FFCP PHASE1:Hg19::chr2:45169179..45169190,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:45169179..45169190,+
|short_description=p8@SIX3
|description=CAGE_peak_8_at_SIX3_5end
|association_with_transcript=142bp_to_NM_005413,uc002run.1_5end
|Ent...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6496 | |EntrezGene=6496 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10889 | |HGNC=10889 | ||
|TSSclassifier=strong | |||
|UniProt=O95343 | |UniProt=O95343 | ||
|association_with_transcript=142bp_to_NM_005413,uc002run.1_5end | |||
|cluster_id=chr2:45169179..45169190,+ | |||
|coexpression_cluster_id=C573 | |||
|description=CAGE_peak_8_at_SIX3_5end | |||
|id=chr2:45169179..45169190,+ | |||
|ontology_enrichment_celltype=CL:0002322!4.35e-12!5;CL:0000064!2.63e-09!3;CL:0005012!2.63e-09!3;CL:0000067!2.63e-09!3;CL:0002304!2.63e-09!3;CL:0002586!2.85e-09!3;CL:0000147!1.99e-08!14;CL:0000306!5.04e-07!4;CL:0002222!5.04e-07!4;CL:0002224!5.04e-07!4;CL:0000149!5.14e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0000064;2.94e-22;3!CL:0000067;2.94e-22;3!CL:0005012;2.94e-22;3!CL:0002304;2.94e-22;3!CL:0002586;6.20e-22;3!CL:0000306;9.47e-17;4!CL:0002222;9.47e-17;4!CL:0002224;9.47e-17;4!CL:0000149;1.34e-16;4!CL:0000075;4.51e-09;27!CL:0000342;2.09e-08;1!CL:0002565;2.09e-08;1!CL:0000147;2.75e-08;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0000064,3.05e-22,3;CL:0000067,3.05e-22,3;CL:0005012,3.05e-22,3;CL:0002304,3.05e-22,3;CL:0002586,3.78e-22,3;CL:0000306,8.76e-17,4;CL:0002222,8.76e-17,4;CL:0002224,8.76e-17,4;CL:0000149,9.24e-17,4;CL:0000075,4.45e-09,27;CL:0000342,2.02e-08,1;CL:0002565,2.02e-08,1;CL:0000147,2.38e-08,14 | |||
|ontology_enrichment_development_v019=UBERON:0003056;2.78e-10;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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| ||
|short_description=p8@SIX3 | |||
}} | }} |
Latest revision as of 09:41, 17 September 2015
Short description: | p8@SIX3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_SIX3_5end |
Coexpression cluster: | C573_Lens_small_retina_Ciliary_Retinal_eye_putamen |
Association with transcript: | 142bp_to_NM_005413, uc002run.1_5end |
EntrezGene: | SIX3 |
HGNC: | 10889 |
UniProt: | O95343 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ciliated cell | 3.05e-22 | 3 |
ciliated epithelial cell | 3.05e-22 | 3 |
multi-ciliated epithelial cell | 3.05e-22 | 3 |
non-pigmented ciliary epithelial cell | 3.05e-22 | 3 |
retinal pigment epithelial cell | 3.78e-22 | 3 |
crystallin accumulating cell | 8.76e-17 | 4 |
vertebrate lens cell | 8.76e-17 | 4 |
lens epithelial cell | 8.76e-17 | 4 |
visual pigment cell | 9.24e-17 | 4 |
columnar/cuboidal epithelial cell | 4.45e-09 | 27 |
pigment cell (sensu Vertebrata) | 2.02e-08 | 1 |
iris pigment epithelial cell | 2.02e-08 | 1 |
pigment cell | 2.38e-08 | 14 |