FFCP PHASE1:Hg19::chr1:113249734..113249762,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=389 | |EntrezGene=389 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=669 | |HGNC=669 | ||
|TSSclassifier=strong | |||
|UniProt=P08134,Q5JR05,E9PN11,E9PLA2 | |UniProt=P08134,Q5JR05,E9PN11,E9PLA2 | ||
|association_with_transcript=0bp_to_ENST00000285735,ENST00000369636,ENST00000369637,ENST00000369638,ENST00000478447,ENST00000484054,ENST00000484280,ENST00000527563_5end | |association_with_transcript=0bp_to_ENST00000285735,ENST00000369636,ENST00000369637,ENST00000369638,ENST00000478447,ENST00000484054,ENST00000484280,ENST00000527563_5end | ||
|cluster_id=chr1:113249734..113249762,- | |||
|coexpression_cluster_id=C843 | |||
|description=CAGE_peak_1_at_RHOC_5end | |description=CAGE_peak_1_at_RHOC_5end | ||
|id=chr1:113249734..113249762,- | |id=chr1:113249734..113249762,- | ||
|ontology_enrichment_celltype=CL:0000222!1.09e-35!119;CL:0000220!3.97e-32!246;CL:0002321!6.78e-31!248;CL:0000055!1.19e-26!180;CL:0002371!1.61e-21!591;CL:0000183!2.33e-21!59;CL:0000144!1.48e-20!625;CL:0000680!4.81e-20!57;CL:0000056!4.81e-20!57;CL:0000355!4.81e-20!57;CL:0000187!3.25e-19!54;CL:0000192!3.09e-18!42;CL:0000514!3.09e-18!42;CL:0000548!3.65e-18!679;CL:0000004!3.65e-18!679;CL:0000255!3.65e-18!679;CL:0000012!4.40e-17!682;CL:0000359!1.54e-15!32;CL:0000393!6.32e-15!60;CL:0000211!6.32e-15!60;CL:0000213!2.01e-13!57;CL:0000215!2.01e-13!57;CL:0002078!3.06e-13!44;CL:0000066!9.55e-13!254;CL:0000115!5.11e-12!35;CL:0002139!3.12e-11!24;CL:0000057!8.52e-11!75;CL:1000497!1.04e-09!18;CL:0002518!1.04e-09!18;CL:1000449!1.12e-09!16;CL:0000071!2.19e-09!18;CL:0002546!2.19e-09!18;CL:0002681!3.93e-08!13;CL:0002584!3.93e-08!13;CL:0000003!7.96e-08!722;CL:0000076!9.18e-08!62;CL:1000507!1.96e-07!12;CL:1000494!1.96e-07!12 | |ontology_enrichment_celltype=CL:0000222!1.09e-35!119;CL:0000220!3.97e-32!246;CL:0002321!6.78e-31!248;CL:0000055!1.19e-26!180;CL:0002371!1.61e-21!591;CL:0000183!2.33e-21!59;CL:0000144!1.48e-20!625;CL:0000680!4.81e-20!57;CL:0000056!4.81e-20!57;CL:0000355!4.81e-20!57;CL:0000187!3.25e-19!54;CL:0000192!3.09e-18!42;CL:0000514!3.09e-18!42;CL:0000548!3.65e-18!679;CL:0000004!3.65e-18!679;CL:0000255!3.65e-18!679;CL:0000012!4.40e-17!682;CL:0000359!1.54e-15!32;CL:0000393!6.32e-15!60;CL:0000211!6.32e-15!60;CL:0000213!2.01e-13!57;CL:0000215!2.01e-13!57;CL:0002078!3.06e-13!44;CL:0000066!9.55e-13!254;CL:0000115!5.11e-12!35;CL:0002139!3.12e-11!24;CL:0000057!8.52e-11!75;CL:1000497!1.04e-09!18;CL:0002518!1.04e-09!18;CL:1000449!1.12e-09!16;CL:0000071!2.19e-09!18;CL:0002546!2.19e-09!18;CL:0002681!3.93e-08!13;CL:0002584!3.93e-08!13;CL:0000003!7.96e-08!722;CL:0000076!9.18e-08!62;CL:1000507!1.96e-07!12;CL:1000494!1.96e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0000359;1.25e-14;32!CL:0000192;3.16e-13;43!CL:0002139;3.09e-11;24!CL:0000187;9.02e-11;55!CL:0000115;1.45e-10;36!CL:1000497;1.43e-09;17!CL:0002518;1.43e-09;17!CL:1000449;1.44e-09;15!CL:0000071;2.17e-09;18!CL:0002078;2.20e-09;45!CL:0000213;1.13e-08;58!CL:0000215;1.13e-08;58!CL:0002681;5.11e-08;12!CL:0002584;5.11e-08;12!CL:0000393;6.01e-08;61!CL:0000211;6.01e-08;61!CL:1000507;7.32e-07;10!CL:1000494;7.32e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,1.89e-36,121;CL:0002321,1.27e-31,250;CL:0000680,3.04e-20,58;CL:0000056,3.04e-20,58;CL:0000355,3.04e-20,58;CL:0000187,2.06e-19,55;CL:0000192,2.06e-18,43;CL:0000514,2.06e-18,43;CL:0000359,1.54e-15,32;CL:0000393,3.89e-15,61;CL:0000211,3.89e-15,61;CL:0000213,7.48e-14,58;CL:0000215,7.48e-14,58;CL:0002078,1.09e-13,45;CL:0000066,1.45e-12,253;CL:0000115,1.80e-12,36;CL:0002139,3.12e-11,24;CL:0000057,5.41e-11,76;CL:1000497,1.42e-09,17;CL:0002518,1.42e-09,17;CL:1000449,1.46e-09,15;CL:0000071,2.19e-09,18;CL:0002546,2.19e-09,18;CL:0000076,3.94e-08,63;CL:0002681,5.11e-08,12;CL:0002584,5.11e-08,12;CL:1000507,7.42e-07,10;CL:1000494,7.42e-07,10 | |||
|ontology_enrichment_development_v019=CL:0000514;3.16e-13;43!CL:0000355;5.53e-11;58!CL:0000222;3.07e-10;121!CL:0002546;2.17e-09;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003914!3.87e-29!118;UBERON:0002049!8.81e-28!79;UBERON:0007798!8.81e-28!79;UBERON:0005256!1.45e-27!143;UBERON:0004872!7.60e-26!84;UBERON:0000055!3.00e-25!69;UBERON:0002100!3.14e-25!216;UBERON:0001981!6.72e-23!60;UBERON:0007500!6.72e-23!60;UBERON:0004537!6.72e-23!60;UBERON:0006965!6.72e-23!60;UBERON:0000490!2.59e-22!138;UBERON:0000914!5.13e-22!83;UBERON:0002329!5.13e-22!83;UBERON:0003077!5.13e-22!83;UBERON:0003059!5.13e-22!83;UBERON:0007282!5.13e-22!83;UBERON:0009618!5.13e-22!83;UBERON:0007285!5.13e-22!83;UBERON:0000486!1.02e-21!82;UBERON:0004290!5.07e-20!70;UBERON:0004535!1.21e-19!110;UBERON:0001009!1.32e-19!113;UBERON:0000119!3.01e-19!312;UBERON:0001637!5.82e-19!42;UBERON:0003509!5.82e-19!42;UBERON:0004572!5.82e-19!42;UBERON:0000483!1.10e-18!309;UBERON:0001134!2.49e-18!61;UBERON:0002036!2.49e-18!61;UBERON:0003082!2.49e-18!61;UBERON:0002385!3.82e-18!63;UBERON:0001015!3.82e-18!63;UBERON:0000383!3.82e-18!63;UBERON:0003104!5.74e-18!238;UBERON:0009142!5.74e-18!238;UBERON:0000467!2.07e-16!625;UBERON:0000475!2.77e-16!365;UBERON:0000480!2.87e-16!626;UBERON:0000468!3.09e-16!659;UBERON:0000926!3.69e-16!448;UBERON:0004120!3.69e-16!448;UBERON:0006603!3.69e-16!448;UBERON:0000481!3.29e-14!347;UBERON:0004573!3.80e-14!33;UBERON:0004571!3.80e-14!33;UBERON:0004111!6.85e-12!241;UBERON:0000477!1.34e-11!286;UBERON:0002050!2.90e-11!605;UBERON:0005423!2.90e-11!605;UBERON:0000923!2.94e-11!604;UBERON:0005291!2.94e-11!604;UBERON:0006598!2.94e-11!604;UBERON:0002532!2.94e-11!604;UBERON:0003103!3.50e-10!69;UBERON:0000922!3.81e-10!612;UBERON:0004211!1.12e-09!16;UBERON:0001285!1.12e-09!16;UBERON:0007684!1.12e-09!16;UBERON:0003220!1.12e-09!16;UBERON:0004208!1.12e-09!16;UBERON:0000487!1.26e-09!22;UBERON:0006555!2.00e-09!17;UBERON:0005103!2.00e-09!17;UBERON:0000083!2.00e-09!17;UBERON:0009201!2.00e-09!17;UBERON:0004819!2.00e-09!17;UBERON:0006553!2.00e-09!17;UBERON:0003074!2.00e-09!17;UBERON:0003060!2.00e-09!17;UBERON:0001986!2.19e-09!18;UBERON:0004638!2.19e-09!18;UBERON:0004852!2.19e-09!18;UBERON:0000025!3.55e-09!194;UBERON:0000353!3.55e-09!17;UBERON:0004876!5.26e-09!20;UBERON:0006914!6.60e-09!25;UBERON:0009569!6.84e-09!113;UBERON:0000080!7.09e-09!18;UBERON:0002120!7.09e-09!18;UBERON:0004875!7.09e-09!18;UBERON:0005721!7.09e-09!18;UBERON:0005754!7.09e-09!18;UBERON:0007297!7.09e-09!18;UBERON:0001225!3.93e-08!13;UBERON:0008987!3.93e-08!13;UBERON:0006554!4.18e-08!44;UBERON:0001008!6.04e-08!45;UBERON:0000947!7.18e-08!21;UBERON:0010191!7.18e-08!21;UBERON:0000058!7.48e-08!26;UBERON:0003064!1.07e-07!37;UBERON:0009773!1.96e-07!12;UBERON:0001231!1.96e-07!12;UBERON:0004810!1.96e-07!12;UBERON:0001851!2.76e-07!16;UBERON:0003887!3.00e-07!21;UBERON:0003081!4.90e-07!216;UBERON:0003102!9.43e-07!95 | |||
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| ||
|short_description=p1@RHOC | |short_description=p1@RHOC | ||
}} | }} |
Latest revision as of 05:08, 16 September 2015
Short description: | p1@RHOC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RHOC_5end |
Coexpression cluster: | C843_Alveolar_Mesenchymal_Hepatic_Placental_Renal_Smooth_Fibroblast |
Association with transcript: | 0bp_to_ENST00000285735, ENST00000369636, ENST00000369637, ENST00000369638, ENST00000478447, ENST00000484054, ENST00000484280, ENST00000527563_5end |
EntrezGene: | RHOC |
HGNC: | 669 |
UniProt: | P08134Q5JR05E9PN11E9PLA2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 1.89e-36 | 121 |
embryonic cell | 1.27e-31 | 250 |
muscle precursor cell | 3.04e-20 | 58 |
myoblast | 3.04e-20 | 58 |
multi-potent skeletal muscle stem cell | 3.04e-20 | 58 |
muscle cell | 2.06e-19 | 55 |
smooth muscle cell | 2.06e-18 | 43 |
smooth muscle myoblast | 2.06e-18 | 43 |
vascular associated smooth muscle cell | 1.54e-15 | 32 |
electrically responsive cell | 3.89e-15 | 61 |
electrically active cell | 3.89e-15 | 61 |
lining cell | 7.48e-14 | 58 |
barrier cell | 7.48e-14 | 58 |
meso-epithelial cell | 1.09e-13 | 45 |
epithelial cell | 1.45e-12 | 253 |
endothelial cell | 1.80e-12 | 36 |
endothelial cell of vascular tree | 3.12e-11 | 24 |
fibroblast | 5.41e-11 | 76 |
kidney cell | 1.42e-09 | 17 |
kidney epithelial cell | 1.42e-09 | 17 |
epithelial cell of nephron | 1.46e-09 | 15 |
blood vessel endothelial cell | 2.19e-09 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.19e-09 | 18 |
squamous epithelial cell | 3.94e-08 | 63 |
kidney cortical cell | 5.11e-08 | 12 |
renal cortical epithelial cell | 5.11e-08 | 12 |
kidney tubule cell | 7.42e-07 | 10 |
nephron tubule epithelial cell | 7.42e-07 | 10 |