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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008471
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001135,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0002385,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0004237,UBERON:0004695,UBERON:0002049,UBERON:0010317,UBERON:0002111,UBERON:0007798,UBERON:0001015,UBERON:0004178,UBERON:0002204,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0000383,UBERON:0004572,UBERON:0004537,UBERON:0001009
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001135,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0002385,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0004237,UBERON:0004695,UBERON:0002049,UBERON:0010317,UBERON:0002111,UBERON:0007798,UBERON:0001015,UBERON:0004178,UBERON:0002204,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0000383,UBERON:0004572,UBERON:0004537,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002539
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002539
Line 41: Line 42:
|is_a=EFO:0002091;;FF:0000546
|is_a=EFO:0002091;;FF:0000546
|is_obsolete=
|is_obsolete=
|library_ids=CNhs13339
|name=Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep1 (LK1)
|name=Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep1 (LK1)
|namespace=FANTOM5
|namespace=FANTOM5
Line 85: Line 87:
|top_motifs=ALX4:2.48836582536;NKX2-2,8:1.97348354946;PAX1,9:1.95743068532;UFEwm:1.80396823994;GCM1,2:1.75369336958;NKX3-1:1.65441400866;NKX3-2:1.43033883962;NFE2L1:1.34752566138;TP53:1.29905159063;EVI1:1.16015059888;HMGA1,2:1.12974797944;FOXL1:1.11610876972;HOX{A5,B5}:1.10711157714;XBP1:1.10545183647;TBP:1.09513094428;SRF:1.06548326891;FOXD3:1.04752991131;GLI1..3:1.04260269544;FOX{I1,J2}:1.02938437224;TAL1_TCF{3,4,12}:1.00529448591;CDC5L:0.972110148503;KLF4:0.945926432859;RXR{A,B,G}:0.930788104067;EBF1:0.923458286981;GZF1:0.837162350646;ZNF238:0.823541311021;ZBTB6:0.811204898561;HSF1,2:0.770436719077;TLX2:0.768326217675;TBX4,5:0.767361480307;EN1,2:0.750814623747;SPZ1:0.72818685701;DBP:0.683158799512;HMX1:0.645037429604;PAX4:0.605134091616;TLX1..3_NFIC{dimer}:0.591416321243;ONECUT1,2:0.590350480878;HOX{A4,D4}:0.561055208873;POU3F1..4:0.55507401973;TFAP4:0.525641662696;POU6F1:0.52081540836;NR3C1:0.519506593076;IKZF1:0.51375522958;GATA4:0.509134494696;SMAD1..7,9:0.443660734064;GFI1B:0.440508209201;MYBL2:0.436437592307;TEAD1:0.425832265891;PRDM1:0.423776625631;HLF:0.401437516271;NFATC1..3:0.393405313944;FOXM1:0.38821519924;NANOG{mouse}:0.321710858399;ZBTB16:0.304066430431;HOXA9_MEIS1:0.301522122216;PAX6:0.280001925564;HES1:0.266883345829;TEF:0.261255439221;ZNF384:0.244786891535;ZIC1..3:0.236990643016;BACH2:0.222350583033;YY1:0.1942845786;ESR1:0.184422917566;PPARG:0.166216537903;CDX1,2,4:0.163889361472;ATF6:0.160262695166;bHLH_family:0.152841007201;ALX1:0.12834963353;TFCP2:0.118911631367;POU1F1:0.115645954411;SOX17:0.114138372753;IRF1,2:0.10503125889;GTF2I:0.10314762808;NFKB1_REL_RELA:0.0990716116869;ARID5B:0.0952776310166;LHX3,4:0.0940217994475;MAFB:0.0834010638474;NFIX:0.0760517578859;NFE2L2:0.0709864735671;GTF2A1,2:0.0701321172406;FOXP3:0.0650450909011;STAT2,4,6:0.0610143361077;MTF1:0.0543503000374;AR:0.0506405621568;FOS_FOS{B,L1}_JUN{B,D}:0.0485009847871;NR1H4:0.0366838990641;FOSL2:-0.00882302654784;IKZF2:-0.0139828205309;RXRA_VDR{dimer}:-0.0297507821095;JUN:-0.038885888202;NKX2-1,4:-0.046947060758;MZF1:-0.0553424512936;BPTF:-0.05634720505;AIRE:-0.0605025629034;SOX2:-0.0778341887252;NKX6-1,2:-0.0817570906049;ELF1,2,4:-0.0897614225983;ADNP_IRX_SIX_ZHX:-0.090591254356;MYFfamily:-0.108763292398;ETS1,2:-0.115830478193;SPI1:-0.118655439732;HIF1A:-0.126985056798;RUNX1..3:-0.128421623491;HNF1A:-0.129674902208;PAX5:-0.13756770503;PITX1..3:-0.166444117891;HNF4A_NR2F1,2:-0.183209850116;DMAP1_NCOR{1,2}_SMARC:-0.194118961168;NFE2:-0.212319630788;HAND1,2:-0.213079289734;ELK1,4_GABP{A,B1}:-0.22775270691;FOX{D1,D2}:-0.232091049843;PAX8:-0.23546513817;SPIB:-0.236459548697;MEF2{A,B,C,D}:-0.242183570002;REST:-0.25263052626;MAZ:-0.294215590532;IRF7:-0.308410478833;POU5F1:-0.31668119007;LEF1_TCF7_TCF7L1,2:-0.320559875078;PATZ1:-0.338194545902;ZNF423:-0.362087088102;NKX2-3_NKX2-5:-0.363561899792;CRX:-0.366721414447;SOX5:-0.369281195169;STAT1,3:-0.3784103558;PAX2:-0.387172110336;NFIL3:-0.392884229432;ESRRA:-0.39295222337;MED-1{core}:-0.394305380143;CEBPA,B_DDIT3:-0.414491360967;RREB1:-0.423792746112;AHR_ARNT_ARNT2:-0.43449750836;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.469609253683;MYB:-0.47897072571;ZEB1:-0.481451325765;NR6A1:-0.484287703806;T:-0.500591663176;HBP1_HMGB_SSRP1_UBTF:-0.503121079138;MTE{core}:-0.511870823895;SNAI1..3:-0.520330593867;TGIF1:-0.538458031246;FOXP1:-0.538508300998;ATF5_CREB3:-0.542981063401;SOX{8,9,10}:-0.545302021279;NRF1:-0.553067309598;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.562666964099;CUX2:-0.569037413423;POU2F1..3:-0.569832790108;ZNF148:-0.572076296385;OCT4_SOX2{dimer}:-0.581818507233;FOXQ1:-0.584692812191;RFX1:-0.598096413275;SREBF1,2:-0.602242123199;NHLH1,2:-0.605729348279;GFI1:-0.610061431517;ZNF143:-0.610702863428;FOXO1,3,4:-0.614798858258;XCPE1{core}:-0.632026888478;FOXN1:-0.635166016974;PRRX1,2:-0.646903268718;HIC1:-0.672207433021;TOPORS:-0.684822759589;RFX2..5_RFXANK_RFXAP:-0.691983340914;TFAP2B:-0.706937955374;E2F1..5:-0.710206668396;LMO2:-0.721909416982;CREB1:-0.722435041655;FOX{F1,F2,J1}:-0.729020420128;PBX1:-0.735006960658;TFAP2{A,C}:-0.748646766363;ATF2:-0.769378222514;HOX{A6,A7,B6,B7}:-0.771712782938;ZFP161:-0.777729400087;PAX3,7:-0.779000587866;SP1:-0.892543147414;STAT5{A,B}:-0.903536325159;VSX1,2:-1.00167881664;ATF4:-1.04460122619;GATA6:-1.05411769914;NR5A1,2:-1.06981853724;EGR1..3:-1.08516016692;RORA:-1.17043420738;MYOD1:-1.21462999274;TFDP1:-1.23849321217;NFY{A,B,C}:-1.31057254854;FOXA2:-1.37107569463;PDX1:-1.39334595259;RBPJ:-1.42575156607;NANOG:-1.44233959546;EP300:-1.45193564633;BREu{core}:-1.61182636715
|top_motifs=ALX4:2.48836582536;NKX2-2,8:1.97348354946;PAX1,9:1.95743068532;UFEwm:1.80396823994;GCM1,2:1.75369336958;NKX3-1:1.65441400866;NKX3-2:1.43033883962;NFE2L1:1.34752566138;TP53:1.29905159063;EVI1:1.16015059888;HMGA1,2:1.12974797944;FOXL1:1.11610876972;HOX{A5,B5}:1.10711157714;XBP1:1.10545183647;TBP:1.09513094428;SRF:1.06548326891;FOXD3:1.04752991131;GLI1..3:1.04260269544;FOX{I1,J2}:1.02938437224;TAL1_TCF{3,4,12}:1.00529448591;CDC5L:0.972110148503;KLF4:0.945926432859;RXR{A,B,G}:0.930788104067;EBF1:0.923458286981;GZF1:0.837162350646;ZNF238:0.823541311021;ZBTB6:0.811204898561;HSF1,2:0.770436719077;TLX2:0.768326217675;TBX4,5:0.767361480307;EN1,2:0.750814623747;SPZ1:0.72818685701;DBP:0.683158799512;HMX1:0.645037429604;PAX4:0.605134091616;TLX1..3_NFIC{dimer}:0.591416321243;ONECUT1,2:0.590350480878;HOX{A4,D4}:0.561055208873;POU3F1..4:0.55507401973;TFAP4:0.525641662696;POU6F1:0.52081540836;NR3C1:0.519506593076;IKZF1:0.51375522958;GATA4:0.509134494696;SMAD1..7,9:0.443660734064;GFI1B:0.440508209201;MYBL2:0.436437592307;TEAD1:0.425832265891;PRDM1:0.423776625631;HLF:0.401437516271;NFATC1..3:0.393405313944;FOXM1:0.38821519924;NANOG{mouse}:0.321710858399;ZBTB16:0.304066430431;HOXA9_MEIS1:0.301522122216;PAX6:0.280001925564;HES1:0.266883345829;TEF:0.261255439221;ZNF384:0.244786891535;ZIC1..3:0.236990643016;BACH2:0.222350583033;YY1:0.1942845786;ESR1:0.184422917566;PPARG:0.166216537903;CDX1,2,4:0.163889361472;ATF6:0.160262695166;bHLH_family:0.152841007201;ALX1:0.12834963353;TFCP2:0.118911631367;POU1F1:0.115645954411;SOX17:0.114138372753;IRF1,2:0.10503125889;GTF2I:0.10314762808;NFKB1_REL_RELA:0.0990716116869;ARID5B:0.0952776310166;LHX3,4:0.0940217994475;MAFB:0.0834010638474;NFIX:0.0760517578859;NFE2L2:0.0709864735671;GTF2A1,2:0.0701321172406;FOXP3:0.0650450909011;STAT2,4,6:0.0610143361077;MTF1:0.0543503000374;AR:0.0506405621568;FOS_FOS{B,L1}_JUN{B,D}:0.0485009847871;NR1H4:0.0366838990641;FOSL2:-0.00882302654784;IKZF2:-0.0139828205309;RXRA_VDR{dimer}:-0.0297507821095;JUN:-0.038885888202;NKX2-1,4:-0.046947060758;MZF1:-0.0553424512936;BPTF:-0.05634720505;AIRE:-0.0605025629034;SOX2:-0.0778341887252;NKX6-1,2:-0.0817570906049;ELF1,2,4:-0.0897614225983;ADNP_IRX_SIX_ZHX:-0.090591254356;MYFfamily:-0.108763292398;ETS1,2:-0.115830478193;SPI1:-0.118655439732;HIF1A:-0.126985056798;RUNX1..3:-0.128421623491;HNF1A:-0.129674902208;PAX5:-0.13756770503;PITX1..3:-0.166444117891;HNF4A_NR2F1,2:-0.183209850116;DMAP1_NCOR{1,2}_SMARC:-0.194118961168;NFE2:-0.212319630788;HAND1,2:-0.213079289734;ELK1,4_GABP{A,B1}:-0.22775270691;FOX{D1,D2}:-0.232091049843;PAX8:-0.23546513817;SPIB:-0.236459548697;MEF2{A,B,C,D}:-0.242183570002;REST:-0.25263052626;MAZ:-0.294215590532;IRF7:-0.308410478833;POU5F1:-0.31668119007;LEF1_TCF7_TCF7L1,2:-0.320559875078;PATZ1:-0.338194545902;ZNF423:-0.362087088102;NKX2-3_NKX2-5:-0.363561899792;CRX:-0.366721414447;SOX5:-0.369281195169;STAT1,3:-0.3784103558;PAX2:-0.387172110336;NFIL3:-0.392884229432;ESRRA:-0.39295222337;MED-1{core}:-0.394305380143;CEBPA,B_DDIT3:-0.414491360967;RREB1:-0.423792746112;AHR_ARNT_ARNT2:-0.43449750836;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.469609253683;MYB:-0.47897072571;ZEB1:-0.481451325765;NR6A1:-0.484287703806;T:-0.500591663176;HBP1_HMGB_SSRP1_UBTF:-0.503121079138;MTE{core}:-0.511870823895;SNAI1..3:-0.520330593867;TGIF1:-0.538458031246;FOXP1:-0.538508300998;ATF5_CREB3:-0.542981063401;SOX{8,9,10}:-0.545302021279;NRF1:-0.553067309598;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.562666964099;CUX2:-0.569037413423;POU2F1..3:-0.569832790108;ZNF148:-0.572076296385;OCT4_SOX2{dimer}:-0.581818507233;FOXQ1:-0.584692812191;RFX1:-0.598096413275;SREBF1,2:-0.602242123199;NHLH1,2:-0.605729348279;GFI1:-0.610061431517;ZNF143:-0.610702863428;FOXO1,3,4:-0.614798858258;XCPE1{core}:-0.632026888478;FOXN1:-0.635166016974;PRRX1,2:-0.646903268718;HIC1:-0.672207433021;TOPORS:-0.684822759589;RFX2..5_RFXANK_RFXAP:-0.691983340914;TFAP2B:-0.706937955374;E2F1..5:-0.710206668396;LMO2:-0.721909416982;CREB1:-0.722435041655;FOX{F1,F2,J1}:-0.729020420128;PBX1:-0.735006960658;TFAP2{A,C}:-0.748646766363;ATF2:-0.769378222514;HOX{A6,A7,B6,B7}:-0.771712782938;ZFP161:-0.777729400087;PAX3,7:-0.779000587866;SP1:-0.892543147414;STAT5{A,B}:-0.903536325159;VSX1,2:-1.00167881664;ATF4:-1.04460122619;GATA6:-1.05411769914;NR5A1,2:-1.06981853724;EGR1..3:-1.08516016692;RORA:-1.17043420738;MYOD1:-1.21462999274;TFDP1:-1.23849321217;NFY{A,B,C}:-1.31057254854;FOXA2:-1.37107569463;PDX1:-1.39334595259;RBPJ:-1.42575156607;NANOG:-1.44233959546;EP300:-1.45193564633;BREu{core}:-1.61182636715
|xref=
|xref=
}} {{DRAAccessionNumbers
|DRA_sample_Accession=CAGE@DRS008471
|accession_numbers=DRX008579;DRR009451;DRZ000876;DRZ002261;CAGE
|library_id=CNhs13339
}}
}}

Revision as of 18:50, 16 October 2013


Name:Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep1 (LK1)
Species:Human (Homo sapiens)
Library ID:{{{library_id}}}
Sample type:time courses
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissueaorta
dev stageNA
sexNA
ageNA
cell typesmooth muscle cell, vascular associated
cell lineNA
companyNA
collaborationLevon Khachigian (University of New South Wales)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
CAGE  DRS008471
Library accession numbers

Library idMethodExp. accession idRun accession id
{{{library_id}}} {{{accession_numbers}}}
Accession ID Hg19

Library idBAMCTSS
{{{library_id}}}
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.00938
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.229
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.721
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.162
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.272
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.729
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.332
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.29
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.262
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.958
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.112
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.804
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.311
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.223
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.37
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.223
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.882
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic1.045
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.427
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.164
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.64
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13339

Jaspar motifP-value
MA0002.20.374
MA0003.10.418
MA0004.10.396
MA0006.10.247
MA0007.10.451
MA0009.10.73
MA0014.10.998
MA0017.10.146
MA0018.27.48482e-6
MA0019.10.927
MA0024.15.57872e-5
MA0025.13.75921e-4
MA0027.10.877
MA0028.10.416
MA0029.10.715
MA0030.10.0781
MA0031.10.234
MA0035.20.0666
MA0038.19.85926e-4
MA0039.20.0896
MA0040.10.62
MA0041.10.36
MA0042.10.817
MA0043.12.87274e-6
MA0046.10.0967
MA0047.20.249
MA0048.10.308
MA0050.10.279
MA0051.10.871
MA0052.10.0756
MA0055.10.738
MA0057.10.625
MA0058.10.228
MA0059.10.295
MA0060.13.75844e-12
MA0061.10.0793
MA0062.20.0139
MA0065.20.0429
MA0066.10.0402
MA0067.10.0159
MA0068.10.628
MA0069.10.295
MA0070.10.202
MA0071.10.61
MA0072.10.576
MA0073.10.64
MA0074.10.113
MA0076.10.0963
MA0077.10.409
MA0078.10.48
MA0079.20.0846
MA0080.20.0132
MA0081.10.31
MA0083.10.00572
MA0084.10.143
MA0087.10.411
MA0088.10.351
MA0090.10.272
MA0091.10.0934
MA0092.10.124
MA0093.10.325
MA0099.20.162
MA0100.10.261
MA0101.10.571
MA0102.20.201
MA0103.10.673
MA0104.20.522
MA0105.11.01347e-4
MA0106.10.00295
MA0107.10.564
MA0108.20.549
MA0111.10.84
MA0112.20.00101
MA0113.10.541
MA0114.10.319
MA0115.10.607
MA0116.10.0152
MA0117.10.845
MA0119.10.0323
MA0122.10.413
MA0124.10.737
MA0125.10.503
MA0131.10.237
MA0135.10.155
MA0136.10.0107
MA0137.20.303
MA0138.20.285
MA0139.10.237
MA0140.10.32
MA0141.10.143
MA0142.10.359
MA0143.10.34
MA0144.10.39
MA0145.10.333
MA0146.10.874
MA0147.10.897
MA0148.10.718
MA0149.10.0938
MA0150.10.877
MA0152.10.092
MA0153.10.195
MA0154.10.0281
MA0155.10.238
MA0156.10.0505
MA0157.10.953
MA0159.10.0974
MA0160.10.935
MA0162.10.0424
MA0163.16.28794e-7
MA0164.10.793
MA0258.10.029
MA0259.10.258



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13339

Novel motifP-value
10.103
100.203
1000.447
1010.832
1020.93
1030.12
1040.978
1050.344
1060.0348
1070.086
1080.189
1090.183
110.0398
1100.0607
1110.0821
1120.0908
1130.245
1140.013
1150.082
1160.107
1170.185
1180.295
1190.0641
120.968
1200.0229
1210.419
1220.0594
1230.657
1240.95
1250.265
1260.368
1270.68
1280.0519
1290.533
130.287
1300.193
1310.972
1320.763
1330.734
1340.966
1350.0999
1360.853
1370.603
1380.859
1390.522
140.77
1400.16
1410.731
1420.757
1430.039
1440.329
1450.158
1460.587
1470.232
1480.00476
1490.0358
150.345
1500.212
1510.632
1520.133
1530.836
1540.928
1550.141
1560.549
1570.276
1580.0579
1590.186
160.0425
1600.105
1610.777
1620.173
1630.815
1640.0364
1650.317
1660.395
1670.208
1680.439
1690.0375
170.0771
180.0526
190.0845
20.533
200.887
210.269
220.425
230.209
240.637
250.526
260.0931
270.226
280.599
290.0788
30.0772
300.786
310.472
322.55176e-5
330.414
340.803
350.0856
360.129
370.0272
380.667
390.198
40.914
400.515
410.854
420.721
430.121
440.018
450.835
460.0296
470.241
480.248
490.41
50.441
500.672
510.577
520.532
530.558
540.564
550.353
560.721
570.304
580.901
590.0702
60.504
600.238
610.794
620.285
630.141
640.519
650.246
660.32
670.371
680.629
690.393
70.959
700.0177
710.0543
720.737
730.0399
740.049
750.196
760.594
770.0269
780.643
795.26115e-4
80.0192
800.617
810.254
820.0968
830.597
840.998
850.0416
860.438
870.12
880.178
890.0289
90.467
900.0408
910.244
920.161
930.682
940.174
950.268
960.535
970.506
980.858
990.08



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13339


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002539 (aortic smooth muscle cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001135 (smooth muscle tissue)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0002385 (muscle tissue)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0004237 (blood vessel smooth muscle)
0004695 (arterial system smooth muscle)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0002111 (artery smooth muscle tissue)
0007798 (vascular system)
0001015 (musculature)
0004178 (aorta smooth muscle tissue)
0002204 (musculoskeletal system)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0000383 (musculature of body)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000350 (experimentally modified sample)
0000344 (0 minute sample)
0000339 (FGF2 treatment sample)
0000546 (human Aortic Smooth Muscle cells 0min after treatment with FGF2 sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

{{{1}}} Accession numbers
MethodSample accession id
{{{2}}} 
Library accession numbers

Library idMethodExp. accession idRun accession id
{{{4}}} {{{3}}}
Accession ID

Library idBAMCTSS
{{{4}}}
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