FFCP PHASE1:Mm9::chr18:77804091..77804141,-: Difference between revisions
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{{FFCP|EntrezGene=225743|HGNC=|MCL_coexpression_id=13|UniProt=E9QAU8|association_with_transcript=-216bp_to_ENSMUST00000026494,NM_001164504,uc008frj.2,uc008frm.2_5end|description=CAGE_peak_1_at_Rnf165_5end|id=chr18:77804091..77804141,-|ontology_enrichment_celltype=CL:0000540!3.54e-17!33;CL:0000047!3.54e-17!33;CL:0000031!3.54e-17!33;CL:0000404!3.54e-17!33;CL:0000117!1.95e-13!23;CL:0000337!1.95e-13!23;CL:0000221!1.30e-12!44;CL:0000133!1.30e-12!44;CL:0002319!1.61e-12!43;CL:0000393!3.46e-12!39;CL:0000211!3.46e-12!39;CL:0000055!1.53e-08!50|ontology_enrichment_celltype_v019_2=CL:0000540,1.51e-19,33;CL:0000047,1.51e-19,33;CL:0000031,1.51e-19,33;CL:0000404,1.51e-19,33;CL:0000117,8.03e-16,23;CL:0000337,8.03e-16,23;CL:0000393,3.65e-14,39;CL:0000211,3.65e-14,39;CL:0000221,1.53e-13,44;CL:0000133,1.53e-13,44;CL:0002319,2.02e-13,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!3.30e-28!102;UBERON:0000924!3.30e-28!102;UBERON:0006601!3.30e-28!102;UBERON:0001017!5.01e-28!73;UBERON:0005743!5.01e-28!73;UBERON:0000073!1.38e-26!75;UBERON:0001016!1.38e-26!75;UBERON:0002346!2.63e-26!71;UBERON:0003075!2.63e-26!71;UBERON:0007284!2.63e-26!71;UBERON:0000033!1.34e-22!63;UBERON:0003056!4.46e-21!49;UBERON:0001049!5.54e-21!52;UBERON:0005068!5.54e-21!52;UBERON:0006241!5.54e-21!52;UBERON:0007135!5.54e-21!52;UBERON:0000955!1.60e-19!50;UBERON:0006238!1.60e-19!50;UBERON:0002616!5.72e-19!49;UBERON:0002020!8.96e-19!34;UBERON:0003080!1.37e-17!40;UBERON:0002780!3.47e-17!39;UBERON:0001890!3.47e-17!39;UBERON:0006240!3.47e-17!39;UBERON:0002791!5.64e-16!29;UBERON:0003528!5.64e-16!29;UBERON:0001893!5.64e-16!29;UBERON:0000956!2.59e-12!21;UBERON:0001869!2.59e-12!21;UBERON:0000203!2.59e-12!21;UBERON:0000468!1.34e-10!333;UBERON:0002619!7.90e-10!17;UBERON:0000153!4.47e-09!94;UBERON:0007811!5.87e-09!86;UBERON:0000922!3.90e-08!328;UBERON:0002021!2.30e-07!10;UBERON:0000411!2.30e-07!10;UBERON:0001950!2.30e-07!10;UBERON:0000025!6.37e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.89e-32,73;UBERON:0002346,5.47e-31,64;UBERON:0003075,5.47e-31,64;UBERON:0007284,5.47e-31,64;UBERON:0001016,4.65e-30,75;UBERON:0004121,1.09e-29,95;UBERON:0000924,1.09e-29,95;UBERON:0006601,1.09e-29,95;UBERON:0000073,8.58e-26,54;UBERON:0010371,1.50e-25,73;UBERON:0001049,1.02e-24,52;UBERON:0005068,1.02e-24,52;UBERON:0006241,1.02e-24,52;UBERON:0007135,1.02e-24,52;UBERON:0003056,2.05e-24,49;UBERON:0010314,2.61e-22,92;UBERON:0002020,1.39e-21,34;UBERON:0000955,1.69e-21,47;UBERON:0006238,1.69e-21,47;UBERON:0002616,7.62e-21,46;UBERON:0003080,3.17e-20,40;UBERON:0002780,9.64e-20,39;UBERON:0001890,9.64e-20,39;UBERON:0006240,9.64e-20,39;UBERON:0003528,3.13e-18,29;UBERON:0002791,3.13e-18,29;UBERON:0001893,3.13e-18,29;UBERON:0000956,7.89e-14,21;UBERON:0001869,7.89e-14,21;UBERON:0000203,7.89e-14,21;UBERON:0002619,7.23e-11,17;UBERON:0002021,1.56e-08,10;UBERON:0000411,1.56e-08,10;UBERON:0001950,1.56e-08,10|phase1_expression=0.960893082628764,0,0,0.90739263392049,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.36069264241712,0.198581902401771,0.522399578277871,0,0.22940928106717,0,0,0,0.380046838912748,0.252030129759931,0.221730510655305,0,0,0,0,0.332469290716985,0.204169356262369,0,0,0,0,0,0,0,0.101376931219515,0,0,1.09012578190223,1.31811709640683,0.777719596297134,0.139986421625363,1.43752564364972,0,0,0,0.514518872071894,0,0.515672092277442,17.8038485556446,20.6306481916093,16.4796164911607,0,0,0,0,0,0.299600110518405,0.768436610643109,13.9980976616445,18.0907957364465,12.6194976810829,5.71301968807607,5.96345060569357,16.046294697159,14.4726661237537,19.3035945188104,4.40463523997555,4.72443150915195,4.30098293117482,19.7829431595291,13.9061218275663,17.7110545989298,3.35019598801657,2.25105044012672,4.12555268997387,10.9012576625257,5.41012387036591,15.6575534493252,0.075726193333184,0.226714680320357,5.2175607966302,0,0,0,0,0,0.421333260395256,0,0,0,1.69012103732017,0,0,0,0,0,0,0.22836775943812,0.517875767294343,1.63286352971307,2.77576522825817,1.82679286987285,0.691846491768175,1.20578112442098,1.52865319276416,1.25666591329675,0,0.144599356919912,0,1.61766849947409,0.662524555381181,0.484875253135222,0,2.34224637609238,4.39838084308256,0.766371165625774,0,0,0,4.6435098215495,4.11750542536764,16.8376831831238,12.5153510538439,8.43861009190091,5.194701113989,6.97637431191358,0.916554274652847,0.373220911830279,0,1.26265113531884,3.513251959993,2.98872735763515,3.24111833649629,5.87748789559289,7.00775941258677,7.43059577652129,8.80796210861451,4.65666067330228,1.94011193639558,1.70195472151037,1.58356011747554,0.43839146485515,0.556094498451196,1.0447564995665,1.23469281844766,1.39323986772945,0,0,0,1.44988040774851,1.17263029990548,0.540186184383045,1.89395788468168,0.590292695242212,1.07986979021165,0.232533944750408,0.268273401399619,1.16765342367169,1.48103864922132,1.64167464079095,0.56748166682099,0.292399974850665,0.658650345873152,0.268412837520744,10.3042074796422,14.7153595702377,0,0,1.2797295032114,2.32236671860439,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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:225743 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:E9QAU8 | |||
|association_with_transcript=-216bp_to_ENSMUST00000026494,NM_001164504,uc008frj.2,uc008frm.2_5end | |||
|cluster_id=chr18:77804091..77804141,- | |||
|description=CAGE_peak_1_at_Rnf165_5end | |||
|id=chr18:77804091..77804141,- | |||
|ontology_enrichment_celltype=CL:0000540!3.54e-17!33;CL:0000047!3.54e-17!33;CL:0000031!3.54e-17!33;CL:0000404!3.54e-17!33;CL:0000117!1.95e-13!23;CL:0000337!1.95e-13!23;CL:0000221!1.30e-12!44;CL:0000133!1.30e-12!44;CL:0002319!1.61e-12!43;CL:0000393!3.46e-12!39;CL:0000211!3.46e-12!39;CL:0000055!1.53e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.51e-19,33;CL:0000047,1.51e-19,33;CL:0000031,1.51e-19,33;CL:0000404,1.51e-19,33;CL:0000117,8.03e-16,23;CL:0000337,8.03e-16,23;CL:0000393,3.65e-14,39;CL:0000211,3.65e-14,39;CL:0000221,1.53e-13,44;CL:0000133,1.53e-13,44;CL:0002319,2.02e-13,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!3.30e-28!102;UBERON:0000924!3.30e-28!102;UBERON:0006601!3.30e-28!102;UBERON:0001017!5.01e-28!73;UBERON:0005743!5.01e-28!73;UBERON:0000073!1.38e-26!75;UBERON:0001016!1.38e-26!75;UBERON:0002346!2.63e-26!71;UBERON:0003075!2.63e-26!71;UBERON:0007284!2.63e-26!71;UBERON:0000033!1.34e-22!63;UBERON:0003056!4.46e-21!49;UBERON:0001049!5.54e-21!52;UBERON:0005068!5.54e-21!52;UBERON:0006241!5.54e-21!52;UBERON:0007135!5.54e-21!52;UBERON:0000955!1.60e-19!50;UBERON:0006238!1.60e-19!50;UBERON:0002616!5.72e-19!49;UBERON:0002020!8.96e-19!34;UBERON:0003080!1.37e-17!40;UBERON:0002780!3.47e-17!39;UBERON:0001890!3.47e-17!39;UBERON:0006240!3.47e-17!39;UBERON:0002791!5.64e-16!29;UBERON:0003528!5.64e-16!29;UBERON:0001893!5.64e-16!29;UBERON:0000956!2.59e-12!21;UBERON:0001869!2.59e-12!21;UBERON:0000203!2.59e-12!21;UBERON:0000468!1.34e-10!333;UBERON:0002619!7.90e-10!17;UBERON:0000153!4.47e-09!94;UBERON:0007811!5.87e-09!86;UBERON:0000922!3.90e-08!328;UBERON:0002021!2.30e-07!10;UBERON:0000411!2.30e-07!10;UBERON:0001950!2.30e-07!10;UBERON:0000025!6.37e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.89e-32,73;UBERON:0002346,5.47e-31,64;UBERON:0003075,5.47e-31,64;UBERON:0007284,5.47e-31,64;UBERON:0001016,4.65e-30,75;UBERON:0004121,1.09e-29,95;UBERON:0000924,1.09e-29,95;UBERON:0006601,1.09e-29,95;UBERON:0000073,8.58e-26,54;UBERON:0010371,1.50e-25,73;UBERON:0001049,1.02e-24,52;UBERON:0005068,1.02e-24,52;UBERON:0006241,1.02e-24,52;UBERON:0007135,1.02e-24,52;UBERON:0003056,2.05e-24,49;UBERON:0010314,2.61e-22,92;UBERON:0002020,1.39e-21,34;UBERON:0000955,1.69e-21,47;UBERON:0006238,1.69e-21,47;UBERON:0002616,7.62e-21,46;UBERON:0003080,3.17e-20,40;UBERON:0002780,9.64e-20,39;UBERON:0001890,9.64e-20,39;UBERON:0006240,9.64e-20,39;UBERON:0003528,3.13e-18,29;UBERON:0002791,3.13e-18,29;UBERON:0001893,3.13e-18,29;UBERON:0000956,7.89e-14,21;UBERON:0001869,7.89e-14,21;UBERON:0000203,7.89e-14,21;UBERON:0002619,7.23e-11,17;UBERON:0002021,1.56e-08,10;UBERON:0000411,1.56e-08,10;UBERON:0001950,1.56e-08,10 | |||
|phase1_expression=0.960893082628764,0,0,0.90739263392049,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.36069264241712,0.198581902401771,0.522399578277871,0,0.22940928106717,0,0,0,0.380046838912748,0.252030129759931,0.221730510655305,0,0,0,0,0.332469290716985,0.204169356262369,0,0,0,0,0,0,0,0.101376931219515,0,0,1.09012578190223,1.31811709640683,0.777719596297134,0.139986421625363,1.43752564364972,0,0,0,0.514518872071894,0,0.515672092277442,17.8038485556446,20.6306481916093,16.4796164911607,0,0,0,0,0,0.299600110518405,0.768436610643109,13.9980976616445,18.0907957364465,12.6194976810829,5.71301968807607,5.96345060569357,16.046294697159,14.4726661237537,19.3035945188104,4.40463523997555,4.72443150915195,4.30098293117482,19.7829431595291,13.9061218275663,17.7110545989298,3.35019598801657,2.25105044012672,4.12555268997387,10.9012576625257,5.41012387036591,15.6575534493252,0.075726193333184,0.226714680320357,5.2175607966302,0,0,0,0,0,0.421333260395256,0,0,0,1.69012103732017,0,0,0,0,0,0,0.22836775943812,0.517875767294343,1.63286352971307,2.77576522825817,1.82679286987285,0.691846491768175,1.20578112442098,1.52865319276416,1.25666591329675,0,0.144599356919912,0,1.61766849947409,0.662524555381181,0.484875253135222,0,2.34224637609238,4.39838084308256,0.766371165625774,0,0,0,4.6435098215495,4.11750542536764,16.8376831831238,12.5153510538439,8.43861009190091,5.194701113989,6.97637431191358,0.916554274652847,0.373220911830279,0,1.26265113531884,3.513251959993,2.98872735763515,3.24111833649629,5.87748789559289,7.00775941258677,7.43059577652129,8.80796210861451,4.65666067330228,1.94011193639558,1.70195472151037,1.58356011747554,0.43839146485515,0.556094498451196,1.0447564995665,1.23469281844766,1.39323986772945,0,0,0,1.44988040774851,1.17263029990548,0.540186184383045,1.89395788468168,0.590292695242212,1.07986979021165,0.232533944750408,0.268273401399619,1.16765342367169,1.48103864922132,1.64167464079095,0.56748166682099,0.292399974850665,0.658650345873152,0.268412837520744,10.3042074796422,14.7153595702377,0,0,1.2797295032114,2.32236671860439,0.902072229254653,0.201683524623343,0.667134131534611,0.951128130562796,0,0.823494773620054,0.754005626400808,0.198956472041151,0.779856348476481,0,0.648414149624083,0,1.70701110857774,1.5994791765362,1.1270773567308,1.22190796707189,0.969762435838129,1.8936671370386,2.15004226222475,0.590440591918409,0.627994911365499,0.493588655687202,0.296452627087149,0.333690211432188,0.196558995113203,0,0.608580364165509,0.241177159752417,0.50925170356284,0.287696137450811,0.324270453550071,0.274561413188081,2.87536413054709,1.86070473834252,0.312037673114561,0,0.358794827043824,0,0.184753190166605,1.32643988239339,2.11854469374634,1.35796068620151,0.234690248288502,0.502518772325447,0.714130922658041,0.780534591431195,1.89162172927429,1.55025282754142,2.23236676120482,0.163863314715738,0.172684981865896,0.289298117163023,0,0,0.491764273019036,0.551873492609465,4.65596710964597,4.80567915028033,0,0.757412781613119,5.36363973007636,4.68526493155966,4.73931475012158,5.25731355495614,4.90157082981267,5.94460714656548,4.45291771842384,5.84511715822624,5.92931666919785,6.10510501201433,0.283880170416537,0.712262414669021,0.325773918707152,0.824850614862677,1.32745138339963,1.45668381692989,0.604647113929502,0,0.590603785761546,1.84461088766356,1.03371317267288,1.09060118843252,0.712994756769443,0,1.05418608574999,1.03135543248187,3.40439605753788,2.88097750450096,1.4229455216103,2.35770738534752,1.06404140185364,1.42695054081656,1.31639216481697,1.8267896946876,0.704015124191131,0,0.882113592219848,2.14352128823924,0.161464426695906,0.72375509913787,0.716234064018819,0.492422699235184,0.291480836629851,3.8939313422207,0.170870880797853,0.82554747185289,0.370389054739423,0.188368457004691,0.27338845544205,0.228778173206523,0,0,0,0,0.949007980743406,0.203319467126849,0.86404272657441,0.418176592028937,0.436725127492355,0.809186078308924,0.909188012978695,0,0.259229946583586,1.86401793926078,0,0.598066184175915,1.48912641411388,0.972255941720238,1.29159823477731,1.01373675294467,1.40828686374905,0.781226309063701,0.838874755405687,0.241584120826006,0,0,0.810900861160657,0.410843828659309,0.129920822977795,0.358053391334963,0.198681354781265,0.120195449519969,0,0.302899349844443,0.0762068066549998,0,0,0,0,0.226730383615211,0,0,0.167884616364078,1.54551675225752,0.187682475451182,0,0.428736758158132,0,16.3778034358949,18.8733346967943,21.1971339972577,14.4356673168698,6.85082519770642,13.5970901530146,8.10027000278167,7.20513925158753,8.15656336171568,9.31968561153276,3.73634451303036,3.59122386060928,4.95127456686989,4.86213434136588,3.77303692730368,4.59608771125035,3.11145418922261,4.32673620201678,2.88827288632634,5.05394423527595,4.30914809813408,4.90428487603798,2.1537546718073,3.07320731543373,3.9056118889817,6.66811167796303,4.05595140806994,3.6652751888104,2.88460130562315,2.50238164228475,2.05721551431249,1.24233064311536,2.38436189947321,3.34296758254356,3.10560955370591,2.62305284464197,2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| |||
|short_description=p1@Rnf165 | |||
}} |
Revision as of 03:48, 6 August 2015
Short description: | p1@Rnf165 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rnf165_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | -216bp_to_ENSMUST00000026494, NM_001164504, uc008frj.2, uc008frm.2_5end |
EntrezGene: | 225743 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.51e-19 | 33 |
neuronal stem cell | 1.51e-19 | 33 |
neuroblast | 1.51e-19 | 33 |
electrically signaling cell | 1.51e-19 | 33 |
CNS neuron (sensu Vertebrata) | 8.03e-16 | 23 |
neuroblast (sensu Vertebrata) | 8.03e-16 | 23 |
electrically responsive cell | 3.65e-14 | 39 |
electrically active cell | 3.65e-14 | 39 |
ectodermal cell | 1.53e-13 | 44 |
neurectodermal cell | 1.53e-13 | 44 |
neural cell | 2.02e-13 | 43 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 9.89e-32 | 73 |
neurectoderm | 5.47e-31 | 64 |
neural plate | 5.47e-31 | 64 |
presumptive neural plate | 5.47e-31 | 64 |
nervous system | 4.65e-30 | 75 |
ectoderm-derived structure | 1.09e-29 | 95 |
ectoderm | 1.09e-29 | 95 |
presumptive ectoderm | 1.09e-29 | 95 |
regional part of nervous system | 8.58e-26 | 54 |
ecto-epithelium | 1.50e-25 | 73 |
neural tube | 1.02e-24 | 52 |
neural rod | 1.02e-24 | 52 |
future spinal cord | 1.02e-24 | 52 |
neural keel | 1.02e-24 | 52 |
pre-chordal neural plate | 2.05e-24 | 49 |
structure with developmental contribution from neural crest | 2.61e-22 | 92 |
gray matter | 1.39e-21 | 34 |
brain | 1.69e-21 | 47 |
future brain | 1.69e-21 | 47 |
regional part of brain | 7.62e-21 | 46 |
anterior neural tube | 3.17e-20 | 40 |
regional part of forebrain | 9.64e-20 | 39 |
forebrain | 9.64e-20 | 39 |
future forebrain | 9.64e-20 | 39 |
brain grey matter | 3.13e-18 | 29 |
regional part of telencephalon | 3.13e-18 | 29 |
telencephalon | 3.13e-18 | 29 |
cerebral cortex | 7.89e-14 | 21 |
cerebral hemisphere | 7.89e-14 | 21 |
pallium | 7.89e-14 | 21 |
regional part of cerebral cortex | 7.23e-11 | 17 |
occipital lobe | 1.56e-08 | 10 |
visual cortex | 1.56e-08 | 10 |
neocortex | 1.56e-08 | 10 |