463521301,1.17263029990548,0.36012412292203,1.42046841351126,1.77087808572663,0.925602677324269,1.62773761325285,0.536546802799238,0.934122738937356,1.15191894939436,0.164167464079095,0.405344047729279,0.438599962275997,0,0.134206418760372,28.3891430561572,7.82075054082562,0,0.528901133327089,0.853153002140936,1.16118335930219,1.03093969057675,1.21010114774006,0.444756087689741,1.52180500890047,0.474529061544512,0.988193728344065,1.25667604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| ||
|EntrezGene=209966 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=D3YZI9 | |||
|association_with_transcript=-104bp_to_ENSMUST00000140012_5end | |||
|description=CAGE_peak_1_at_Pgbd5_5end | |||
|id=chr8:126958342..126958405,- | |||
|ontology_enrichment_celltype=CL:0000540!5.92e-13!33;CL:0000047!5.92e-13!33;CL:0000031!5.92e-13!33;CL:0000404!5.92e-13!33;CL:0000117!2.32e-11!23;CL:0000337!2.32e-11!23;CL:0000393!2.62e-10!39;CL:0000211!2.62e-10!39;CL:0002319!1.88e-08!43;CL:0000221!2.82e-08!44;CL:0000133!2.82e-08!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,3.95e-15,33;CL:0000047,3.95e-15,33;CL:0000031,3.95e-15,33;CL:0000404,3.95e-15,33;CL:0000117,3.13e-13,23;CL:0000337,3.13e-13,23;CL:0000393,2.09e-12,39;CL:0000211,2.09e-12,39;CL:0002319,2.93e-09,43;CL:0000221,8.98e-09,44;CL:0000133,8.98e-09,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!2.81e-25!71;UBERON:0003075!2.81e-25!71;UBERON:0007284!2.81e-25!71;UBERON:0001017!6.29e-25!73;UBERON:0005743!6.29e-25!73;UBERON:0000073!2.25e-24!75;UBERON:0001016!2.25e-24!75;UBERON:0004121!2.72e-23!102;UBERON:0000924!2.72e-23!102;UBERON:0006601!2.72e-23!102;UBERON:0001049!8.90e-21!52;UBERON:0005068!8.90e-21!52;UBERON:0006241!8.90e-21!52;UBERON:0007135!8.90e-21!52;UBERON:0000033!1.28e-20!63;UBERON:0000955!5.00e-20!50;UBERON:0006238!5.00e-20!50;UBERON:0002616!2.46e-19!49;UBERON:0003056!1.98e-18!49;UBERON:0003080!4.89e-16!40;UBERON:0002020!1.07e-15!34;UBERON:0002780!1.87e-15!39;UBERON:0001890!1.87e-15!39;UBERON:0006240!1.87e-15!39;UBERON:0002791!1.87e-13!29;UBERON:0003528!1.87e-13!29;UBERON:0001893!1.87e-13!29;UBERON:0000956!3.33e-09!21;UBERON:0001869!3.33e-09!21;UBERON:0000203!3.33e-09!21;UBERON:0000468!1.01e-08!333;UBERON:0007811!1.14e-08!86;UBERON:0000153!5.30e-08!94;UBERON:0002021!8.73e-08!10;UBERON:0000411!8.73e-08!10;UBERON:0001950!8.73e-08!10;UBERON:0002619!1.29e-07!17;UBERON:0000922!3.94e-07!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.77e-29,73;UBERON:0002346,1.54e-27,64;UBERON:0003075,1.54e-27,64;UBERON:0007284,1.54e-27,64;UBERON:0001016,2.80e-27,75;UBERON:0000073,6.97e-26,54;UBERON:0001049,1.08e-24,52;UBERON:0005068,1.08e-24,52;UBERON:0006241,1.08e-24,52;UBERON:0007135,1.08e-24,52;UBERON:0004121,1.23e-23,95;UBERON:0000924,1.23e-23,95;UBERON:0006601,1.23e-23,95;UBERON:0010314,1.02e-22,92;UBERON:0010371,1.51e-22,73;UBERON:0000955,6.69e-22,47;UBERON:0006238,6.69e-22,47;UBERON:0002616,4.33e-21,46;UBERON:0003056,6.15e-21,49;UBERON:0002020,4.10e-19,34;UBERON:0003080,1.06e-18,40;UBERON:0002780,5.24e-18,39;UBERON:0001890,5.24e-18,39;UBERON:0006240,5.24e-18,39;UBERON:0003528,1.97e-16,29;UBERON:0002791,1.97e-16,29;UBERON:0001893,1.97e-16,29;UBERON:0000956,2.49e-11,21;UBERON:0001869,2.49e-11,21;UBERON:0000203,2.49e-11,21;UBERON:0002619,1.96e-09,17;UBERON:0002021,5.62e-09,10;UBERON:0000411,5.62e-09,10;UBERON:0001950,5.62e-09,10;UBERON:0000025,1.77e-07,114;UBERON:0004111,8.84e-07,122 | |||
|phase1_expression=2.24208385946712,0,0,0,0,0.503637815735669,0.233612640595526,0,0,0.234064526321993,0,0,0,0,0,0,0,0,0,0,4.76242424845991,0,0.261199789138935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56478268869608,0,0,0,0.139986421625363,0,0,0,0,2.05807548828758,0.573066879877513,1.54701627683233,5.26022798234954,7.93486468908049,5.07065122804943,0,0,0.449949858640699,0,0.7104801149461,0.599200221036809,0.768436610643109,3.31806759387129,2.70011876663381,3.36519938162211,6.28432165688368,2.42955395046775,3.91970557487853,3.1629005436018,4.5960939330501,3.30347642998166,11.3641730895817,7.21950706304344,7.91317726381163,6.67859798297591,6.25096044668112,9.21303896704557,3.37657566019008,8.09830713217094,5.30331453852602,4.55589378557129,7.45597783301202,0.681535739998656,0.529000920747499,0,0,0,0,0,0,0.702222100658759,0,0,0,0.563373679106722,0,0,0,0,0.253359865475099,0,0.79928715803342,0,2.07818994690755,2.77576522825817,1.52232739156071,1.61430848079241,2.71300752994721,1.64624189989987,1.75933227861546,0.247194967734374,0.289198713839823,0,0.970601099684455,0.220841518460394,0.969750506270444,0,28.6925181071316,27.0186251789357,0.255457055208591,0,0,0,7.9389038884556,21.0450277296568,7.03664371832041,18.251553620189,25.0601148183724,13.2984348518118,17.5220564113178,0.203678727700633,0.248813941220186,0.252722758433675,0.841767423545896,1.17108398666433,3.67843367093557,2.70093194708024,3.46621081022145,3.74200745332303,2.3060469651273,4.40398105430725,3.3631438196072,0.431135985865684,0.756424320671277,0.703804496655795,1.31517439456545,1.39023624612799,0.696504333044333,0.205782136407943,3.38358253591438,0,0,0,1.24275463521301,1.17263029990548,0.36012412292203,1.42046841351126,1.77087808572663,0.925602677324269,1.62773761325285,0.536546802799238,0.934122738937356,1.15191894939436,0.164167464079095,0.405344047729279,0.438599962275997,0,0.134206418760372,28.3891430561572,7.82075054082562,0,0.528901133327089,0.853153002140936,1.16118335930219,1.03093969057675,1.21010114774006,0.444756087689741,1.52180500890047,0.474529061544512,0.988193728344065,1.25667604400135,1.39269530428806,1.55971269695296,0.898819408654221,0.216138049874694,0.597423819763102,0.379335801906163,0.685491075658373,0,1.01825663922657,0.193952487167626,0.280543279561274,0.252946148497029,0,0,0,0,0.166845105716094,0.393117990226406,0,0.405720242777006,0,0,0.287696137450811,0.162135226775035,0,0,0.372140947668503,0,0,0,0,0,0.757965647081939,0.814824882210129,1.18821560042632,1.64283173801951,1.34005005953453,2.85652369063216,3.51240566144038,4.09851374676097,3.32197034473162,3.18909537314974,0.163863314715738,0.172684981865896,0.578596234326046,0,0,0,0,12.2018448390722,9.02529986759964,0.327869890753351,0,1.26203287766503,1.56175497718655,1.93881057959519,2.62865677747807,3.34198011123591,2.26461224631066,2.02405350837447,2.92255857911312,1.18586333383957,14.1381379225595,4.40014264145633,1.24645922567079,0.651547837414304,2.3095817216155,0,1.94224508923985,1.81394134178851,0.377210159511796,0.590603785761546,0.614870295887855,1.03371317267288,0.727067458955011,0.356497378384721,0,0,0,7.48967132658334,0.36012218806262,0.646793418913773,2.14337035031592,1.59606210278046,1.78368817602071,2.13913726782757,4.26250928760439,0,0.21183207086382,0.441056796109924,0,1.13025098687134,0.422190474497091,0.477489376012546,0.164140899745061,1.1659233465194,8.71498919449395,0,0.619160603889667,0.555583582109135,0,0,0,0,0.139951452323658,0,0.954670618015114,2.68885594543965,1.82987520414164,0.86404272657441,0.209088296014469,0.655087691238533,1.07891477107857,1.23980183588004,0.523511883968059,0.648074866458964,0,4.50954350947352,6.13017838780313,6.45288112782681,6.80579159204167,7.74958940866387,6.58928889414035,6.21993364822496,3.25510962109875,2.20204623293993,1.20792060413003,6.04863013141517,0.316011120628178,1.01362607645082,0.308132871494482,0.51968329191118,0,0.39736270956253,0,0,0.100966449948148,0,0,0.0974578807397524,0,0,0,0,0.448569283047378,0.335769232728157,1.73870634628971,0.375364950902364,2.01466786693992,0.428736758158132,1.00314420807073,16.942555278512,12.889106622201,13.1765968091061,15.1230800462445,13.7016503954128,12.8416962556249,14.1754725048679,10.8077088773813,10.8754178156209,13.4617681055473,1.45302286617847,0.798049746802062,2.04880326904961,1.94485373654635,2.51535795153579,1.83843508450014,1.55572709461131,0.824140228955577,1.28367683836726,1.76888048234658,1.2673964994512,1.32038438970253,0.842773567228942,2.17685518176556,2.01024141344646,2.85776214769844,1.97003354106254,3.47236596834669,1.64834360321323,2.06078488188156,1.71434626192708,1.24233064311536,2.14592570952589,0.872078499793971,1.2234219453993,1.26921911837515,2.0122077016005,1.8414879800649,1.08643291076689,0.561142271657738,2.01679530811096,1.87158516513571,1.22769312950907,1.39443157067369,0.771626443924566,4.74640098082097,1.40358965067245,0.429742108096597,1.14772999241306,0.441182838239031,0.695603506861264 | |||
|short_description=p1@Pgbd5 | |||
}} |
Revision as of 15:07, 14 September 2013
Short description: | p1@Pgbd5 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Pgbd5_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -104bp_to_ENSMUST00000140012_5end |
EntrezGene: | Pgbd5 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 3.95e-15 | 33 |
neuronal stem cell | 3.95e-15 | 33 |
neuroblast | 3.95e-15 | 33 |
electrically signaling cell | 3.95e-15 | 33 |
CNS neuron (sensu Vertebrata) | 3.13e-13 | 23 |
neuroblast (sensu Vertebrata) | 3.13e-13 | 23 |
electrically responsive cell | 2.09e-12 | 39 |
electrically active cell | 2.09e-12 | 39 |
neural cell | 2.93e-09 | 43 |
ectodermal cell | 8.98e-09 | 44 |
neurectodermal cell | 8.98e-09 | 44 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.