FFCP PHASE1:Mm9::chr13:95055307..95055396,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=107767 | |EntrezGene=107767 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |MCL_coexpression_id=1 | ||
|TSSclassifier=NA | |||
|UniProt=Q3TD71,Q8K021 | |UniProt=Q3TD71,Q8K021 | ||
|association_with_transcript=-71bp_to_NM_029153,uc007rls.1_5end | |association_with_transcript=-71bp_to_NM_029153,uc007rls.1_5end | ||
|cluster_id=chr13:95055307..95055396,- | |||
|description=CAGE_peak_1_at_Scamp1_5end | |description=CAGE_peak_1_at_Scamp1_5end | ||
|id=chr13:95055307..95055396,- | |id=chr13:95055307..95055396,- | ||
|ontology_enrichment_celltype=CL:0000117!9.85e-13!23;CL:0000337!9.85e-13!23;CL:0000540!2.90e-11!33;CL:0000047!2.90e-11!33;CL:0000031!2.90e-11!33;CL:0000404!2.90e-11!33;CL:0000393!4.76e-10!39;CL:0000211!4.76e-10!39;CL:0000221!4.74e-09!44;CL:0000133!4.74e-09!44;CL:0002319!4.85e-09!43;CL:0000055!2.51e-08!50;CL:0002321!5.49e-07!70;CL:0000220!5.49e-07!70 | |ontology_enrichment_celltype=CL:0000117!9.85e-13!23;CL:0000337!9.85e-13!23;CL:0000540!2.90e-11!33;CL:0000047!2.90e-11!33;CL:0000031!2.90e-11!33;CL:0000404!2.90e-11!33;CL:0000393!4.76e-10!39;CL:0000211!4.76e-10!39;CL:0000221!4.74e-09!44;CL:0000133!4.74e-09!44;CL:0002319!4.85e-09!43;CL:0000055!2.51e-08!50;CL:0002321!5.49e-07!70;CL:0000220!5.49e-07!70 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,9.84e-13,23;CL:0000337,9.84e-13,23;CL:0000540,2.90e-11,33;CL:0000047,2.90e-11,33;CL:0000031,2.90e-11,33;CL:0000404,2.90e-11,33;CL:0000393,4.75e-10,39;CL:0000211,4.75e-10,39;CL:0000221,4.74e-09,44;CL:0000133,4.74e-09,44;CL:0002319,4.85e-09,43;CL:0002321,5.49e-07,70 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!1.44e-26!102;UBERON:0000924!1.44e-26!102;UBERON:0006601!1.44e-26!102;UBERON:0001017!3.65e-25!73;UBERON:0005743!3.65e-25!73;UBERON:0000073!8.66e-24!75;UBERON:0001016!8.66e-24!75;UBERON:0001049!7.06e-22!52;UBERON:0005068!7.06e-22!52;UBERON:0006241!7.06e-22!52;UBERON:0007135!7.06e-22!52;UBERON:0000033!1.09e-21!63;UBERON:0000955!1.35e-20!50;UBERON:0006238!1.35e-20!50;UBERON:0002346!2.71e-20!71;UBERON:0003075!2.71e-20!71;UBERON:0007284!2.71e-20!71;UBERON:0002616!6.29e-20!49;UBERON:0003080!7.03e-17!40;UBERON:0003056!7.08e-17!49;UBERON:0002020!1.47e-16!34;UBERON:0002780!3.17e-16!39;UBERON:0001890!3.17e-16!39;UBERON:0006240!3.17e-16!39;UBERON:0002791!2.67e-13!29;UBERON:0003528!2.67e-13!29;UBERON:0001893!2.67e-13!29;UBERON:0004111!2.03e-11!122;UBERON:0000025!3.22e-09!114;UBERON:0000956!7.31e-09!21;UBERON:0001869!7.31e-09!21;UBERON:0000203!7.31e-09!21;UBERON:0007023!4.70e-08!51;UBERON:0002619!5.02e-08!17;UBERON:0000468!1.15e-07!333 | |ontology_enrichment_uberon=UBERON:0004121!1.44e-26!102;UBERON:0000924!1.44e-26!102;UBERON:0006601!1.44e-26!102;UBERON:0001017!3.65e-25!73;UBERON:0005743!3.65e-25!73;UBERON:0000073!8.66e-24!75;UBERON:0001016!8.66e-24!75;UBERON:0001049!7.06e-22!52;UBERON:0005068!7.06e-22!52;UBERON:0006241!7.06e-22!52;UBERON:0007135!7.06e-22!52;UBERON:0000033!1.09e-21!63;UBERON:0000955!1.35e-20!50;UBERON:0006238!1.35e-20!50;UBERON:0002346!2.71e-20!71;UBERON:0003075!2.71e-20!71;UBERON:0007284!2.71e-20!71;UBERON:0002616!6.29e-20!49;UBERON:0003080!7.03e-17!40;UBERON:0003056!7.08e-17!49;UBERON:0002020!1.47e-16!34;UBERON:0002780!3.17e-16!39;UBERON:0001890!3.17e-16!39;UBERON:0006240!3.17e-16!39;UBERON:0002791!2.67e-13!29;UBERON:0003528!2.67e-13!29;UBERON:0001893!2.67e-13!29;UBERON:0004111!2.03e-11!122;UBERON:0000025!3.22e-09!114;UBERON:0000956!7.31e-09!21;UBERON:0001869!7.31e-09!21;UBERON:0000203!7.31e-09!21;UBERON:0007023!4.70e-08!51;UBERON:0002619!5.02e-08!17;UBERON:0000468!1.15e-07!333 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.42e-27,95;UBERON:0000924,2.42e-27,95;UBERON:0006601,2.42e-27,95;UBERON:0001017,3.64e-25,73;UBERON:0001016,8.64e-24,75;UBERON:0000073,2.20e-23,54;UBERON:0010371,6.01e-23,73;UBERON:0001049,7.05e-22,52;UBERON:0005068,7.05e-22,52;UBERON:0006241,7.05e-22,52;UBERON:0007135,7.05e-22,52;UBERON:0002346,1.90e-21,64;UBERON:0003075,1.90e-21,64;UBERON:0007284,1.90e-21,64;UBERON:0000955,1.89e-18,47;UBERON:0006238,1.89e-18,47;UBERON:0002616,8.42e-18,46;UBERON:0003080,7.03e-17,40;UBERON:0003056,7.07e-17,49;UBERON:0002020,1.47e-16,34;UBERON:0002780,3.16e-16,39;UBERON:0001890,3.16e-16,39;UBERON:0006240,3.16e-16,39;UBERON:0010314,1.50e-13,92;UBERON:0003528,2.67e-13,29;UBERON:0002791,2.67e-13,29;UBERON:0001893,2.67e-13,29;UBERON:0004111,2.03e-11,122;UBERON:0000025,3.22e-09,114;UBERON:0000956,7.31e-09,21;UBERON:0001869,7.31e-09,21;UBERON:0000203,7.31e-09,21;UBERON:0007023,4.69e-08,51;UBERON:0002619,5.02e-08,17 | |||
|phase1_expression=28.5064947846533,28.6159834264276,25.479957405814,44.462239062104,41.5743455855468,21.6564260766338,23.8284893407436,1.67860320474049,0,0.234064526321993,0.856089841127525,0.957265907944037,0.684802919724823,0.262261207256992,5.99597571268193,2.63217847606774,4.19737126876888,0.630924330716475,0.822686601634433,0.42438965179803,32.1463636771044,8.63831275447702,8.61959304158487,16.6392119705143,22.2527002635155,24.1177424928308,21.9688618041128,17.2376986148711,26.0332084655232,33.7720373878307,23.281703618807,2.54012269383853,6.1506478758457,0,14.1537293678125,13.6312409193964,14.4960242946282,22.600708059793,15.626706890476,15.7057123192139,18.2351761289614,16.3930916390027,17.4783727091215,26.1865381389201,29.9061947097568,31.9371348761326,12.5182615095686,22.456591107186,30.9757517655605,47.4408953741251,28.4172435899486,31.6255641602937,0.335565212115473,0.725362142011344,0,22.1243114990914,17.7650732762029,20.6268836910977,78.7011032743835,83.5805747249812,82.3980824558033,18.6364492638023,26.6788438833342,14.8483453351431,24.7216590641744,14.209602298922,17.3768064100675,24.2057532352579,28.5146433848314,29.9713183096353,35.3345935070322,82.2674835082954,73.5492241368873,34.2974237801871,28.370259421398,43.203282970671,125.532104339303,92.3179454355907,96.7721159514334,75.8346154448615,78.1304476364578,81.2624858068546,93.2471216664612,100.734507195671,90.150966188318,109.012576625257,94.6771677314035,90.9629295627467,16.2811315666346,18.3638891059489,31.3053647797812,26.673140186423,37.3984233539263,40.4777393728363,50.6825605609182,69.8921943871843,27.9484396062186,15.5091593546033,12.4697282209377,14.4869225549239,27.6053102762294,14.115912515575,15.2883143823987,14.2213340630666,25.1129607573008,20.2687892380079,21.2320266906209,30.2587281255509,8.2860122767095,29.0946592567057,18.7364152907427,25.5751001782199,19.602317266765,25.6228488939458,29.867531612469,27.1439837272099,28.427421289453,30.9442623808611,16.8076004870476,14.3972496453194,9.27534377533653,13.091631834651,61.5092812019803,82.2714039602448,66.1851593530518,32.6985030666997,7.30872259486114,6.59893004092748,9.65733725755292,87.028361494202,60.3900795720587,36.3141077606178,69.0082551163338,56.7688315273334,77.7127286652755,72.3596033282199,17.2108524907035,14.4312085907708,29.0631172198726,72.6024402808335,16.1349349273753,21.8406999211799,23.5881390045007,26.5240479390859,30.9566071138542,32.1565437914973,38.2303036203694,62.0888089773638,22.2035032720827,17.2086532952716,20.2343792788541,17.535658594206,23.9120634334014,27.163668988729,33.9540525073107,17.5150154800274,14.0442637462647,9.77922047035918,13.0715209721973,12.2204205795946,15.9477720787145,17.8261440846405,19.4130683179872,21.6440654922144,16.8151153047242,18.3701816352822,16.901224288176,15.880086561935,16.455984991348,21.5059377943615,21.7264409582893,22.3685980760758,25.0287131431798,23.7545361205858,59.7223453922121,48.468072430643,43.9456981368451,26.4450566663544,17.4896365438892,17.4177503895329,18.2991795077373,19.5633018884642,16.0112191568307,16.5496294717926,25.6245693234036,18.7756808385372,14.0747716928151,20.8904295643208,19.8863368861503,39.5480539807857,34.5820879799511,32.2608862672075,19.3461258972143,17.9370164797274,22.5415471346161,26.4746726198908,24.8259183574561,23.1448205638051,27.9505494089217,33.2122832954105,35.3247137643093,34.9213973898695,30.8310732170635,10.3443965543978,11.4004217165658,8.99448449539415,11.3601667977562,11.3353265083636,11.4581633301639,16.3986798346962,23.5096078823801,14.8263163121564,28.7536413054709,24.9334434937897,28.0833905803105,38.6445683259081,28.1653939229402,26.0519501536218,29.1910040463235,13.0749074121634,13.0371981153621,17.4837438348444,18.3058393665032,22.4458384972033,26.8989314201196,22.4403695036469,23.3300013277163,18.3815692408483,26.9478559031153,25.5626770956551,26.7661721892138,32.1120910050956,25.6345182696763,17.4049818821987,28.5223278351041,25.6621174063401,89.2661280332123,81.4621221815812,10.0000316679772,20.1976741763498,26.1871822115493,20.6932534477218,29.7284288871263,21.2682230177771,21.6114713859922,33.9691836946599,27.5271277138928,30.3946092227764,35.1806122372406,83.5435422696698,24.4136946558222,16.3820355373875,21.8268525533792,29.6946221350564,49.1157011857862,19.4224508923985,19.6510312027088,25.2730806872903,26.2818684663888,28.8989039067292,29.4608254211772,23.2661586865604,24.241821730161,36.9763006784905,47.4383738587494,55.6931933540209,59.2364914011591,27.0091641046965,29.7524972700335,30.6501960095177,42.3843158405034,42.8085162244969,41.1372551505302,30.1420299623453,20.1817668934791,31.1393144169816,56.6757983001252,46.1681508236144,39.397320113801,32.6292923861323,28.7687349047559,31.6791936507968,24.7758711135373,91.7855244952023,6.83483523191411,14.6534676253888,13.519200497989,8.09984365120171,5.46776910884101,3.66045077130436,16.3179292794101,14.1350966846895,14.7873971970733,30.5494597764836,14.0769517143605,16.8755157715284,22.3571055501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| ||
|short_description=p1@Scamp1 | |short_description=p1@Scamp1 | ||
}} | }} |
Latest revision as of 13:35, 25 September 2015
Short description: | p1@Scamp1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Scamp1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -71bp_to_NM_029153, uc007rls.1_5end |
EntrezGene: | Scamp1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 9.84e-13 | 23 |
neuroblast (sensu Vertebrata) | 9.84e-13 | 23 |
neuron | 2.90e-11 | 33 |
neuronal stem cell | 2.90e-11 | 33 |
neuroblast | 2.90e-11 | 33 |
electrically signaling cell | 2.90e-11 | 33 |
electrically responsive cell | 4.75e-10 | 39 |
electrically active cell | 4.75e-10 | 39 |
ectodermal cell | 4.74e-09 | 44 |
neurectodermal cell | 4.74e-09 | 44 |
neural cell | 4.85e-09 | 43 |
embryonic cell | 5.49e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 2.42e-27 | 95 |
ectoderm | 2.42e-27 | 95 |
presumptive ectoderm | 2.42e-27 | 95 |
central nervous system | 3.64e-25 | 73 |
nervous system | 8.64e-24 | 75 |
regional part of nervous system | 2.20e-23 | 54 |
ecto-epithelium | 6.01e-23 | 73 |
neural tube | 7.05e-22 | 52 |
neural rod | 7.05e-22 | 52 |
future spinal cord | 7.05e-22 | 52 |
neural keel | 7.05e-22 | 52 |
neurectoderm | 1.90e-21 | 64 |
neural plate | 1.90e-21 | 64 |
presumptive neural plate | 1.90e-21 | 64 |
brain | 1.89e-18 | 47 |
future brain | 1.89e-18 | 47 |
regional part of brain | 8.42e-18 | 46 |
anterior neural tube | 7.03e-17 | 40 |
pre-chordal neural plate | 7.07e-17 | 49 |
gray matter | 1.47e-16 | 34 |
regional part of forebrain | 3.16e-16 | 39 |
forebrain | 3.16e-16 | 39 |
future forebrain | 3.16e-16 | 39 |
structure with developmental contribution from neural crest | 1.50e-13 | 92 |
brain grey matter | 2.67e-13 | 29 |
regional part of telencephalon | 2.67e-13 | 29 |
telencephalon | 2.67e-13 | 29 |
anatomical conduit | 2.03e-11 | 122 |
tube | 3.22e-09 | 114 |
cerebral cortex | 7.31e-09 | 21 |
cerebral hemisphere | 7.31e-09 | 21 |
pallium | 7.31e-09 | 21 |
adult organism | 4.69e-08 | 51 |
regional part of cerebral cortex | 5.02e-08 | 17 |