FFCP PHASE1:Hg19::chr2:55237340..55237419,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:55237340..55237419,- to FFCP PHASE1:Hg19::chr2:55237340..55237419,-: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57142 | |EntrezGene=57142 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14085 | |HGNC=14085 | ||
|TSSclassifier=strong | |||
|UniProt=Q7L7Q5,Q9NQC3 | |UniProt=Q7L7Q5,Q9NQC3 | ||
|association_with_transcript=50bp_to_NM_007008,uc002ryc.2_5end | |||
|cluster_id=chr2:55237340..55237419,- | |||
|coexpression_cluster_id=C3 | |||
|description=CAGE_peak_4_at_RTN4_5end | |||
|id=chr2:55237340..55237419,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;1.31e-09;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.91e-48!115;UBERON:0001049!3.57e-23!57;UBERON:0005068!3.57e-23!57;UBERON:0006241!3.57e-23!57;UBERON:0007135!3.57e-23!57;UBERON:0003080!8.62e-20!42;UBERON:0002780!2.12e-19!41;UBERON:0001890!2.12e-19!41;UBERON:0006240!2.12e-19!41;UBERON:0002616!5.89e-18!59;UBERON:0000955!2.30e-16!69;UBERON:0006238!2.30e-16!69;UBERON:0001017!1.35e-15!82;UBERON:0002020!1.88e-15!34;UBERON:0003528!1.88e-15!34;UBERON:0005743!1.98e-15!86;UBERON:0001893!2.13e-15!34;UBERON:0002791!9.05e-15!33;UBERON:0001869!1.37e-14!32;UBERON:0002346!1.62e-13!90;UBERON:0003075!1.98e-13!86;UBERON:0007284!1.98e-13!86;UBERON:0000073!3.08e-13!94;UBERON:0001016!3.08e-13!94;UBERON:0002619!7.33e-13!22;UBERON:0001950!1.10e-11!20;UBERON:0000956!2.10e-10!25;UBERON:0000203!2.10e-10!25;UBERON:0003056!2.15e-10!61;UBERON:0000153!1.51e-08!129;UBERON:0007811!1.51e-08!129;UBERON:0000033!2.23e-07!123;UBERON:0002420!6.18e-07!9;UBERON:0007245!6.18e-07!9;UBERON:0010009!6.18e-07!9;UBERON:0010011!6.18e-07!9;UBERON:0000454!6.18e-07!9;UBERON:0002308!9.64e-07!9;UBERON:0000125!9.64e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.11e-15;41!UBERON:0001890;1.11e-15;41!UBERON:0001893;7.63e-15;34!UBERON:0007023;1.48e-14;114!UBERON:0001869;1.68e-14;32!UBERON:0003528;1.98e-14;34!UBERON:0002020;1.98e-14;34!UBERON:0002791;2.79e-14;32!UBERON:0002619;5.61e-14;22!UBERON:0000073;5.79e-14;53!UBERON:0002616;5.79e-14;53!UBERON:0001950;1.34e-12;20!UBERON:0000956;4.02e-11;25!UBERON:0000203;4.02e-11;25!UBERON:0001017;8.57e-10;75!UBERON:0000955;2.21e-09;68!UBERON:0002420;6.62e-08;9!UBERON:0007245;6.62e-08;9!UBERON:0010009;6.62e-08;9!UBERON:0010011;6.62e-08;9!UBERON:0000454;6.62e-08;9!UBERON:0000125;1.12e-07;9!UBERON:0002308;1.12e-07;9!UBERON:0001016;1.47e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,9.34e-56,114;UBERON:0001049,1.29e-26,56;UBERON:0005068,1.29e-26,56;UBERON:0006241,1.29e-26,56;UBERON:0007135,1.29e-26,56;UBERON:0000073,7.91e-25,53;UBERON:0002616,7.91e-25,53;UBERON:0002780,1.07e-21,41;UBERON:0001890,1.07e-21,41;UBERON:0003080,1.07e-21,41;UBERON:0006240,1.07e-21,41;UBERON:0000955,8.85e-19,68;UBERON:0006238,8.85e-19,68;UBERON:0001017,5.71e-18,81;UBERON:0003528,4.49e-17,34;UBERON:0002020,4.49e-17,34;UBERON:0001893,5.18e-17,34;UBERON:0001869,4.64e-16,32;UBERON:0002791,9.01e-16,32;UBERON:0001016,1.09e-14,89;UBERON:0002346,1.25e-14,86;UBERON:0003075,1.58e-14,82;UBERON:0007284,1.58e-14,82;UBERON:0002619,4.62e-14,22;UBERON:0001950,1.10e-12,20;UBERON:0000956,3.41e-11,25;UBERON:0000203,3.41e-11,25;UBERON:0003056,3.46e-11,61;UBERON:0010371,2.13e-10,104;UBERON:0011216,2.59e-08,223;UBERON:0002420,6.74e-08,9;UBERON:0007245,6.74e-08,9;UBERON:0010009,6.74e-08,9;UBERON:0010011,6.74e-08,9;UBERON:0000454,6.74e-08,9;UBERON:0000125,1.14e-07,9;UBERON:0002308,1.14e-07,9;UBERON:0004121,8.97e-07,171;UBERON:0000924,8.97e-07,171;UBERON:0006601,8.97e-07,171 | |||
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| ||
|short_description=p4@RTN4 | |||
}} | }} |
Latest revision as of 16:37, 17 September 2015
Short description: | p4@RTN4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RTN4_5end |
Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
Association with transcript: | 50bp_to_NM_007008, uc002ryc.2_5end |
EntrezGene: | RTN4 |
HGNC: | 14085 |
UniProt: | Q7L7Q5Q9NQC3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data