FFCP PHASE1:Hg19::chr19:13617222..13617243,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=773 | |EntrezGene=773 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1388 | |HGNC=1388 | ||
|TSSclassifier=strong | |||
|UniProt=O00555,Q9NS88,B5TYJ1 | |UniProt=O00555,Q9NS88,B5TYJ1 | ||
|association_with_transcript=30bp_to_ENST00000325084,ENST00000360228,NM_000068,NM_001127221,NM_001127222,NM_001174080,NM_023035,uc002mwy.3,uc010dze.2_5end | |association_with_transcript=30bp_to_ENST00000325084,ENST00000360228,NM_000068,NM_001127221,NM_001127222,NM_001174080,NM_023035,uc002mwy.3,uc010dze.2_5end | ||
|cluster_id=chr19:13617222..13617243,- | |||
|coexpression_cluster_id=C11 | |||
|description=CAGE_peak_6_at_CACNA1A_5end | |description=CAGE_peak_6_at_CACNA1A_5end | ||
|id=chr19:13617222..13617243,- | |id=chr19:13617222..13617243,- | ||
|ontology_enrichment_celltype=CL:0002620!1.23e-11!23 | |ontology_enrichment_celltype=CL:0002620!1.23e-11!23 | ||
|ontology_enrichment_celltype_v019=CL:0000228;2.32e-12;1!CL:0002372;2.32e-12;1!CL:0000047;8.28e-07;2!CL:0002596;8.28e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000228,1.57e-12,1;CL:0002372,1.57e-12,1;CL:0002596,7.61e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0006215;7.00e-35;3!UBERON:0005425;2.32e-12;1 | |||
|ontology_enrichment_disease=DOID:17!1.50e-08!5;DOID:450!1.50e-08!5;DOID:66!1.50e-08!5;DOID:423!1.50e-08!5;DOID:0080000!1.50e-08!5;DOID:11722!1.50e-08!5 | |ontology_enrichment_disease=DOID:17!1.50e-08!5;DOID:450!1.50e-08!5;DOID:66!1.50e-08!5;DOID:423!1.50e-08!5;DOID:0080000!1.50e-08!5;DOID:11722!1.50e-08!5 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.91e-25!82;UBERON:0001049!1.37e-24!57;UBERON:0005068!1.37e-24!57;UBERON:0006241!1.37e-24!57;UBERON:0007135!1.37e-24!57;UBERON:0005743!1.09e-23!86;UBERON:0000073!4.20e-23!94;UBERON:0001016!4.20e-23!94;UBERON:0002616!9.31e-22!59;UBERON:0001950!4.10e-21!20;UBERON:0002619!5.92e-21!22;UBERON:0002020!1.56e-20!34;UBERON:0003528!1.56e-20!34;UBERON:0001869!1.58e-20!32;UBERON:0000955!1.15e-19!69;UBERON:0006238!1.15e-19!69;UBERON:0001893!5.84e-19!34;UBERON:0003075!7.54e-19!86;UBERON:0007284!7.54e-19!86;UBERON:0000956!6.78e-18!25;UBERON:0000203!6.78e-18!25;UBERON:0002791!1.37e-17!33;UBERON:0002346!1.63e-17!90;UBERON:0002780!3.14e-16!41;UBERON:0001890!3.14e-16!41;UBERON:0006240!3.14e-16!41;UBERON:0003080!1.09e-15!42;UBERON:0004732!8.60e-13!13;UBERON:0007023!1.95e-12!115;UBERON:0004121!1.91e-11!169;UBERON:0004733!3.54e-11!12;UBERON:0002028!3.54e-11!12;UBERON:0007277!3.54e-11!12;UBERON:0000924!6.91e-11!173;UBERON:0006601!6.91e-11!173;UBERON:0003076!1.63e-10!15;UBERON:0003057!1.63e-10!15;UBERON:0000033!1.83e-10!123;UBERON:0000153!3.39e-10!129;UBERON:0007811!3.39e-10!129;UBERON:0001871!6.53e-10!7;UBERON:0003056!7.29e-10!61;UBERON:0002680!1.88e-09!9;UBERON:0001895!1.88e-09!9;UBERON:0010092!1.88e-09!9;UBERON:0000200!3.94e-07!6;UBERON:0000025!6.44e-07!194 | |||
|ontology_enrichment_uberon_v019=UBERON:0004732;1.38e-21;13!UBERON:0002680;2.10e-20;9!UBERON:0001895;2.10e-20;9!UBERON:0002037;8.65e-18;6!UBERON:0004733;2.23e-15;12!UBERON:0002028;2.23e-15;12!UBERON:0002902;9.90e-13;1!UBERON:0009899;9.90e-13;1!UBERON:0002581;2.32e-12;1!UBERON:0000941;2.32e-12;1!UBERON:0001785;2.32e-12;1!UBERON:0002464;2.32e-12;1!UBERON:0004904;2.32e-12;1!UBERON:0001021;2.32e-12;1!UBERON:0007190;2.32e-12;1!UBERON:0001872;9.27e-10;5!UBERON:0001016;1.98e-09;83!UBERON:0000073;6.00e-09;53!UBERON:0002616;6.00e-09;53!UBERON:0001950;1.08e-08;20!UBERON:0000200;2.81e-08;6!UBERON:0002619;5.96e-08;22!UBERON:0001869;2.10e-07;32!UBERON:0001893;3.54e-07;34!UBERON:0000956;4.72e-07;25!UBERON:0000203;4.72e-07;25!UBERON:0003714;8.28e-07;2!UBERON:0005162;8.28e-07;2!UBERON:0000122;8.28e-07;2!UBERON:0005396;8.28e-07;2!UBERON:0001017;9.45e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004732,1.51e-21,13;UBERON:0002680,2.90e-20,9;UBERON:0001895,2.90e-20,9;UBERON:0010092,2.90e-20,9;UBERON:0002037,8.67e-18,6;UBERON:0006215,8.67e-18,6;UBERON:0000073,1.73e-15,53;UBERON:0002616,1.73e-15,53;UBERON:0004733,2.85e-15,12;UBERON:0002028,2.85e-15,12;UBERON:0007277,2.85e-15,12;UBERON:0001049,1.29e-14,56;UBERON:0005068,1.29e-14,56;UBERON:0006241,1.29e-14,56;UBERON:0007135,1.29e-14,56;UBERON:0001016,4.65e-13,89;UBERON:0002902,9.92e-13,1;UBERON:0009899,9.92e-13,1;UBERON:0000941,1.40e-12,1;UBERON:0001785,1.40e-12,1;UBERON:0002464,1.40e-12,1;UBERON:0004904,1.40e-12,1;UBERON:0001021,1.40e-12,1;UBERON:0003902,1.40e-12,1;UBERON:0005425,1.40e-12,1;UBERON:0003076,2.87e-12,15;UBERON:0003057,2.87e-12,15;UBERON:0007190,3.45e-12,1;UBERON:0002581,4.31e-12,1;UBERON:0003075,5.02e-12,82;UBERON:0007284,5.02e-12,82;UBERON:0001017,5.15e-12,81;UBERON:0000955,1.07e-11,68;UBERON:0006238,1.07e-11,68;UBERON:0002346,2.07e-11,86;UBERON:0001872,1.32e-09,5;UBERON:0010371,3.18e-09,104;UBERON:0001950,1.31e-08,20;UBERON:0001869,3.20e-08,32;UBERON:0000200,3.90e-08,6;UBERON:0002619,7.10e-08,22;UBERON:0001893,9.59e-08,34;UBERON:0010314,5.41e-07,132;UBERON:0000956,5.51e-07,25;UBERON:0000203,5.51e-07,25;UBERON:0003714,6.42e-07,2;UBERON:0005162,6.42e-07,2;UBERON:0000122,6.42e-07,2;UBERON:0005396,7.61e-07,2 | |||
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|short_description=p6@CACNA1A | |short_description=p6@CACNA1A | ||
}} | }} |
Latest revision as of 01:11, 16 September 2015
Short description: | p6@CACNA1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_CACNA1A_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | 30bp_to_ENST00000325084, ENST00000360228, NM_000068, NM_001127221, NM_001127222, NM_001174080, NM_023035, uc002mwy.3, uc010dze.2_5end |
EntrezGene: | CACNA1A |
HGNC: | 1388 |
UniProt: | O00555Q9NS88B5TYJ1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multinucleate cell | 1.57e-12 | 1 |
myotube | 1.57e-12 | 1 |
smooth muscle cell of the carotid artery | 7.61e-07 | 2 |