FFCP PHASE1:Hg19::chr11:34073195..34073266,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:34073195..34073266,+ to FFCP PHASE1:Hg19::chr11:34073195..34073266,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4076 | |EntrezGene=4076 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6743 | |HGNC=6743 | ||
|TSSclassifier=strong | |||
|UniProt=Q14444 | |UniProt=Q14444 | ||
|association_with_transcript=0bp_to_ENST00000341394,NM_005898,NM_203364,uc001mvg.2,uc001mvh.1_5end | |||
|cluster_id=chr11:34073195..34073266,+ | |||
|description=CAGE_peak_1_at_CAPRIN1_5end | |||
|id=chr11:34073195..34073266,+ | |||
|ontology_enrichment_celltype=CL:0000055!5.52e-12!180;CL:0000057!7.06e-07!75 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,8.23e-07,76 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!4.54e-21!94;UBERON:0001016!4.54e-21!94;UBERON:0001017!2.66e-20!82;UBERON:0000955!5.81e-20!69;UBERON:0006238!5.81e-20!69;UBERON:0005743!1.60e-19!86;UBERON:0003080!1.27e-16!42;UBERON:0000924!1.61e-16!173;UBERON:0006601!1.61e-16!173;UBERON:0002780!3.30e-16!41;UBERON:0001890!3.30e-16!41;UBERON:0006240!3.30e-16!41;UBERON:0002616!4.59e-16!59;UBERON:0004121!6.73e-16!169;UBERON:0001869!2.97e-15!32;UBERON:0001049!3.57e-15!57;UBERON:0005068!3.57e-15!57;UBERON:0006241!3.57e-15!57;UBERON:0007135!3.57e-15!57;UBERON:0001893!9.77e-15!34;UBERON:0000033!1.96e-14!123;UBERON:0002791!3.14e-14!33;UBERON:0002020!5.46e-14!34;UBERON:0003528!5.46e-14!34;UBERON:0000153!7.45e-14!129;UBERON:0007811!7.45e-14!129;UBERON:0000956!7.45e-13!25;UBERON:0000203!7.45e-13!25;UBERON:0002619!8.84e-12!22;UBERON:0001950!2.83e-11!20;UBERON:0003056!7.36e-11!61;UBERON:0002346!1.48e-10!90;UBERON:0003075!5.26e-10!86;UBERON:0007284!5.26e-10!86;UBERON:0000475!5.63e-09!365;UBERON:0000914!1.39e-07!83;UBERON:0002329!1.39e-07!83;UBERON:0003077!1.39e-07!83;UBERON:0003059!1.39e-07!83;UBERON:0007282!1.39e-07!83;UBERON:0009618!1.39e-07!83;UBERON:0007285!1.39e-07!83 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;4.87e-14;32!UBERON:0002791;2.93e-13;32!UBERON:0001893;4.27e-13;34!UBERON:0000956;6.98e-13;25!UBERON:0000203;6.98e-13;25!UBERON:0003528;1.45e-12;34!UBERON:0002020;1.45e-12;34!UBERON:0002619;8.26e-12;22!UBERON:0002780;8.59e-12;41!UBERON:0001890;8.59e-12;41!UBERON:0001950;2.62e-11;20!UBERON:0000955;7.61e-10;68!UBERON:0001017;1.69e-09;75!UBERON:0001016;2.07e-09;83!UBERON:0000073;7.32e-09;53!UBERON:0002616;7.32e-09;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.06e-21,89;UBERON:0001017,6.83e-20,81;UBERON:0000955,1.52e-19,68;UBERON:0006238,1.52e-19,68;UBERON:0002780,3.30e-16,41;UBERON:0001890,3.30e-16,41;UBERON:0003080,3.30e-16,41;UBERON:0006240,3.30e-16,41;UBERON:0004121,6.19e-16,171;UBERON:0000924,6.19e-16,171;UBERON:0006601,6.19e-16,171;UBERON:0001869,2.97e-15,32;UBERON:0000073,6.26e-15,53;UBERON:0002616,6.26e-15,53;UBERON:0001049,8.93e-15,56;UBERON:0005068,8.93e-15,56;UBERON:0006241,8.93e-15,56;UBERON:0007135,8.93e-15,56;UBERON:0001893,9.77e-15,34;UBERON:0002791,3.40e-14,32;UBERON:0003528,5.46e-14,34;UBERON:0002020,5.46e-14,34;UBERON:0000956,7.45e-13,25;UBERON:0000203,7.45e-13,25;UBERON:0010314,2.92e-12,132;UBERON:0002619,8.84e-12,22;UBERON:0001950,2.83e-11,20;UBERON:0003056,5.38e-11,61;UBERON:0002346,1.42e-10,86;UBERON:0010371,1.78e-10,104;UBERON:0003075,5.06e-10,82;UBERON:0007284,5.06e-10,82;UBERON:0011216,6.77e-08,223 | |||
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|short_description=p1@CAPRIN1 | |||
}} | }} |
Latest revision as of 17:22, 17 September 2015
Short description: | p1@CAPRIN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CAPRIN1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000341394, NM_005898, NM_203364, uc001mvg.2, uc001mvh.1_5end |
EntrezGene: | CAPRIN1 |
HGNC: | 6743 |
UniProt: | Q14444 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 8.23e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.06e-21 | 89 |
central nervous system | 6.83e-20 | 81 |
brain | 1.52e-19 | 68 |
future brain | 1.52e-19 | 68 |
regional part of forebrain | 3.30e-16 | 41 |
forebrain | 3.30e-16 | 41 |
anterior neural tube | 3.30e-16 | 41 |
future forebrain | 3.30e-16 | 41 |
ectoderm-derived structure | 6.19e-16 | 171 |
ectoderm | 6.19e-16 | 171 |
presumptive ectoderm | 6.19e-16 | 171 |
cerebral hemisphere | 2.97e-15 | 32 |
regional part of nervous system | 6.26e-15 | 53 |
regional part of brain | 6.26e-15 | 53 |
neural tube | 8.93e-15 | 56 |
neural rod | 8.93e-15 | 56 |
future spinal cord | 8.93e-15 | 56 |
neural keel | 8.93e-15 | 56 |
telencephalon | 9.77e-15 | 34 |
regional part of telencephalon | 3.40e-14 | 32 |
brain grey matter | 5.46e-14 | 34 |
gray matter | 5.46e-14 | 34 |
cerebral cortex | 7.45e-13 | 25 |
pallium | 7.45e-13 | 25 |
structure with developmental contribution from neural crest | 2.92e-12 | 132 |
regional part of cerebral cortex | 8.84e-12 | 22 |
neocortex | 2.83e-11 | 20 |
pre-chordal neural plate | 5.38e-11 | 61 |
neurectoderm | 1.42e-10 | 86 |
ecto-epithelium | 1.78e-10 | 104 |
neural plate | 5.06e-10 | 82 |
presumptive neural plate | 5.06e-10 | 82 |
organ system subdivision | 6.77e-08 | 223 |