FFCP PHASE1:Mm9::chr19:46574657..46574687,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=108 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:46574657..46574687,+ | |||
|description=CAGE_peak_at_chr19:46574657..46574687,+ | |description=CAGE_peak_at_chr19:46574657..46574687,+ | ||
|id=chr19:46574657..46574687,+ | |id=chr19:46574657..46574687,+ | ||
|ontology_enrichment_celltype=CL:0002319!3.96e-16!43;CL:0000221!3.71e-15!44;CL:0000133!3.71e-15!44;CL:0000055!5.38e-14!50;CL:0000540!2.49e-12!33;CL:0000047!2.49e-12!33;CL:0000031!2.49e-12!33;CL:0000404!2.49e-12!33;CL:0000117!2.24e-11!23;CL:0000337!2.24e-11!23;CL:0000393!4.54e-10!39;CL:0000211!4.54e-10!39;CL:0002371!1.34e-09!118;CL:0000548!2.60e-09!115;CL:0000004!2.60e-09!115;CL:0000255!2.60e-09!115;CL:0002321!3.68e-09!70;CL:0000220!3.68e-09!70;CL:0000144!4.35e-09!121;CL:0000012!4.35e-09!121;CL:0000723!4.97e-09!91;CL:0000048!4.97e-09!91;CL:0000034!1.33e-07!97 | |ontology_enrichment_celltype=CL:0002319!3.96e-16!43;CL:0000221!3.71e-15!44;CL:0000133!3.71e-15!44;CL:0000055!5.38e-14!50;CL:0000540!2.49e-12!33;CL:0000047!2.49e-12!33;CL:0000031!2.49e-12!33;CL:0000404!2.49e-12!33;CL:0000117!2.24e-11!23;CL:0000337!2.24e-11!23;CL:0000393!4.54e-10!39;CL:0000211!4.54e-10!39;CL:0002371!1.34e-09!118;CL:0000548!2.60e-09!115;CL:0000004!2.60e-09!115;CL:0000255!2.60e-09!115;CL:0002321!3.68e-09!70;CL:0000220!3.68e-09!70;CL:0000144!4.35e-09!121;CL:0000012!4.35e-09!121;CL:0000723!4.97e-09!91;CL:0000048!4.97e-09!91;CL:0000034!1.33e-07!97 | ||
|ontology_enrichment_celltype_v019_2=CL:0002319,3.85e-16,43;CL:0000221,3.62e-15,44;CL:0000133,3.62e-15,44;CL:0000540,2.43e-12,33;CL:0000047,2.43e-12,33;CL:0000031,2.43e-12,33;CL:0000404,2.43e-12,33;CL:0000117,2.20e-11,23;CL:0000337,2.20e-11,23;CL:0000393,4.42e-10,39;CL:0000211,4.42e-10,39;CL:0002321,2.87e-09,70;CL:0000723,3.65e-09,91;CL:0000048,3.65e-09,91;CL:0000034,1.09e-07,97 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!7.62e-21!75;UBERON:0001016!7.62e-21!75;UBERON:0001017!3.34e-20!73;UBERON:0005743!3.34e-20!73;UBERON:0002020!3.50e-15!34;UBERON:0001049!7.99e-15!52;UBERON:0005068!7.99e-15!52;UBERON:0006241!7.99e-15!52;UBERON:0007135!7.99e-15!52;UBERON:0002346!1.06e-14!71;UBERON:0003075!1.06e-14!71;UBERON:0007284!1.06e-14!71;UBERON:0004121!7.85e-14!102;UBERON:0000924!7.85e-14!102;UBERON:0006601!7.85e-14!102;UBERON:0003056!2.15e-13!49;UBERON:0002780!1.94e-12!39;UBERON:0001890!1.94e-12!39;UBERON:0006240!1.94e-12!39;UBERON:0002791!2.85e-12!29;UBERON:0003528!2.85e-12!29;UBERON:0001893!2.85e-12!29;UBERON:0003080!3.45e-12!40;UBERON:0000955!3.71e-12!50;UBERON:0006238!3.71e-12!50;UBERON:0002616!7.77e-12!49;UBERON:0000033!1.72e-11!63;UBERON:0000956!1.71e-10!21;UBERON:0001869!1.71e-10!21;UBERON:0000203!1.71e-10!21;UBERON:0007811!4.46e-09!86;UBERON:0000153!7.60e-09!94;UBERON:0002619!2.18e-08!17 | |ontology_enrichment_uberon=UBERON:0000073!7.62e-21!75;UBERON:0001016!7.62e-21!75;UBERON:0001017!3.34e-20!73;UBERON:0005743!3.34e-20!73;UBERON:0002020!3.50e-15!34;UBERON:0001049!7.99e-15!52;UBERON:0005068!7.99e-15!52;UBERON:0006241!7.99e-15!52;UBERON:0007135!7.99e-15!52;UBERON:0002346!1.06e-14!71;UBERON:0003075!1.06e-14!71;UBERON:0007284!1.06e-14!71;UBERON:0004121!7.85e-14!102;UBERON:0000924!7.85e-14!102;UBERON:0006601!7.85e-14!102;UBERON:0003056!2.15e-13!49;UBERON:0002780!1.94e-12!39;UBERON:0001890!1.94e-12!39;UBERON:0006240!1.94e-12!39;UBERON:0002791!2.85e-12!29;UBERON:0003528!2.85e-12!29;UBERON:0001893!2.85e-12!29;UBERON:0003080!3.45e-12!40;UBERON:0000955!3.71e-12!50;UBERON:0006238!3.71e-12!50;UBERON:0002616!7.77e-12!49;UBERON:0000033!1.72e-11!63;UBERON:0000956!1.71e-10!21;UBERON:0001869!1.71e-10!21;UBERON:0000203!1.71e-10!21;UBERON:0007811!4.46e-09!86;UBERON:0000153!7.60e-09!94;UBERON:0002619!2.18e-08!17 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,7.34e-21,75;UBERON:0001017,3.23e-20,73;UBERON:0002346,2.19e-16,64;UBERON:0003075,2.19e-16,64;UBERON:0007284,2.19e-16,64;UBERON:0002020,3.41e-15,34;UBERON:0004121,6.94e-15,95;UBERON:0000924,6.94e-15,95;UBERON:0006601,6.94e-15,95;UBERON:0001049,7.78e-15,52;UBERON:0005068,7.78e-15,52;UBERON:0006241,7.78e-15,52;UBERON:0007135,7.78e-15,52;UBERON:0000073,1.47e-14,54;UBERON:0003056,2.30e-13,49;UBERON:0002780,1.90e-12,39;UBERON:0001890,1.90e-12,39;UBERON:0006240,1.90e-12,39;UBERON:0000955,1.95e-12,47;UBERON:0006238,1.95e-12,47;UBERON:0003528,2.80e-12,29;UBERON:0002791,2.80e-12,29;UBERON:0001893,2.80e-12,29;UBERON:0003080,3.38e-12,40;UBERON:0002616,4.10e-12,46;UBERON:0010371,5.10e-11,73;UBERON:0000956,1.68e-10,21;UBERON:0001869,1.68e-10,21;UBERON:0000203,1.68e-10,21;UBERON:0010314,1.98e-08,92;UBERON:0002619,2.15e-08,17 | |||
|phase1_expression=2.88267924788629,3.14077866875425,4.09499315450582,2.41971369045464,3.50627010962443,1.17515490338323,1.86890112476421,3.35720640948098,6.75785866328,11.0010327371337,1.19852577757853,1.27635454392538,3.25281386869291,1.83582845079895,0.999329285446988,3.23960427823721,0,4.57420139769445,4.38766187538364,5.09267582157636,2.97651515528744,2.38298282882125,1.30599894569468,1.59992422793407,2.06468352960453,0,0.86152399231815,2.37018355954478,1.14014051673824,0.504060259519861,2.21730510655305,5.71527606113668,4.92051830067656,0,0.288851619751275,0.332469290716985,1.22501613757421,5.02237956884289,3.1253413780952,2.61761871986899,5.29408339227913,6.14740936462601,4.85510353031154,2.14024590558481,2.73717714292689,3.67093504323363,11.7358701652206,4.36050312760893,5.93152693383074,5.63846707315422,4.75953833526233,4.31257693094915,5.87239121202077,7.97898356212479,3.6970317905671,4.11615097657515,1.43266719969378,0.515672092277442,12.3413041124355,15.340738398889,15.8457850876545,6.43804610931351,5.33576877666684,4.49949858640699,5.93319817540185,8.5257613793532,5.39280198933128,6.91592949578798,14.4128561108784,16.3357185381346,11.567872874326,6.56997264128748,6.62605622854841,12.3715707207104,17.2521847832825,12.8690630125403,2.20231761998777,2.93680877595932,4.30098293117482,12.6610836220986,8.32537556781928,9.37644067002168,4.18774498502071,4.50210088025344,3.36156145108982,7.07108605136802,8.39992916714707,13.6071595452469,4.99792875999015,4.08086424576642,3.18850937571846,4.30211938490693,3.39985666853875,0.539703191637817,0,2.24013443548668,1.68533304158102,7.6693645160126,5.97507810586598,8.12681021373782,1.26759077799012,6.41632387071589,2.54805239706646,7.11066703153331,3.89683873820185,3.80039798212648,3.53867111510348,1.94112595522402,1.29468941823586,2.07818994690755,2.4287945747259,3.34912026143355,2.7673859670727,3.91878865436819,1.88141931417128,1.75933227861546,1.23597483867187,1.15679485535929,3.5384422077995,1.29413479957927,1.10420759230197,1.93950101254089,0,2.04946557908083,3.35114730901528,0.510914110417183,2.27648736561249,1.79970819298022,3.17675567682662,2.69623150928681,1.37250180845588,9.04711335212624,4.17178368461463,4.85859368927628,3.94797284663164,2.43361894601636,2.03678727700633,2.11491850037158,1.26361379216837,0.841767423545896,5.20481771850815,5.28774840196988,6.12211241338187,7.08312643827861,3.81004395247436,5.12454881139399,3.74806898238915,2.58703370739016,4.74249584452253,3.59301552318857,2.46331573829528,3.5071317188412,3.61461423993277,1.74126083261083,2.88094990971121,2.58744546864041,2.80885274925294,2.83082697826187,1.98914449576915,4.76389276831654,1.87620847984877,1.98068267607116,1.42046841351126,2.75469924446365,3.85667782218446,2.55787339225449,2.68273401399619,1.16765342367169,1.48103864922132,1.80584210487005,2.1888578577381,1.90059983652932,0.439100230582101,1.34206418760372,6.09840850835969,6.5858951922742,0.991256348951394,1.32225283331772,2.98603550749328,4.64473343720877,3.60828891701861,1.81515172161008,1.77902435075896,3.04361001780095,0.949058123089023,2.63518327558417,1.25667604400135,1.59165177632921,1.55971269695296,0.898819408654221,1.51296634912286,0.796565093017469,3.98302592001472,3.08470984046268,2.25415471346161,2.44381593414377,3.49114476901726,2.52488951605147,1.64414996523069,0.885660887877613,2.19798218977925,2.34454611451421,1.77871576252289,1.66845105716094,0.786235980452812,2.9232074610031,1.01430060694251,3.85883455603867,3.31013607315846,2.87696137450811,4.53978634970099,1.92192989231657,1.43768206527355,0.744281895337007,1.87222603868736,2.02063102357689,0.896987067609561,2.41221760681684,2.21703828199926,2.65287976478679,3.58522948172457,1.69745085775188,2.81628297946203,4.52266895092903,4.99891645860629,4.68320754858717,3.78324345854858,2.6575762757853,3.34855014180723,3.93271955317771,4.48980952851328,4.91806799177139,3.01582567878545,2.71952841909355,0.491764273019036,1.37968373152366,2.88991061978026,2.57865710502847,2.45902418065013,2.01976741763498,2.2085575359138,4.29482618726302,5.17016154558717,3.34556317133573,4.67877215573028,6.22768367735431,3.23848561339915,4.38383786866968,5.92931666919785,4.81981974632711,2.41298144854057,2.67098405500883,2.93196526836437,3.46437258242324,1.32745138339963,3.39892890616974,2.11626489875326,1.88605079755898,2.65771703592696,2.15204603560749,1.55056975900933,2.18120237686503,1.06949213515416,0.316036757935816,2.10837217149998,2.06271086496374,1.70219802876894,2.88097750450096,4.39819524861365,5.78709994585299,5.85222771019503,4.99432689285798,2.63278432963394,4.87143918583359,0.938686832254841,1.0591603543191,0.441056796109924,1.6488625294148,2.26050197374268,0.72375509913787,1.07435109602823,0.656563598980245,0.291480836629851,3.15223013417866,2.05045056957423,2.47664241555867,1.66675074632741,1.13021074202815,1.36694227721025,2.0590035588587,1.35982743995084,2.23922323717853,2.9021994498929,0,2.21435195506795,2.43983360552218,2.48412283890143,3.13632444021703,2.62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|phase1_expression=2.88267924788629,3.14077866875425,4.09499315450582,2.41971369045464,3.50627010962443,1.17515490338323,1.86890112476421,3.35720640948098,6.75785866328,11.0010327371337,1.19852577757853,1.27635454392538,3.25281386869291,1.83582845079895,0.999329285446988,3.23960427823721,0,4.57420139769445,4.38766187538364,5.09267582157636,2.97651515528744,2.38298282882125,1.30599894569468,1.59992422793407,2.06468352960453,0,0.86152399231815,2.37018355954478,1.14014051673824,0.504060259519861,2.21730510655305,5.71527606113668,4.92051830067656,0,0.288851619751275,0.332469290716985,1.22501613757421,5.02237956884289,3.1253413780952,2.61761871986899,5.29408339227913,6.14740936462601,4.85510353031154,2.14024590558481,2.73717714292689,3.67093504323363,11.7358701652206,4.36050312760893,5.93152693383074,5.63846707315422,4.75953833526233,4.31257693094915,5.87239121202077,7.97898356212479,3.6970317905671,4.11615097657515,1.43266719969378,0.515672092277442,12.3413041124355,15.340738398889,15.8457850876545,6.43804610931351,5.33576877666684,4.49949858640699,5.93319817540185,8.5257613793532,5.39280198933128,6.91592949578798,14.4128561108784,16.3357185381346,11.567872874326,6.56997264128748,6.62605622854841,12.3715707207104,17.2521847832825,12.8690630125403,2.20231761998777,2.93680877595932,4.30098293117482,12.6610836220986,8.32537556781928,9.37644067002168,4.18774498502071,4.50210088025344,3.36156145108982,7.07108605136802,8.39992916714707,13.6071595452469,4.99792875999015,4.08086424576642,3.18850937571846,4.30211938490693,3.39985666853875,0.539703191637817,0,2.24013443548668,1.68533304158102,7.6693645160126,5.97507810586598,8.12681021373782,1.26759077799012,6.41632387071589,2.54805239706646,7.11066703153331,3.89683873820185,3.80039798212648,3.53867111510348,1.94112595522402,1.29468941823586,2.07818994690755,2.4287945747259,3.34912026143355,2.7673859670727,3.91878865436819,1.88141931417128,1.75933227861546,1.23597483867187,1.15679485535929,3.5384422077995,1.29413479957927,1.10420759230197,1.93950101254089,0,2.04946557908083,3.35114730901528,0.510914110417183,2.27648736561249,1.79970819298022,3.17675567682662,2.69623150928681,1.37250180845588,9.04711335212624,4.17178368461463,4.85859368927628,3.94797284663164,2.43361894601636,2.03678727700633,2.11491850037158,1.26361379216837,0.841767423545896,5.20481771850815,5.28774840196988,6.12211241338187,7.08312643827861,3.81004395247436,5.12454881139399,3.74806898238915,2.58703370739016,4.74249584452253,3.59301552318857,2.46331573829528,3.5071317188412,3.61461423993277,1.74126083261083,2.88094990971121,2.58744546864041,2.80885274925294,2.83082697826187,1.98914449576915,4.76389276831654,1.87620847984877,1.98068267607116,1.42046841351126,2.75469924446365,3.85667782218446,2.55787339225449,2.68273401399619,1.16765342367169,1.48103864922132,1.80584210487005,2.1888578577381,1.90059983652932,0.439100230582101,1.34206418760372,6.09840850835969,6.5858951922742,0.991256348951394,1.32225283331772,2.98603550749328,4.64473343720877,3.60828891701861,1.81515172161008,1.77902435075896,3.04361001780095,0.949058123089023,2.63518327558417,1.25667604400135,1.59165177632921,1.55971269695296,0.898819408654221,1.51296634912286,0.796565093017469,3.98302592001472,3.08470984046268,2.25415471346161,2.44381593414377,3.49114476901726,2.52488951605147,1.64414996523069,0.885660887877613,2.19798218977925,2.34454611451421,1.77871576252289,1.66845105716094,0.786235980452812,2.9232074610031,1.01430060694251,3.85883455603867,3.31013607315846,2.87696137450811,4.53978634970099,1.92192989231657,1.43768206527355,0.744281895337007,1.87222603868736,2.02063102357689,0.896987067609561,2.41221760681684,2.21703828199926,2.65287976478679,3.58522948172457,1.69745085775188,2.81628297946203,4.52266895092903,4.99891645860629,4.68320754858717,3.78324345854858,2.6575762757853,3.34855014180723,3.93271955317771,4.48980952851328,4.91806799177139,3.01582567878545,2.71952841909355,0.491764273019036,1.37968373152366,2.88991061978026,2.57865710502847,2.45902418065013,2.01976741763498,2.2085575359138,4.29482618726302,5.17016154558717,3.34556317133573,4.67877215573028,6.22768367735431,3.23848561339915,4.38383786866968,5.92931666919785,4.81981974632711,2.41298144854057,2.67098405500883,2.93196526836437,3.46437258242324,1.32745138339963,3.39892890616974,2.11626489875326,1.88605079755898,2.65771703592696,2.15204603560749,1.55056975900933,2.18120237686503,1.06949213515416,0.316036757935816,2.10837217149998,2.06271086496374,1.70219802876894,2.88097750450096,4.39819524861365,5.78709994585299,5.85222771019503,4.99432689285798,2.63278432963394,4.87143918583359,0.938686832254841,1.0591603543191,0.441056796109924,1.6488625294148,2.26050197374268,0.72375509913787,1.07435109602823,0.656563598980245,0.291480836629851,3.15223013417866,2.05045056957423,2.47664241555867,1.66675074632741,1.13021074202815,1.36694227721025,2.0590035588587,1.35982743995084,2.23922323717853,2.9021994498929,0,2.21435195506795,2.43983360552218,2.48412283890143,3.13632444021703,2.62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| ||
|short_description=p@chr19:46574657..46574687,+ | |short_description=p@chr19:46574657..46574687,+ | ||
}} | }} |
Latest revision as of 05:44, 4 August 2015
Short description: | p@chr19:46574657..46574687, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:46574657..46574687, + |
Coexpression cluster: | MCL_coexpression_mm9:108 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 3.85e-16 | 43 |
ectodermal cell | 3.62e-15 | 44 |
neurectodermal cell | 3.62e-15 | 44 |
neuron | 2.43e-12 | 33 |
neuronal stem cell | 2.43e-12 | 33 |
neuroblast | 2.43e-12 | 33 |
electrically signaling cell | 2.43e-12 | 33 |
CNS neuron (sensu Vertebrata) | 2.20e-11 | 23 |
neuroblast (sensu Vertebrata) | 2.20e-11 | 23 |
electrically responsive cell | 4.42e-10 | 39 |
electrically active cell | 4.42e-10 | 39 |
embryonic cell | 2.87e-09 | 70 |
somatic stem cell | 3.65e-09 | 91 |
multi fate stem cell | 3.65e-09 | 91 |
stem cell | 1.09e-07 | 97 |
Ontology term | p-value | n |
---|---|---|
nervous system | 7.34e-21 | 75 |
central nervous system | 3.23e-20 | 73 |
neurectoderm | 2.19e-16 | 64 |
neural plate | 2.19e-16 | 64 |
presumptive neural plate | 2.19e-16 | 64 |
gray matter | 3.41e-15 | 34 |
ectoderm-derived structure | 6.94e-15 | 95 |
ectoderm | 6.94e-15 | 95 |
presumptive ectoderm | 6.94e-15 | 95 |
neural tube | 7.78e-15 | 52 |
neural rod | 7.78e-15 | 52 |
future spinal cord | 7.78e-15 | 52 |
neural keel | 7.78e-15 | 52 |
regional part of nervous system | 1.47e-14 | 54 |
pre-chordal neural plate | 2.30e-13 | 49 |
regional part of forebrain | 1.90e-12 | 39 |
forebrain | 1.90e-12 | 39 |
future forebrain | 1.90e-12 | 39 |
brain | 1.95e-12 | 47 |
future brain | 1.95e-12 | 47 |
brain grey matter | 2.80e-12 | 29 |
regional part of telencephalon | 2.80e-12 | 29 |
telencephalon | 2.80e-12 | 29 |
anterior neural tube | 3.38e-12 | 40 |
regional part of brain | 4.10e-12 | 46 |
ecto-epithelium | 5.10e-11 | 73 |
cerebral cortex | 1.68e-10 | 21 |
cerebral hemisphere | 1.68e-10 | 21 |
pallium | 1.68e-10 | 21 |
structure with developmental contribution from neural crest | 1.98e-08 | 92 |
regional part of cerebral cortex | 2.15e-08 | 17 |