FFCP PHASE1:Mm9::chr16:90220953..90220970,+: Difference between revisions
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{{FFCP|EntrezGene=20655|HGNC=|MCL_coexpression_id=60|UniProt=P08228|association_with_transcript=-16bp_to_ENSMUST00000023707,NM_011434,uc007zvz.1_5end|description=CAGE_peak_2_at_Sod1_5end|id=chr16:90220953..90220970,+|ontology_enrichment_celltype=CL:0000117!1.65e-10!23;CL:0000337!1.65e-10!23;CL:0000393!6.30e-07!39;CL:0000211!6.30e-07!39|ontology_enrichment_celltype_v019_2=CL:0000117,1.43e-10,23;CL:0000337,1.43e-10,23;CL:0000393,5.95e-07,39;CL:0000211,5.95e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!6.41e-20!52;UBERON:0005068!6.41e-20!52;UBERON:0006241!6.41e-20!52;UBERON:0007135!6.41e-20!52;UBERON:0000955!2.07e-18!50;UBERON:0006238!2.07e-18!50;UBERON:0002616!6.73e-18!49;UBERON:0000033!1.13e-17!63;UBERON:0000073!1.34e-17!75;UBERON:0001016!1.34e-17!75;UBERON:0001017!2.31e-17!73;UBERON:0005743!2.31e-17!73;UBERON:0002020!3.51e-17!34;UBERON:0002346!6.34e-17!71;UBERON:0003075!6.34e-17!71;UBERON:0007284!6.34e-17!71;UBERON:0004121!1.54e-16!102;UBERON:0000924!1.54e-16!102;UBERON:0006601!1.54e-16!102;UBERON:0003080!4.78e-15!40;UBERON:0002780!2.18e-14!39;UBERON:0001890!2.18e-14!39;UBERON:0006240!2.18e-14!39;UBERON:0002791!2.99e-14!29;UBERON:0003528!2.99e-14!29;UBERON:0001893!2.99e-14!29;UBERON:0003056!1.89e-13!49;UBERON:0000956!1.39e-10!21;UBERON:0001869!1.39e-10!21;UBERON:0000203!1.39e-10!21;UBERON:0000025!2.63e-09!114;UBERON:0004111!4.27e-09!122;UBERON:0002619!1.53e-08!17;UBERON:0002021!1.56e-07!10;UBERON:0000411!1.56e-07!10;UBERON:0001950!1.56e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0000073,6.83e-21,54;UBERON:0001049,6.87e-20,52;UBERON:0005068,6.87e-20,52;UBERON:0006241,6.87e-20,52;UBERON:0007135,6.87e-20,52;UBERON:0001016,1.45e-17,75;UBERON:0001017,2.50e-17,73;UBERON:0002020,2.73e-17,34;UBERON:0010314,4.05e-17,92;UBERON:0000955,9.32e-17,47;UBERON:0006238,9.32e-17,47;UBERON:0002346,1.40e-16,64;UBERON:0003075,1.40e-16,64;UBERON:0007284,1.40e-16,64;UBERON:0002616,2.98e-16,46;UBERON:0010371,5.91e-16,73;UBERON:0004121,8.76e-16,95;UBERON:0000924,8.76e-16,95;UBERON:0006601,8.76e-16,95;UBERON:0003080,4.08e-15,40;UBERON:0002780,1.88e-14,39;UBERON:0001890,1.88e-14,39;UBERON:0006240,1.88e-14,39;UBERON:0003528,2.44e-14,29;UBERON:0002791,2.44e-14,29;UBERON:0001893,2.44e-14,29;UBERON:0003056,1.64e-13,49;UBERON:0000956,1.20e-10,21;UBERON:0001869,1.20e-10,21;UBERON:0000203,1.20e-10,21;UBERON:0000025,2.48e-09,114;UBERON:0004111,4.71e-09,122;UBERON:0002619,1.37e-08,17;UBERON:0002021,1.42e-07,10;UBERON:0000411,1.42e-07,10;UBERON:0001950,1.42e-07,10|phase1_expression=4.96461426024861,1.39590163055744,1.81999695755814,1.81478526784098,1.50268718983904,0.503637815735669,0.233612640595526,0.258246646883153,0,0.468129052643987,0.171217968225505,0.398860794976682,0.342401459862411,0.524522414513984,0,2.02475267389826,1.39912375625629,0.473193248037357,0.548457734422955,0,5.10259740906419,0.695036658406197,0.522399578277871,0.95995453676044,1.14704640533585,1.14846392823004,1.29228598847722,0.646413698057667,0.760093677825496,1.51218077855958,2.66076612786366,0.635030673459631,1.23012957516914,0,1.44425809875637,1.82858109894342,0.612508068787107,0,1.5626706890476,0,0.588231488031014,0.683045484958446,0,2.7697299954627,3.54819259268301,2.56965453026354,0.782391344348039,2.18025156380447,2.41654801007919,3.88859798148567,1.95980990275508,1.43752564364972,0.671130424230945,0,0.672187598284928,4.3734104126111,3.15186783932632,3.6097046459421,4.85559506063035,5.81890077199236,3.1691570175309,1.35537812827653,2.66788438833342,1.7997994345628,2.96659908770092,0.7104801149461,2.39680088414724,2.30530983192933,5.28817022773236,7.42532660824299,6.94072372459561,11.1403883917483,8.39300455616131,3.91970557487853,2.97120960156533,1.83843757322004,4.40463523997555,10.5980490610706,7.68032666281217,4.61602007055678,2.92760459527711,5.2091337055676,16.1926139420801,9.00420176050688,6.26472815884921,8.83885756421003,8.11518580554887,6.15118171223492,2.65041676666144,2.87171928405785,5.2175607966302,0,3.39985666853875,1.61910957491345,1.94932925234301,0.448026887097336,2.94933282276679,3.74946709671727,2.59786004602869,3.88673531961374,2.67602497575693,1.28326477414318,0,0,1.94841936910093,1.77351905832569,3.0331466700887,2.2836775943812,0.258937883647172,2.9688427812965,1.73485326766136,4.56698217468212,2.7673859670727,3.76806601381556,1.05829836422134,3.14166478324189,0.741584903203122,2.02439099687876,0.884610551949874,3.558870698843,1.54589062922275,0,3.72783522436244,10.5401086924157,7.12118803165747,1.27728527604296,3.35482348616577,1.19980546198682,1.77898317902291,11.3840885947665,8.23501085073528,5.52879149296603,9.56033761057521,10.7400492078739,10.1816141834184,9.24775199486219,4.58277137326423,1.8661045591514,6.57079171927554,1.05220927943237,1.30120442962704,2.98872735763515,1.26043490863744,2.71268672104287,1.76894897793452,3.71529788826064,2.43624483855295,3.88055056108524,0.646703978798527,1.13463648100692,1.40760899331159,2.84954452155847,2.22437799380478,1.741260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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:20655 | |||
|HGNC= | |||
|MCL_coexpression_id=60 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:P08228 | |||
|association_with_transcript=-16bp_to_ENSMUST00000023707,NM_011434,uc007zvz.1_5end | |||
|cluster_id=chr16:90220953..90220970,+ | |||
|description=CAGE_peak_2_at_Sod1_5end | |||
|id=chr16:90220953..90220970,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.65e-10!23;CL:0000337!1.65e-10!23;CL:0000393!6.30e-07!39;CL:0000211!6.30e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.43e-10,23;CL:0000337,1.43e-10,23;CL:0000393,5.95e-07,39;CL:0000211,5.95e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!6.41e-20!52;UBERON:0005068!6.41e-20!52;UBERON:0006241!6.41e-20!52;UBERON:0007135!6.41e-20!52;UBERON:0000955!2.07e-18!50;UBERON:0006238!2.07e-18!50;UBERON:0002616!6.73e-18!49;UBERON:0000033!1.13e-17!63;UBERON:0000073!1.34e-17!75;UBERON:0001016!1.34e-17!75;UBERON:0001017!2.31e-17!73;UBERON:0005743!2.31e-17!73;UBERON:0002020!3.51e-17!34;UBERON:0002346!6.34e-17!71;UBERON:0003075!6.34e-17!71;UBERON:0007284!6.34e-17!71;UBERON:0004121!1.54e-16!102;UBERON:0000924!1.54e-16!102;UBERON:0006601!1.54e-16!102;UBERON:0003080!4.78e-15!40;UBERON:0002780!2.18e-14!39;UBERON:0001890!2.18e-14!39;UBERON:0006240!2.18e-14!39;UBERON:0002791!2.99e-14!29;UBERON:0003528!2.99e-14!29;UBERON:0001893!2.99e-14!29;UBERON:0003056!1.89e-13!49;UBERON:0000956!1.39e-10!21;UBERON:0001869!1.39e-10!21;UBERON:0000203!1.39e-10!21;UBERON:0000025!2.63e-09!114;UBERON:0004111!4.27e-09!122;UBERON:0002619!1.53e-08!17;UBERON:0002021!1.56e-07!10;UBERON:0000411!1.56e-07!10;UBERON:0001950!1.56e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,6.83e-21,54;UBERON:0001049,6.87e-20,52;UBERON:0005068,6.87e-20,52;UBERON:0006241,6.87e-20,52;UBERON:0007135,6.87e-20,52;UBERON:0001016,1.45e-17,75;UBERON:0001017,2.50e-17,73;UBERON:0002020,2.73e-17,34;UBERON:0010314,4.05e-17,92;UBERON:0000955,9.32e-17,47;UBERON:0006238,9.32e-17,47;UBERON:0002346,1.40e-16,64;UBERON:0003075,1.40e-16,64;UBERON:0007284,1.40e-16,64;UBERON:0002616,2.98e-16,46;UBERON:0010371,5.91e-16,73;UBERON:0004121,8.76e-16,95;UBERON:0000924,8.76e-16,95;UBERON:0006601,8.76e-16,95;UBERON:0003080,4.08e-15,40;UBERON:0002780,1.88e-14,39;UBERON:0001890,1.88e-14,39;UBERON:0006240,1.88e-14,39;UBERON:0003528,2.44e-14,29;UBERON:0002791,2.44e-14,29;UBERON:0001893,2.44e-14,29;UBERON:0003056,1.64e-13,49;UBERON:0000956,1.20e-10,21;UBERON:0001869,1.20e-10,21;UBERON:0000203,1.20e-10,21;UBERON:0000025,2.48e-09,114;UBERON:0004111,4.71e-09,122;UBERON:0002619,1.37e-08,17;UBERON:0002021,1.42e-07,10;UBERON:0000411,1.42e-07,10;UBERON:0001950,1.42e-07,10 | |||
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| |||
|short_description=p2@Sod1 | |||
}} |
Revision as of 04:06, 4 August 2015
Short description: | p2@Sod1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Sod1_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | -16bp_to_ENSMUST00000023707, NM_011434, uc007zvz.1_5end |
EntrezGene: | 20655 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.43e-10 | 23 |
neuroblast (sensu Vertebrata) | 1.43e-10 | 23 |
electrically responsive cell | 5.95e-07 | 39 |
electrically active cell | 5.95e-07 | 39 |