FFCP PHASE1:Hg19::chr17:46724136..46724151,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=233bp_to_ENST00000433510_5end | |association_with_transcript=233bp_to_ENST00000433510_5end | ||
|cluster_id=chr17:46724136..46724151,- | |||
|coexpression_cluster_id=C3648 | |coexpression_cluster_id=C3648 | ||
|description=CAGE_peak_5_at_ENST00000433510_5end | |description=CAGE_peak_5_at_ENST00000433510_5end | ||
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|ontology_enrichment_celltype=CL:0000066!2.03e-17!254;CL:1000497!2.80e-10!18;CL:0002518!2.80e-10!18;CL:1000449!4.78e-10!16;CL:1000507!1.50e-09!12;CL:1000494!1.50e-09!12;CL:0002681!1.95e-08!13;CL:0002584!1.95e-08!13 | |ontology_enrichment_celltype=CL:0000066!2.03e-17!254;CL:1000497!2.80e-10!18;CL:0002518!2.80e-10!18;CL:1000449!4.78e-10!16;CL:1000507!1.50e-09!12;CL:1000494!1.50e-09!12;CL:0002681!1.95e-08!13;CL:0002584!1.95e-08!13 | ||
|ontology_enrichment_celltype_v019=CL:1000507;1.89e-16;10!CL:1000494;1.89e-16;10!CL:1000449;5.93e-14;15!CL:1000497;3.83e-12;17!CL:0002518;3.83e-12;17!CL:0002178;8.90e-11;3!CL:0002681;3.36e-10;12!CL:0002584;3.36e-10;12!CL:0000244;1.45e-08;4!CL:0000731;1.45e-08;4 | |ontology_enrichment_celltype_v019=CL:1000507;1.89e-16;10!CL:1000494;1.89e-16;10!CL:1000449;5.93e-14;15!CL:1000497;3.83e-12;17!CL:0002518;3.83e-12;17!CL:0002178;8.90e-11;3!CL:0002681;3.36e-10;12!CL:0002584;3.36e-10;12!CL:0000244;1.45e-08;4!CL:0000731;1.45e-08;4 | ||
|ontology_enrichment_celltype_v019_2=CL:1000507,2.21e-16,10;CL:1000494,2.21e-16,10;CL:0000066,5.21e-14,253;CL:1000449,6.66e-14,15;CL:1000497,4.24e-12,17;CL:0002518,4.24e-12,17;CL:0002178,7.07e-11,3;CL:0002681,4.59e-10,12;CL:0002584,4.59e-10,12;CL:0000244,1.23e-08,4;CL:0000731,1.23e-08,4 | |||
|ontology_enrichment_development_v019=UBERON:0008947;9.43e-08;29 | |ontology_enrichment_development_v019=UBERON:0008947;9.43e-08;29 | ||
|ontology_enrichment_disease=DOID:305!5.84e-27!106;DOID:0050687!1.17e-25!143;DOID:162!1.59e-18!235;DOID:14566!2.75e-18!239;DOID:1749!3.23e-09!14 | |ontology_enrichment_disease=DOID:305!5.84e-27!106;DOID:0050687!1.17e-25!143;DOID:162!1.59e-18!235;DOID:14566!2.75e-18!239;DOID:1749!3.23e-09!14 | ||
|ontology_enrichment_disease_v019=DOID:1749;1.47e-08;14!DOID:3119;5.60e-08;14!DOID:4929;1.69e-07;2!DOID:299;2.69e-07;25 | |ontology_enrichment_disease_v019=DOID:1749;1.47e-08;14!DOID:3119;5.60e-08;14!DOID:4929;1.69e-07;2!DOID:299;2.69e-07;25 | ||
|ontology_enrichment_disease_v019_2=DOID:0050687,1.86e-17,143;DOID:305,1.71e-16,106;DOID:162,3.00e-14,235;DOID:14566,9.40e-14,239;DOID:1749,1.47e-08,14;DOID:3119,6.39e-08,14;DOID:4929,1.30e-07,2;DOID:299,2.05e-07,25 | |||
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|ontology_enrichment_uberon_v019=UBERON:0006554;4.28e-20;30!UBERON:0001008;4.28e-20;30!UBERON:0004211;1.89e-16;10!UBERON:0009773;1.89e-16;10!UBERON:0001231;1.89e-16;10!UBERON:0004810;1.89e-16;10!UBERON:0006555;5.93e-14;15!UBERON:0004819;5.93e-14;15!UBERON:0001285;5.93e-14;15!UBERON:0007684;5.93e-14;15!UBERON:0002113;6.76e-13;24!UBERON:0011143;6.76e-13;24!UBERON:0000489;1.17e-12;29!UBERON:0000365;7.78e-12;5!UBERON:0000945;5.85e-11;5!UBERON:0010039;5.85e-11;5!UBERON:0001851;1.23e-10;15!UBERON:0001225;3.36e-10;12!UBERON:0008987;3.36e-10;12!UBERON:0005409;3.40e-10;22!UBERON:0005910;7.31e-10;6!UBERON:0001737;4.43e-09;9!UBERON:0001557;4.43e-09;9!UBERON:0000353;5.18e-08;15 | |ontology_enrichment_uberon_v019=UBERON:0006554;4.28e-20;30!UBERON:0001008;4.28e-20;30!UBERON:0004211;1.89e-16;10!UBERON:0009773;1.89e-16;10!UBERON:0001231;1.89e-16;10!UBERON:0004810;1.89e-16;10!UBERON:0006555;5.93e-14;15!UBERON:0004819;5.93e-14;15!UBERON:0001285;5.93e-14;15!UBERON:0007684;5.93e-14;15!UBERON:0002113;6.76e-13;24!UBERON:0011143;6.76e-13;24!UBERON:0000489;1.17e-12;29!UBERON:0000365;7.78e-12;5!UBERON:0000945;5.85e-11;5!UBERON:0010039;5.85e-11;5!UBERON:0001851;1.23e-10;15!UBERON:0001225;3.36e-10;12!UBERON:0008987;3.36e-10;12!UBERON:0005409;3.40e-10;22!UBERON:0005910;7.31e-10;6!UBERON:0001737;4.43e-09;9!UBERON:0001557;4.43e-09;9!UBERON:0000353;5.18e-08;15 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,2.21e-16,10;UBERON:0004211,6.66e-14,15;UBERON:0009773,6.66e-14,15;UBERON:0001231,6.66e-14,15;UBERON:0001285,6.66e-14,15;UBERON:0007684,6.66e-14,15;UBERON:0004208,6.66e-14,15;UBERON:0006555,6.05e-13,16;UBERON:0004819,6.05e-13,16;UBERON:0000365,6.47e-12,5;UBERON:0002113,1.08e-11,26;UBERON:0003918,1.08e-11,26;UBERON:0011143,1.08e-11,26;UBERON:0005095,1.08e-11,26;UBERON:0007687,1.08e-11,26;UBERON:0000489,1.22e-11,31;UBERON:0006554,1.37e-11,47;UBERON:0001008,2.81e-11,48;UBERON:0001851,1.70e-10,15;UBERON:0001225,4.59e-10,12;UBERON:0008987,4.59e-10,12;UBERON:0005910,6.28e-10,6;UBERON:0001737,5.81e-09,9;UBERON:0005409,6.66e-09,25;UBERON:0000353,6.60e-08,15;UBERON:0004119,8.34e-08,160;UBERON:0000925,8.34e-08,160;UBERON:0006595,8.34e-08,160;UBERON:0000945,7.06e-07,8;UBERON:0010039,7.06e-07,8;UBERON:0002417,7.46e-07,60;UBERON:0000916,7.46e-07,60;UBERON:0005177,7.93e-07,101;UBERON:0005172,9.80e-07,54;UBERON:0005173,9.80e-07,54 | |||
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| ||
|short_description=p5@ENST00000433510 | |short_description=p5@ENST00000433510 | ||
}} | }} |
Latest revision as of 18:13, 25 July 2015
Short description: | p5@ENST00000433510 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_ENST00000433510_5end |
Coexpression cluster: | C3648_acute_malignant_embryonic_small_transitionalcell_lens_Renal |
Association with transcript: | 233bp_to_ENST00000433510_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 2.21e-16 | 10 |
nephron tubule epithelial cell | 2.21e-16 | 10 |
epithelial cell | 5.21e-14 | 253 |
epithelial cell of nephron | 6.66e-14 | 15 |
kidney cell | 4.24e-12 | 17 |
kidney epithelial cell | 4.24e-12 | 17 |
epithelial cell of stomach | 7.07e-11 | 3 |
kidney cortical cell | 4.59e-10 | 12 |
renal cortical epithelial cell | 4.59e-10 | 12 |
transitional epithelial cell | 1.23e-08 | 4 |
urothelial cell | 1.23e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 2.21e-16 | 10 |
nephron epithelium | 6.66e-14 | 15 |
renal tubule | 6.66e-14 | 15 |
nephron tubule | 6.66e-14 | 15 |
nephron | 6.66e-14 | 15 |
uriniferous tubule | 6.66e-14 | 15 |
nephrogenic mesenchyme | 6.66e-14 | 15 |
excretory tube | 6.05e-13 | 16 |
kidney epithelium | 6.05e-13 | 16 |
urothelium | 6.47e-12 | 5 |
kidney | 1.08e-11 | 26 |
kidney mesenchyme | 1.08e-11 | 26 |
upper urinary tract | 1.08e-11 | 26 |
kidney rudiment | 1.08e-11 | 26 |
kidney field | 1.08e-11 | 26 |
cavitated compound organ | 1.22e-11 | 31 |
urinary system structure | 1.37e-11 | 47 |
renal system | 2.81e-11 | 48 |
cortex | 1.70e-10 | 15 |
cortex of kidney | 4.59e-10 | 12 |
renal parenchyma | 4.59e-10 | 12 |
transitional epithelium | 6.28e-10 | 6 |
larynx | 5.81e-09 | 9 |
gastrointestinal system | 6.66e-09 | 25 |
parenchyma | 6.60e-08 | 15 |
endoderm-derived structure | 8.34e-08 | 160 |
endoderm | 8.34e-08 | 160 |
presumptive endoderm | 8.34e-08 | 160 |
stomach | 7.06e-07 | 8 |
food storage organ | 7.06e-07 | 8 |
abdominal segment of trunk | 7.46e-07 | 60 |
abdomen | 7.46e-07 | 60 |
trunk region element | 7.93e-07 | 101 |
abdomen element | 9.80e-07 | 54 |
abdominal segment element | 9.80e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 1.86e-17 | 143 |
carcinoma | 1.71e-16 | 106 |
cancer | 3.00e-14 | 235 |
disease of cellular proliferation | 9.40e-14 | 239 |
squamous cell carcinoma | 1.47e-08 | 14 |
gastrointestinal system cancer | 6.39e-08 | 14 |
tubular adenocarcinoma | 1.30e-07 | 2 |
adenocarcinoma | 2.05e-07 | 25 |