FFCP PHASE1:Mm9::chr4:132895198..132895249,-: Difference between revisions
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{{FFCP|EntrezGene=230796|HGNC=|MCL_coexpression_id=1132|UniProt=Q80ZK9,A2AE97|association_with_transcript=0bp_to_ENSMUST00000043305,NM_199306,uc012dml.1_5end|description=CAGE_peak_1_at_Wdtc1_5end|id=chr4:132895198..132895249,-|ontology_enrichment_celltype=CL:0000117!2.72e-07!23;CL:0000337!2.72e-07!23|ontology_enrichment_celltype_v019_2=CL:0000117,2.72e-07,23;CL:0000337,2.72e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000955!1.99e-17!50;UBERON:0006238!1.99e-17!50;UBERON:0002616!4.64e-17!49;UBERON:0001049!1.99e-16!52;UBERON:0005068!1.99e-16!52;UBERON:0006241!1.99e-16!52;UBERON:0007135!1.99e-16!52;UBERON:0001017!3.79e-15!73;UBERON:0005743!3.79e-15!73;UBERON:0000033!4.18e-15!63;UBERON:0000073!4.67e-14!75;UBERON:0001016!4.67e-14!75;UBERON:0003080!1.16e-12!40;UBERON:0002020!1.84e-12!34;UBERON:0004121!2.04e-12!102;UBERON:0000924!2.04e-12!102;UBERON:0006601!2.04e-12!102;UBERON:0002791!3.34e-12!29;UBERON:0003528!3.34e-12!29;UBERON:0001893!3.34e-12!29;UBERON:0002780!4.10e-12!39;UBERON:0001890!4.10e-12!39;UBERON:0006240!4.10e-12!39;UBERON:0002346!1.74e-11!71;UBERON:0003075!1.74e-11!71;UBERON:0007284!1.74e-11!71;UBERON:0003056!6.56e-10!49;UBERON:0007811!1.25e-09!86;UBERON:0000956!1.52e-09!21;UBERON:0001869!1.52e-09!21;UBERON:0000203!1.52e-09!21;UBERON:0004111!2.90e-09!122;UBERON:0000153!2.05e-08!94;UBERON:0000025!3.51e-08!114;UBERON:0002619!4.50e-08!17;UBERON:0000483!6.89e-07!181|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.59e-17,54;UBERON:0001049,1.99e-16,52;UBERON:0005068,1.99e-16,52;UBERON:0006241,1.99e-16,52;UBERON:0007135,1.99e-16,52;UBERON:0000955,1.05e-15,47;UBERON:0006238,1.05e-15,47;UBERON:0002616,2.40e-15,46;UBERON:0001017,3.79e-15,73;UBERON:0001016,4.67e-14,75;UBERON:0003080,1.16e-12,40;UBERON:0004121,1.77e-12,95;UBERON:0000924,1.77e-12,95;UBERON:0006601,1.77e-12,95;UBERON:0002020,1.83e-12,34;UBERON:0003528,3.34e-12,29;UBERON:0002791,3.34e-12,29;UBERON:0001893,3.34e-12,29;UBERON:0002780,4.10e-12,39;UBERON:0001890,4.10e-12,39;UBERON:0006240,4.10e-12,39;UBERON:0002346,8.26e-12,64;UBERON:0003075,8.26e-12,64;UBERON:0007284,8.26e-12,64;UBERON:0010314,1.11e-11,92;UBERON:0010371,1.52e-11,73;UBERON:0003056,6.56e-10,49;UBERON:0000956,1.52e-09,21;UBERON:0001869,1.52e-09,21;UBERON:0000203,1.52e-09,21;UBERON:0004111,2.90e-09,122;UBERON:0000025,3.51e-08,114;UBERON:0002619,4.50e-08,17|phase1_expression=7.36684696682052,19.1936474201649,17.2899710968024,29.0365642854557,23.041203577532,7.89032577985882,4.67225281191051,9.8133725815598,1.267098499365,0.936258105287974,1.02730780935303,0.8774937489487,3.25281386869291,7.51815460803378,0.666219523631325,1.61980213911861,4.89693314689703,5.0473946457318,5.48457734422955,3.81950686618227,14.2022294552287,5.36171136484781,3.39559725880616,5.43974237497583,6.8822784320151,16.6527269593356,12.0613358924541,8.18790684206378,10.8313349090133,16.8860186939154,6.87364583031445,3.81018404075779,4.92051830067656,0,4.04392267651784,3.65716219788683,3.06254034393554,14.2300754450549,8.5946887897618,15.1821885752402,16.4704816648684,20.4913645487534,21.3624555333708,3.52511090331616,3.75094645512204,1.83546752161682,13.3006528539167,11.9913836009246,12.5221124158649,10.6936444490856,8.9591309840232,2.87505128729943,6.71130424230945,2.17608642603403,7.05796978199174,2.05807548828758,5.44413535883638,4.64104883049698,12.5436205732951,8.46385566835253,11.4089652631112,4.74382344896785,4.4464739805557,17.5480444869873,10.8775299882367,13.4991221839759,11.3848041996994,23.8215349299364,11.4058573539325,13.3655878948374,12.6194976810829,12.2829923293636,9.49734726091938,10.2892271340561,13.801747826626,12.8690630125403,15.4162233399144,22.472971502993,22.5801603886678,12.3973110466382,17.3826522844578,9.37644067002168,25.1264699101243,9.56696437053856,13.9046405476897,8.54422897873636,7.97281412474976,8.38797506213853,3.40767869999328,4.98772296704784,4.92769630792852,10.3250865237766,5.439770669662,21.0484244738749,14.2950811838487,10.3046184032387,16.1511083151515,3.74946709671727,1.81850203222008,1.41335829804136,10.8449433228044,10.2661181931454,5.09610479413291,21.3320010945999,0.649473123033642,3.29367825117628,1.01104889002957,15.186456002635,4.91981978929626,14.2504453502232,4.3371331691534,6.08930956624282,7.84092690670599,5.57673770044703,5.87943535678524,10.9329934456818,5.6854842578906,9.68815691363408,4.42305275974937,5.17653919831709,10.6003928860989,9.69750506270444,9.31958806090611,16.9812862266697,14.0329293565015,12.2619386500124,3.47463861067169,2.39961092397363,3.17675567682662,20.8208988772704,16.4700217014706,12.5654352112864,22.5971616249959,23.2701066170601,19.1165000994795,21.0913641988085,4.17541391786297,8.08645308965605,9.85618757891331,11.7847439296425,5.07469727554544,3.21862946206862,6.12211241338187,3.76762044589288,5.8511389270142,4.22775276940004,6.46541899462129,10.6068382002996,5.82033580918674,3.78212160335639,4.75068035242662,6.35667624039967,6.67313398141435,6.268538997399,5.9676819558303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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:230796 | |||
|HGNC= | |||
|MCL_coexpression_id=1132 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q80ZK9,uniprot:A2AE97 | |||
|association_with_transcript=0bp_to_ENSMUST00000043305,NM_199306,uc012dml.1_5end | |||
|cluster_id=chr4:132895198..132895249,- | |||
|description=CAGE_peak_1_at_Wdtc1_5end | |||
|id=chr4:132895198..132895249,- | |||
|ontology_enrichment_celltype=CL:0000117!2.72e-07!23;CL:0000337!2.72e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.72e-07,23;CL:0000337,2.72e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000955!1.99e-17!50;UBERON:0006238!1.99e-17!50;UBERON:0002616!4.64e-17!49;UBERON:0001049!1.99e-16!52;UBERON:0005068!1.99e-16!52;UBERON:0006241!1.99e-16!52;UBERON:0007135!1.99e-16!52;UBERON:0001017!3.79e-15!73;UBERON:0005743!3.79e-15!73;UBERON:0000033!4.18e-15!63;UBERON:0000073!4.67e-14!75;UBERON:0001016!4.67e-14!75;UBERON:0003080!1.16e-12!40;UBERON:0002020!1.84e-12!34;UBERON:0004121!2.04e-12!102;UBERON:0000924!2.04e-12!102;UBERON:0006601!2.04e-12!102;UBERON:0002791!3.34e-12!29;UBERON:0003528!3.34e-12!29;UBERON:0001893!3.34e-12!29;UBERON:0002780!4.10e-12!39;UBERON:0001890!4.10e-12!39;UBERON:0006240!4.10e-12!39;UBERON:0002346!1.74e-11!71;UBERON:0003075!1.74e-11!71;UBERON:0007284!1.74e-11!71;UBERON:0003056!6.56e-10!49;UBERON:0007811!1.25e-09!86;UBERON:0000956!1.52e-09!21;UBERON:0001869!1.52e-09!21;UBERON:0000203!1.52e-09!21;UBERON:0004111!2.90e-09!122;UBERON:0000153!2.05e-08!94;UBERON:0000025!3.51e-08!114;UBERON:0002619!4.50e-08!17;UBERON:0000483!6.89e-07!181 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.59e-17,54;UBERON:0001049,1.99e-16,52;UBERON:0005068,1.99e-16,52;UBERON:0006241,1.99e-16,52;UBERON:0007135,1.99e-16,52;UBERON:0000955,1.05e-15,47;UBERON:0006238,1.05e-15,47;UBERON:0002616,2.40e-15,46;UBERON:0001017,3.79e-15,73;UBERON:0001016,4.67e-14,75;UBERON:0003080,1.16e-12,40;UBERON:0004121,1.77e-12,95;UBERON:0000924,1.77e-12,95;UBERON:0006601,1.77e-12,95;UBERON:0002020,1.83e-12,34;UBERON:0003528,3.34e-12,29;UBERON:0002791,3.34e-12,29;UBERON:0001893,3.34e-12,29;UBERON:0002780,4.10e-12,39;UBERON:0001890,4.10e-12,39;UBERON:0006240,4.10e-12,39;UBERON:0002346,8.26e-12,64;UBERON:0003075,8.26e-12,64;UBERON:0007284,8.26e-12,64;UBERON:0010314,1.11e-11,92;UBERON:0010371,1.52e-11,73;UBERON:0003056,6.56e-10,49;UBERON:0000956,1.52e-09,21;UBERON:0001869,1.52e-09,21;UBERON:0000203,1.52e-09,21;UBERON:0004111,2.90e-09,122;UBERON:0000025,3.51e-08,114;UBERON:0002619,4.50e-08,17 | |||
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| |||
|short_description=p1@Wdtc1 | |||
}} |
Revision as of 21:33, 4 August 2015
Short description: | p1@Wdtc1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Wdtc1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1132 |
Association with transcript: | 0bp_to_ENSMUST00000043305, NM_199306, uc012dml.1_5end |
EntrezGene: | 230796 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.72e-07 | 23 |
neuroblast (sensu Vertebrata) | 2.72e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.59e-17 | 54 |
neural tube | 1.99e-16 | 52 |
neural rod | 1.99e-16 | 52 |
future spinal cord | 1.99e-16 | 52 |
neural keel | 1.99e-16 | 52 |
brain | 1.05e-15 | 47 |
future brain | 1.05e-15 | 47 |
regional part of brain | 2.40e-15 | 46 |
central nervous system | 3.79e-15 | 73 |
nervous system | 4.67e-14 | 75 |
anterior neural tube | 1.16e-12 | 40 |
ectoderm-derived structure | 1.77e-12 | 95 |
ectoderm | 1.77e-12 | 95 |
presumptive ectoderm | 1.77e-12 | 95 |
gray matter | 1.83e-12 | 34 |
brain grey matter | 3.34e-12 | 29 |
regional part of telencephalon | 3.34e-12 | 29 |
telencephalon | 3.34e-12 | 29 |
regional part of forebrain | 4.10e-12 | 39 |
forebrain | 4.10e-12 | 39 |
future forebrain | 4.10e-12 | 39 |
neurectoderm | 8.26e-12 | 64 |
neural plate | 8.26e-12 | 64 |
presumptive neural plate | 8.26e-12 | 64 |
structure with developmental contribution from neural crest | 1.11e-11 | 92 |
ecto-epithelium | 1.52e-11 | 73 |
pre-chordal neural plate | 6.56e-10 | 49 |
cerebral cortex | 1.52e-09 | 21 |
cerebral hemisphere | 1.52e-09 | 21 |
pallium | 1.52e-09 | 21 |
anatomical conduit | 2.90e-09 | 122 |
tube | 3.51e-08 | 114 |
regional part of cerebral cortex | 4.50e-08 | 17 |