FFCP PHASE1:Mm9::chr4:155560324..155560388,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=11603|HGNC=|MCL_coexpression_id=22|UniProt=|association_with_transcript=0bp_to_uc008wgg.1_5end|description=CAGE_peak_2_at_Agrn_5end|id=chr4:155560324..155560388,-|ontology_enrichment_celltype=CL:0000117!1.96e-13!23;CL:0000337!1.96e-13!23;CL:0000540!2.57e-12!33;CL:0000047!2.57e-12!33;CL:0000031!2.57e-12!33;CL:0000404!2.57e-12!33;CL:0000221!2.94e-11!44;CL:0000133!2.94e-11!44;CL:0002319!3.66e-11!43;CL:0000393!1.13e-08!39;CL:0000211!1.13e-08!39;CL:0000055!9.61e-08!50|ontology_enrichment_celltype_v019_2=CL:0000117,3.51e-15,23;CL:0000337,3.51e-15,23;CL:0000540,6.08e-13,33;CL:0000047,6.08e-13,33;CL:0000031,6.08e-13,33;CL:0000404,6.08e-13,33;CL:0000221,1.11e-11,44;CL:0000133,1.11e-11,44;CL:0002319,1.45e-11,43;CL:0000393,4.59e-09,39;CL:0000211,4.59e-09,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!1.72e-27!71;UBERON:0003075!1.72e-27!71;UBERON:0007284!1.72e-27!71;UBERON:0001017!2.53e-25!73;UBERON:0005743!2.53e-25!73;UBERON:0004121!3.09e-25!102;UBERON:0000924!3.09e-25!102;UBERON:0006601!3.09e-25!102;UBERON:0000073!2.29e-24!75;UBERON:0001016!2.29e-24!75;UBERON:0003056!2.20e-23!49;UBERON:0000033!1.63e-22!63;UBERON:0001049!2.30e-21!52;UBERON:0005068!2.30e-21!52;UBERON:0006241!2.30e-21!52;UBERON:0007135!2.30e-21!52;UBERON:0000955!1.88e-19!50;UBERON:0006238!1.88e-19!50;UBERON:0002616!7.06e-19!49;UBERON:0003080!1.08e-18!40;UBERON:0002780!3.19e-18!39;UBERON:0001890!3.19e-18!39;UBERON:0006240!3.19e-18!39;UBERON:0002020!5.11e-18!34;UBERON:0002791!6.48e-15!29;UBERON:0003528!6.48e-15!29;UBERON:0001893!6.48e-15!29;UBERON:0000956!4.07e-11!21;UBERON:0001869!4.07e-11!21;UBERON:0000203!4.07e-11!21;UBERON:0007811!3.26e-09!86;UBERON:0002619!6.03e-09!17;UBERON:0000153!6.37e-09!94;UBERON:0000468!4.86e-08!333;UBERON:0000025!9.83e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.81e-29,64;UBERON:0003075,1.81e-29,64;UBERON:0007284,1.81e-29,64;UBERON:0001017,5.01e-28,73;UBERON:0001016,1.73e-26,75;UBERON:0003056,4.50e-26,49;UBERON:0000073,2.46e-25,54;UBERON:0004121,4.04e-25,95;UBERON:0000924,4.04e-25,95;UBERON:0006601,4.04e-25,95;UBERON:0001049,1.62e-24,52;UBERON:0005068,1.62e-24,52;UBERON:0006241,1.62e-24,52;UBERON:0007135,1.62e-24,52;UBERON:0010371,4.14e-24,73;UBERON:0010314,1.90e-21,92;UBERON:0000955,2.35e-21,47;UBERON:0006238,2.35e-21,47;UBERON:0003080,3.21e-21,40;UBERON:0002616,1.07e-20,46;UBERON:0002780,1.12e-20,39;UBERON:0001890,1.12e-20,39;UBERON:0006240,1.12e-20,39;UBERON:0002020,1.92e-20,34;UBERON:0003528,7.01e-17,29;UBERON:0002791,7.01e-17,29;UBERON:0001893,7.01e-17,29;UBERON:0000956,1.60e-12,21;UBERON:0001869,1.60e-12,21;UBERON:0000203,1.60e-12,21;UBERON:0002619,4.92e-10,17;UBERON:0002021,9.64e-07,10;UBERON:0000411,9.64e-07,10;UBERON:0001950,9.64e-07,10|phase1_expression=2.40223270657191,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27564935226605,0,0,0,0,0,0,0,0,0,0,1.27006134691926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.8343270329458,1.97717564461025,1.36100929351998,1.67983705950435,2.87505128729943,0,0,0,0.257259436035947,0.286533439938757,0,29.5382032855013,30.6814767977779,27.8885817542719,0,0,0,0,0,1.49800055259202,5.76327457982332,15.5534418462716,19.3058491814318,16.4053469854078,11.9973413449598,12.8103753751936,23.0282702524114,22.2361492762308,35.8495326777908,8.8092704799511,3.44755812830007,3.07213066512487,40.7528629086299,28.0867065859398,30.2129754922921,3.35019598801657,3.37657566019008,10.5430790965999,25.0434297652618,16.3727432918968,25.9095229697168,0.075726193333184,0.0755715601067855,0,0,0,0,0,0,0.140444420131752,0,0,0,2.25349471642689,0,0,0,0,0,0,0.11418387971906,0,1.1875371125186,5.03107447621794,6.39377504455497,3.68984795609694,5.72746034099966,5.40908052824242,1.0053327306374,0,0.144599356919912,0,0.161766849947409,0,0,0,1.46390398505774,1.25668024088073,0,0,0,0,8.38827580667007,5.49000723382352,36.3141077606178,8.51739168942155,13.0414883238469,3.94797284663164,6.97637431191358,3.66621709861139,0.373220911830279,0,0.420883711772948,11.7108398666433,20.0014830857121,20.5270827978098,20.4958552256572,30.1401691240382,26.9038812598185,26.4238863258435,6.20888089773638,1.29340795759705,2.08016688184601,1.23165786914764,1.09597866213787,0.278047249225598,0.696504333044333,1.02891068203972,2.58744546864041,0,0,0,4.14251545071004,1.17263029990548,2.52086886045421,0.473489471170421,1.57411385397923,0.617068451549513,0.232533944750408,0.268273401399619,0.467061369468678,0.329119699826961,0.656669856316381,0.0810688095458557,0.146199987425332,0,0.536825675041487,9.46304768538573,50.8348785153665,0,0.264450566663544,3.19932375802851,1.85789337488351,2.44848176511977,2.21851877085677,2.00140239460383,0.951128130562796,0,0.988193728344065,0.251335208800269,0.397912944082302,0.58489226135736,0,0,0,1.70701110857774,3.88444942873078,5.63538678365402,2.24016460629846,2.13347735884388,2.38461787627083,0.822074982615345,0,0.470996183524124,0.246794327843601,0,0.500535317148282,0.589676985339609,0,0.202860121388503,0.241177159752417,0,0.287696137450811,0,0,0,0.372140947668503,0,0,0,0,0,2.08440552947533,1.30371981153621,1.69745085775188,0.938760993154008,1.67506257441816,0.714130922658041,0.195133647857799,2.67979744980525,3.32197034473162,3.02964060449226,0.491589944147214,0.518054945597687,0.433947175744535,0,0,0,0,4.65596710964597,4.68846746368813,0,0,1.26203287766503,1.17131623288992,2.58508077279359,1.43381278771531,1.78238939265915,0.566153061577665,0.404810701674894,2.63030272120181,2.76701444562566,11.8888887076069,0.425820255624806,4.45164009168138,2.93196526836437,1.64970122972535,0,0.971122544619926,0.906970670894253,0.188605079755898,0.295301892880773,0.307435147943927,0,0.727067458955011,0.356497378384721,0,0,1.03135543248187,3.40439605753788,9.54323798365944,8.66703181344455,7.93047029616891,6.38424841112185,4.10248280484762,4.93647061806363,7.61162372786498,0,0,0,0.16488625294148,0,0.422190474497091,0.119372344003136,0.164140899745061,0,3.15223013417866,0,0,0,0,0,0,0,0,0,0,3.16335993581135,1.82987520414164,1.08005340821801,1.25452977608681,0.87345025498471,0.539457385539283,0.826534557253359,0,0.388844919875379,0,0,0.897099276263873,1.32366792365678,1.55560950675238,1.6790777052105,1.35164900392623,1.76035857968631,0.781226309063701,0,0,0,0,0,0.308132871494482,0,0,0,0,0.147689527174577,0,0,0,0,0.0962118416403295,0,0,0,0,0,0.19318959403219,0,0.549454872801795,0.214368379079066,0,16.942555278512,18.4130094602871,21.1971339972577,14.4356673168698,8.90607275701835,11.3309084608455,10.8003600037089,4.5032120322422,6.34399372577886,7.7664046762773,3.73634451303036,20.7492934168536,14.1708892775931,6.80698807791223,3.77303692730368,4.59608771125035,6.88964856185007,7.2112270033613,9.94849549734627,8.33900798820532,8.61829619626815,6.22466926574051,5.99305647807247,7.23484222175023,7.58148190214095,5.71552429539688,7.18482820858104,7.13764115715709,4.12085900803307,6.03515572551029,8.57173130963539,6.03417740941747,5.7224685587357,7.70336008151341,6.68176600948847,7.53070010235921,8.04883080640199,6.57674278594607,6.51859746460137,9.53941861818155,6.16902094245706,6.2057823896605,4.09231043169689,5.88759996506671,6.94463799532109,25.4806789496705,8.4215379040347,10.09893954027,1.72159498861959,0.441182838239031,0.695603506861264|short_description=p2@Agrn}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:11603 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=0bp_to_uc008wgg.1_5end | |||
|cluster_id=chr4:155560324..155560388,- | |||
|description=CAGE_peak_2_at_Agrn_5end | |||
|id=chr4:155560324..155560388,- | |||
|ontology_enrichment_celltype=CL:0000117!1.96e-13!23;CL:0000337!1.96e-13!23;CL:0000540!2.57e-12!33;CL:0000047!2.57e-12!33;CL:0000031!2.57e-12!33;CL:0000404!2.57e-12!33;CL:0000221!2.94e-11!44;CL:0000133!2.94e-11!44;CL:0002319!3.66e-11!43;CL:0000393!1.13e-08!39;CL:0000211!1.13e-08!39;CL:0000055!9.61e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.51e-15,23;CL:0000337,3.51e-15,23;CL:0000540,6.08e-13,33;CL:0000047,6.08e-13,33;CL:0000031,6.08e-13,33;CL:0000404,6.08e-13,33;CL:0000221,1.11e-11,44;CL:0000133,1.11e-11,44;CL:0002319,1.45e-11,43;CL:0000393,4.59e-09,39;CL:0000211,4.59e-09,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!1.72e-27!71;UBERON:0003075!1.72e-27!71;UBERON:0007284!1.72e-27!71;UBERON:0001017!2.53e-25!73;UBERON:0005743!2.53e-25!73;UBERON:0004121!3.09e-25!102;UBERON:0000924!3.09e-25!102;UBERON:0006601!3.09e-25!102;UBERON:0000073!2.29e-24!75;UBERON:0001016!2.29e-24!75;UBERON:0003056!2.20e-23!49;UBERON:0000033!1.63e-22!63;UBERON:0001049!2.30e-21!52;UBERON:0005068!2.30e-21!52;UBERON:0006241!2.30e-21!52;UBERON:0007135!2.30e-21!52;UBERON:0000955!1.88e-19!50;UBERON:0006238!1.88e-19!50;UBERON:0002616!7.06e-19!49;UBERON:0003080!1.08e-18!40;UBERON:0002780!3.19e-18!39;UBERON:0001890!3.19e-18!39;UBERON:0006240!3.19e-18!39;UBERON:0002020!5.11e-18!34;UBERON:0002791!6.48e-15!29;UBERON:0003528!6.48e-15!29;UBERON:0001893!6.48e-15!29;UBERON:0000956!4.07e-11!21;UBERON:0001869!4.07e-11!21;UBERON:0000203!4.07e-11!21;UBERON:0007811!3.26e-09!86;UBERON:0002619!6.03e-09!17;UBERON:0000153!6.37e-09!94;UBERON:0000468!4.86e-08!333;UBERON:0000025!9.83e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.81e-29,64;UBERON:0003075,1.81e-29,64;UBERON:0007284,1.81e-29,64;UBERON:0001017,5.01e-28,73;UBERON:0001016,1.73e-26,75;UBERON:0003056,4.50e-26,49;UBERON:0000073,2.46e-25,54;UBERON:0004121,4.04e-25,95;UBERON:0000924,4.04e-25,95;UBERON:0006601,4.04e-25,95;UBERON:0001049,1.62e-24,52;UBERON:0005068,1.62e-24,52;UBERON:0006241,1.62e-24,52;UBERON:0007135,1.62e-24,52;UBERON:0010371,4.14e-24,73;UBERON:0010314,1.90e-21,92;UBERON:0000955,2.35e-21,47;UBERON:0006238,2.35e-21,47;UBERON:0003080,3.21e-21,40;UBERON:0002616,1.07e-20,46;UBERON:0002780,1.12e-20,39;UBERON:0001890,1.12e-20,39;UBERON:0006240,1.12e-20,39;UBERON:0002020,1.92e-20,34;UBERON:0003528,7.01e-17,29;UBERON:0002791,7.01e-17,29;UBERON:0001893,7.01e-17,29;UBERON:0000956,1.60e-12,21;UBERON:0001869,1.60e-12,21;UBERON:0000203,1.60e-12,21;UBERON:0002619,4.92e-10,17;UBERON:0002021,9.64e-07,10;UBERON:0000411,9.64e-07,10;UBERON:0001950,9.64e-07,10 | |||
|phase1_expression=2.40223270657191,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27564935226605,0,0,0,0,0,0,0,0,0,0,1.27006134691926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.8343270329458,1.97717564461025,1.36100929351998,1.67983705950435,2.87505128729943,0,0,0,0.257259436035947,0.286533439938757,0,29.5382032855013,30.6814767977779,27.8885817542719,0,0,0,0,0,1.49800055259202,5.76327457982332,15.5534418462716,19.3058491814318,16.4053469854078,11.9973413449598,12.8103753751936,23.0282702524114,22.2361492762308,35.8495326777908,8.8092704799511,3.44755812830007,3.07213066512487,40.7528629086299,28.0867065859398,30.2129754922921,3.35019598801657,3.37657566019008,10.5430790965999,25.0434297652618,16.3727432918968,25.9095229697168,0.075726193333184,0.0755715601067855,0,0,0,0,0,0,0.140444420131752,0,0,0,2.25349471642689,0,0,0,0,0,0,0.11418387971906,0,1.1875371125186,5.03107447621794,6.39377504455497,3.68984795609694,5.72746034099966,5.40908052824242,1.0053327306374,0,0.144599356919912,0,0.161766849947409,0,0,0,1.46390398505774,1.25668024088073,0,0,0,0,8.38827580667007,5.49000723382352,36.3141077606178,8.51739168942155,13.0414883238469,3.94797284663164,6.97637431191358,3.66621709861139,0.373220911830279,0,0.420883711772948,11.7108398666433,20.0014830857121,20.5270827978098,20.4958552256572,30.1401691240382,26.9038812598185,26.4238863258435,6.20888089773638,1.29340795759705,2.08016688184601,1.23165786914764,1.09597866213787,0.278047249225598,0.696504333044333,1.02891068203972,2.58744546864041,0,0,0,4.14251545071004,1.17263029990548,2.52086886045421,0.473489471170421,1.57411385397923,0.617068451549513,0.232533944750408,0.268273401399619,0.467061369468678,0.329119699826961,0.656669856316381,0.0810688095458557,0.146199987425332,0,0.536825675041487,9.46304768538573,50.8348785153665,0,0.264450566663544,3.19932375802851,1.85789337488351,2.44848176511977,2.21851877085677,2.00140239460383,0.951128130562796,0,0.988193728344065,0.251335208800269,0.397912944082302,0.58489226135736,0,0,0,1.70701110857774,3.88444942873078,5.63538678365402,2.24016460629846,2.13347735884388,2.38461787627083,0.822074982615345,0,0.470996183524124,0.246794327843601,0,0.500535317148282,0.589676985339609,0,0.202860121388503,0.241177159752417,0,0.287696137450811,0,0,0,0.372140947668503,0,0,0,0,0,2.08440552947533,1.30371981153621,1.69745085775188,0.938760993154008,1.67506257441816,0.714130922658041,0.195133647857799,2.67979744980525,3.32197034473162,3.02964060449226,0.491589944147214,0.518054945597687,0.433947175744535,0,0,0,0,4.65596710964597,4.68846746368813,0,0,1.26203287766503,1.17131623288992,2.58508077279359,1.43381278771531,1.78238939265915,0.566153061577665,0.404810701674894,2.63030272120181,2.76701444562566,11.8888887076069,0.425820255624806,4.45164009168138,2.93196526836437,1.64970122972535,0,0.971122544619926,0.906970670894253,0.188605079755898,0.295301892880773,0.307435147943927,0,0.727067458955011,0.356497378384721,0,0,1.03135543248187,3.40439605753788,9.54323798365944,8.66703181344455,7.93047029616891,6.38424841112185,4.10248280484762,4.93647061806363,7.61162372786498,0,0,0,0.16488625294148,0,0.422190474497091,0.119372344003136,0.164140899745061,0,3.15223013417866,0,0,0,0,0,0,0,0,0,0,3.16335993581135,1.82987520414164,1.08005340821801,1.25452977608681,0.87345025498471,0.539457385539283,0.826534557253359,0,0.388844919875379,0,0,0.897099276263873,1.32366792365678,1.55560950675238,1.6790777052105,1.35164900392623,1.76035857968631,0.781226309063701,0,0,0,0,0,0.308132871494482,0,0,0,0,0.147689527174577,0,0,0,0,0.0962118416403295,0,0,0,0,0,0.19318959403219,0,0.549454872801795,0.214368379079066,0,16.942555278512,18.4130094602871,21.1971339972577,14.4356673168698,8.90607275701835,11.3309084608455,10.8003600037089,4.5032120322422,6.34399372577886,7.7664046762773,3.73634451303036,20.7492934168536,14.1708892775931,6.80698807791223,3.77303692730368,4.59608771125035,6.88964856185007,7.2112270033613,9.94849549734627,8.33900798820532,8.61829619626815,6.22466926574051,5.99305647807247,7.23484222175023,7.58148190214095,5.71552429539688,7.18482820858104,7.13764115715709,4.12085900803307,6.03515572551029,8.57173130963539,6.03417740941747,5.7224685587357,7.70336008151341,6.68176600948847,7.53070010235921,8.04883080640199,6.57674278594607,6.51859746460137,9.53941861818155,6.16902094245706,6.2057823896605,4.09231043169689,5.88759996506671,6.94463799532109,25.4806789496705,8.4215379040347,10.09893954027,1.72159498861959,0.441182838239031,0.695603506861264 | |||
|short_description=p2@Agrn | |||
}} |
Revision as of 07:57, 5 August 2015
Short description: | p2@Agrn |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Agrn_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_uc008wgg.1_5end |
EntrezGene: | 11603 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.51e-15 | 23 |
neuroblast (sensu Vertebrata) | 3.51e-15 | 23 |
neuron | 6.08e-13 | 33 |
neuronal stem cell | 6.08e-13 | 33 |
neuroblast | 6.08e-13 | 33 |
electrically signaling cell | 6.08e-13 | 33 |
ectodermal cell | 1.11e-11 | 44 |
neurectodermal cell | 1.11e-11 | 44 |
neural cell | 1.45e-11 | 43 |
electrically responsive cell | 4.59e-09 | 39 |
electrically active cell | 4.59e-09 | 39 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 1.81e-29 | 64 |
neural plate | 1.81e-29 | 64 |
presumptive neural plate | 1.81e-29 | 64 |
central nervous system | 5.01e-28 | 73 |
nervous system | 1.73e-26 | 75 |
pre-chordal neural plate | 4.50e-26 | 49 |
regional part of nervous system | 2.46e-25 | 54 |
ectoderm-derived structure | 4.04e-25 | 95 |
ectoderm | 4.04e-25 | 95 |
presumptive ectoderm | 4.04e-25 | 95 |
neural tube | 1.62e-24 | 52 |
neural rod | 1.62e-24 | 52 |
future spinal cord | 1.62e-24 | 52 |
neural keel | 1.62e-24 | 52 |
ecto-epithelium | 4.14e-24 | 73 |
structure with developmental contribution from neural crest | 1.90e-21 | 92 |
brain | 2.35e-21 | 47 |
future brain | 2.35e-21 | 47 |
anterior neural tube | 3.21e-21 | 40 |
regional part of brain | 1.07e-20 | 46 |
regional part of forebrain | 1.12e-20 | 39 |
forebrain | 1.12e-20 | 39 |
future forebrain | 1.12e-20 | 39 |
gray matter | 1.92e-20 | 34 |
brain grey matter | 7.01e-17 | 29 |
regional part of telencephalon | 7.01e-17 | 29 |
telencephalon | 7.01e-17 | 29 |
cerebral cortex | 1.60e-12 | 21 |
cerebral hemisphere | 1.60e-12 | 21 |
pallium | 1.60e-12 | 21 |
regional part of cerebral cortex | 4.92e-10 | 17 |
occipital lobe | 9.64e-07 | 10 |
visual cortex | 9.64e-07 | 10 |
neocortex | 9.64e-07 | 10 |