FFCP PHASE1:Hg19::chr12:56575310..56575344,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:56575310..56575344,-
|short_description=p3@SMARCC2
|description=CAGE_peak_3_at_SMARCC2_5end
|association_with_transcript=-400bp_to_ENST00000548130_5end
|...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6601 | |EntrezGene=6601 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11105 | |HGNC=11105 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-400bp_to_ENST00000548130_5end | |||
|cluster_id=chr12:56575310..56575344,- | |||
|description=CAGE_peak_3_at_SMARCC2_5end | |||
|id=chr12:56575310..56575344,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.41e-15!57;UBERON:0005068!1.41e-15!57;UBERON:0006241!1.41e-15!57;UBERON:0007135!1.41e-15!57;UBERON:0007023!6.24e-15!115;UBERON:0005743!5.80e-14!86;UBERON:0003080!3.28e-13!42;UBERON:0001017!4.15e-13!82;UBERON:0002780!7.31e-13!41;UBERON:0001890!7.31e-13!41;UBERON:0006240!7.31e-13!41;UBERON:0002346!1.44e-12!90;UBERON:0003075!1.78e-12!86;UBERON:0007284!1.78e-12!86;UBERON:0000073!3.22e-12!94;UBERON:0001016!3.22e-12!94;UBERON:0002616!6.79e-12!59;UBERON:0002020!1.09e-11!34;UBERON:0003528!1.09e-11!34;UBERON:0000955!1.20e-11!69;UBERON:0006238!1.20e-11!69;UBERON:0001893!1.27e-11!34;UBERON:0002791!1.55e-11!33;UBERON:0001869!2.58e-11!32;UBERON:0003056!5.46e-11!61;UBERON:0001950!6.39e-11!20;UBERON:0000956!2.50e-10!25;UBERON:0000203!2.50e-10!25;UBERON:0002619!2.65e-10!22;UBERON:0000153!1.06e-08!129;UBERON:0007811!1.06e-08!129;UBERON:0000924!5.32e-08!173;UBERON:0006601!5.32e-08!173;UBERON:0000033!5.41e-08!123;UBERON:0004121!8.31e-08!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;6.52e-15;20!UBERON:0002619;7.31e-15;22!UBERON:0002791;1.07e-14;32!UBERON:0001869;9.04e-14;32!UBERON:0003528;1.47e-13;34!UBERON:0002020;1.47e-13;34!UBERON:0000956;1.64e-13;25!UBERON:0000203;1.64e-13;25!UBERON:0001893;2.30e-13;34!UBERON:0002780;1.45e-12;41!UBERON:0001890;1.45e-12;41!UBERON:0000073;7.09e-11;53!UBERON:0002616;7.09e-11;53!UBERON:0001017;1.06e-07;75!UBERON:0000955;4.85e-07;68!UBERON:0001016;6.90e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.78e-18,114;UBERON:0001049,2.31e-17,56;UBERON:0005068,2.31e-17,56;UBERON:0006241,2.31e-17,56;UBERON:0007135,2.31e-17,56;UBERON:0000073,1.39e-16,53;UBERON:0002616,1.39e-16,53;UBERON:0003528,3.07e-16,34;UBERON:0002020,3.07e-16,34;UBERON:0002791,3.11e-16,32;UBERON:0002780,3.13e-16,41;UBERON:0001890,3.13e-16,41;UBERON:0003080,3.13e-16,41;UBERON:0006240,3.13e-16,41;UBERON:0001893,9.68e-16,34;UBERON:0001869,3.07e-15,32;UBERON:0001950,3.94e-15,20;UBERON:0002619,4.60e-15,22;UBERON:0001017,7.79e-15,81;UBERON:0002346,8.79e-15,86;UBERON:0003075,2.64e-14,82;UBERON:0007284,2.64e-14,82;UBERON:0000956,8.32e-14,25;UBERON:0000203,8.32e-14,25;UBERON:0000955,1.64e-13,68;UBERON:0006238,1.64e-13,68;UBERON:0003056,2.37e-13,61;UBERON:0001016,4.02e-13,89;UBERON:0010371,1.35e-10,104;UBERON:0004121,2.28e-09,171;UBERON:0000924,2.28e-09,171;UBERON:0006601,2.28e-09,171;UBERON:0010314,4.64e-09,132 | |||
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| ||
|short_description=p3@SMARCC2 | |||
}} | }} |
Latest revision as of 10:16, 19 September 2015
Short description: | p3@SMARCC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SMARCC2_5end |
Coexpression cluster: | NA |
Association with transcript: | -400bp_to_ENST00000548130_5end |
EntrezGene: | SMARCC2 |
HGNC: | 11105 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 2.78e-18 | 114 |
neural tube | 2.31e-17 | 56 |
neural rod | 2.31e-17 | 56 |
future spinal cord | 2.31e-17 | 56 |
neural keel | 2.31e-17 | 56 |
regional part of nervous system | 1.39e-16 | 53 |
regional part of brain | 1.39e-16 | 53 |
brain grey matter | 3.07e-16 | 34 |
gray matter | 3.07e-16 | 34 |
regional part of telencephalon | 3.11e-16 | 32 |
regional part of forebrain | 3.13e-16 | 41 |
forebrain | 3.13e-16 | 41 |
anterior neural tube | 3.13e-16 | 41 |
future forebrain | 3.13e-16 | 41 |
telencephalon | 9.68e-16 | 34 |
cerebral hemisphere | 3.07e-15 | 32 |
neocortex | 3.94e-15 | 20 |
regional part of cerebral cortex | 4.60e-15 | 22 |
central nervous system | 7.79e-15 | 81 |
neurectoderm | 8.79e-15 | 86 |
neural plate | 2.64e-14 | 82 |
presumptive neural plate | 2.64e-14 | 82 |
cerebral cortex | 8.32e-14 | 25 |
pallium | 8.32e-14 | 25 |
brain | 1.64e-13 | 68 |
future brain | 1.64e-13 | 68 |
pre-chordal neural plate | 2.37e-13 | 61 |
nervous system | 4.02e-13 | 89 |
ecto-epithelium | 1.35e-10 | 104 |
ectoderm-derived structure | 2.28e-09 | 171 |
ectoderm | 2.28e-09 | 171 |
presumptive ectoderm | 2.28e-09 | 171 |
structure with developmental contribution from neural crest | 4.64e-09 | 132 |