FFCP PHASE1:Mm9::chr13:98011051..98011071,+: Difference between revisions
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{{FFCP|EntrezGene=13803|HGNC=|MCL_coexpression_id=13|UniProt=O35709|association_with_transcript=0bp_to_ENSMUST00000041623,NM_007930,uc007rod.2_5end|description=CAGE_peak_1_at_Enc1_5end|id=chr13:98011051..98011071,+|ontology_enrichment_celltype=CL:0000393!4.99e-17!39;CL:0000211!4.99e-17!39;CL:0000540!1.16e-15!33;CL:0000047!1.16e-15!33;CL:0000031!1.16e-15!33;CL:0000404!1.16e-15!33;CL:0000055!7.52e-14!50;CL:0002319!4.05e-13!43;CL:0000117!4.42e-13!23;CL:0000337!4.42e-13!23;CL:0000221!1.79e-12!44;CL:0000133!1.79e-12!44;CL:0002321!2.09e-09!70;CL:0000220!2.09e-09!70|ontology_enrichment_celltype_v019_2=CL:0000393,4.99e-17,39;CL:0000211,4.99e-17,39;CL:0000540,1.16e-15,33;CL:0000047,1.16e-15,33;CL:0000031,1.16e-15,33;CL:0000404,1.16e-15,33;CL:0002319,4.05e-13,43;CL:0000117,4.42e-13,23;CL:0000337,4.42e-13,23;CL:0000221,1.79e-12,44;CL:0000133,1.79e-12,44;CL:0002321,2.08e-09,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!4.13e-23!73;UBERON:0005743!4.13e-23!73;UBERON:0000073!2.15e-21!75;UBERON:0001016!2.15e-21!75;UBERON:0002020!3.27e-18!34;UBERON:0003080!1.24e-16!40;UBERON:0002780!2.41e-16!39;UBERON:0001890!2.41e-16!39;UBERON:0006240!2.41e-16!39;UBERON:0001049!7.22e-16!52;UBERON:0005068!7.22e-16!52;UBERON:0006241!7.22e-16!52;UBERON:0007135!7.22e-16!52;UBERON:0002791!1.70e-15!29;UBERON:0003528!1.70e-15!29;UBERON:0001893!1.70e-15!29;UBERON:0004121!4.23e-15!102;UBERON:0000924!4.23e-15!102;UBERON:0006601!4.23e-15!102;UBERON:0000955!4.48e-15!50;UBERON:0006238!4.48e-15!50;UBERON:0002616!6.48e-15!49;UBERON:0003056!2.65e-14!49;UBERON:0000956!3.19e-12!21;UBERON:0001869!3.19e-12!21;UBERON:0000203!3.19e-12!21;UBERON:0000033!4.38e-12!63;UBERON:0002346!6.86e-12!71;UBERON:0003075!6.86e-12!71;UBERON:0007284!6.86e-12!71;UBERON:0002619!1.38e-09!17;UBERON:0000153!9.69e-08!94;UBERON:0007811!1.24e-07!86;UBERON:0002021!2.17e-07!10;UBERON:0000411!2.17e-07!10;UBERON:0001950!2.17e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.13e-23,73;UBERON:0001016,2.15e-21,75;UBERON:0002020,3.27e-18,34;UBERON:0004121,3.92e-18,95;UBERON:0000924,3.92e-18,95;UBERON:0006601,3.92e-18,95;UBERON:0000073,1.39e-17,54;UBERON:0003080,1.24e-16,40;UBERON:0002780,2.41e-16,39;UBERON:0001890,2.41e-16,39;UBERON:0006240,2.41e-16,39;UBERON:0001049,7.22e-16,52;UBERON:0005068,7.22e-16,52;UBERON:0006241,7.22e-16,52;UBERON:0007135,7.22e-16,52;UBERON:0003528,1.70e-15,29;UBERON:0002791,1.70e-15,29;UBERON:0001893,1.70e-15,29;UBERON:0002346,2.97e-15,64;UBERON:0003075,2.97e-15,64;UBERON:0007284,2.97e-15,64;UBERON:0003056,2.65e-14,49;UBERON:0000955,1.13e-13,47;UBERON:0006238,1.13e-13,47;UBERON:0002616,1.63e-13,46;UBERON:0010371,2.37e-13,73;UBERON:0000956,3.19e-12,21;UBERON:0001869,3.19e-12,21;UBERON:0000203,3.19e-12,21;UBERON:0002619,1.38e-09,17;UBERON:0010314,3.24e-09,92;UBERON:0002021,2.17e-07,10;UBERON:0000411,2.17e-07,10;UBERON:0001950,2.17e-07,10|phase1_expression=13.7728008510123,6.97950815278722,10.0099832665698,16.6355316218757,24.543890767371,20.4812711732506,19.3898491694286,4.64843964389675,268.765670587532,334.244143587807,8.38968044304974,9.4131147614497,22.9408978107816,25.7890187136042,2.6648780945253,2.22722794128809,0,4.10100814965709,4.79900517620086,2.54633791078818,42.0964286247795,2.08510997521859,1.82839852397255,2.71987118748791,7.11168771308227,5.16808767703518,5.59990595006797,4.95583835177545,3.99049180858385,2.26827116783938,2.43903561720835,2.54012269383853,1.23012957516914,15.8481681015439,7.51014211353314,5.81821258754723,18.3752420636132,3.34825304589526,2.3440060335714,1.0470474879476,4.1176204162171,5.46436387966757,2.42755176515577,34.9993153972105,36.3943183078057,38.3612712017914,21.1245662973971,38.590452679339,24.8245386489953,26.4424662741025,21.2779360870551,27.3129872293446,9.06026072711776,50.7753499407941,29.5762543245368,77.43509024682,156.160724766622,128.402350977083,491.426683427963,551.208600401458,476.641215436647,37.2728985276045,20.4537803105562,66.1426292201828,87.0202399058937,64.6536904600951,59.0212217721257,44.9535417226219,470.025012594329,584.170695161225,554.837248044946,139.112029404652,133.404598734775,382.661256747516,275.459883706411,484.428300543481,112.318198619376,141.732945274558,117.201784874514,585.3113449466,518.64345158206,453.715545754938,30.4309468911505,42.207195752376,63.4112728273762,264.28184116988,198.608494714749,396.285221824589,4.24066682665831,5.89458168832927,164.06330060515,5.16254326188832,19.039197343817,1.61910957491345,2.59910566979068,0.448026887097336,10.5333315098814,25.3941180641306,22.6013824004496,25.0871097902342,9.01397886570755,87.2620046417361,152.883143823987,184.877342819866,20.9996309780878,19.0019899106324,13.6491600153991,15.5290076417922,12.4290184150642,5.04703272820404,19.7773272513395,10.9607572192371,12.2226213545711,6.33035090321015,9.52468527799209,5.40366342717605,42.2703394825779,26.7508810301837,3.5384422077995,12.7795811458453,6.8460870722722,8.727754556434,5.59175283654366,2.63502717310392,3.560594015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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=13803 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=O35709 | |||
|association_with_transcript=0bp_to_ENSMUST00000041623,NM_007930,uc007rod.2_5end | |||
|cluster_id=chr13:98011051..98011071,+ | |||
|description=CAGE_peak_1_at_Enc1_5end | |||
|id=chr13:98011051..98011071,+ | |||
|ontology_enrichment_celltype=CL:0000393!4.99e-17!39;CL:0000211!4.99e-17!39;CL:0000540!1.16e-15!33;CL:0000047!1.16e-15!33;CL:0000031!1.16e-15!33;CL:0000404!1.16e-15!33;CL:0000055!7.52e-14!50;CL:0002319!4.05e-13!43;CL:0000117!4.42e-13!23;CL:0000337!4.42e-13!23;CL:0000221!1.79e-12!44;CL:0000133!1.79e-12!44;CL:0002321!2.09e-09!70;CL:0000220!2.09e-09!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,4.99e-17,39;CL:0000211,4.99e-17,39;CL:0000540,1.16e-15,33;CL:0000047,1.16e-15,33;CL:0000031,1.16e-15,33;CL:0000404,1.16e-15,33;CL:0002319,4.05e-13,43;CL:0000117,4.42e-13,23;CL:0000337,4.42e-13,23;CL:0000221,1.79e-12,44;CL:0000133,1.79e-12,44;CL:0002321,2.08e-09,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.13e-23!73;UBERON:0005743!4.13e-23!73;UBERON:0000073!2.15e-21!75;UBERON:0001016!2.15e-21!75;UBERON:0002020!3.27e-18!34;UBERON:0003080!1.24e-16!40;UBERON:0002780!2.41e-16!39;UBERON:0001890!2.41e-16!39;UBERON:0006240!2.41e-16!39;UBERON:0001049!7.22e-16!52;UBERON:0005068!7.22e-16!52;UBERON:0006241!7.22e-16!52;UBERON:0007135!7.22e-16!52;UBERON:0002791!1.70e-15!29;UBERON:0003528!1.70e-15!29;UBERON:0001893!1.70e-15!29;UBERON:0004121!4.23e-15!102;UBERON:0000924!4.23e-15!102;UBERON:0006601!4.23e-15!102;UBERON:0000955!4.48e-15!50;UBERON:0006238!4.48e-15!50;UBERON:0002616!6.48e-15!49;UBERON:0003056!2.65e-14!49;UBERON:0000956!3.19e-12!21;UBERON:0001869!3.19e-12!21;UBERON:0000203!3.19e-12!21;UBERON:0000033!4.38e-12!63;UBERON:0002346!6.86e-12!71;UBERON:0003075!6.86e-12!71;UBERON:0007284!6.86e-12!71;UBERON:0002619!1.38e-09!17;UBERON:0000153!9.69e-08!94;UBERON:0007811!1.24e-07!86;UBERON:0002021!2.17e-07!10;UBERON:0000411!2.17e-07!10;UBERON:0001950!2.17e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.13e-23,73;UBERON:0001016,2.15e-21,75;UBERON:0002020,3.27e-18,34;UBERON:0004121,3.92e-18,95;UBERON:0000924,3.92e-18,95;UBERON:0006601,3.92e-18,95;UBERON:0000073,1.39e-17,54;UBERON:0003080,1.24e-16,40;UBERON:0002780,2.41e-16,39;UBERON:0001890,2.41e-16,39;UBERON:0006240,2.41e-16,39;UBERON:0001049,7.22e-16,52;UBERON:0005068,7.22e-16,52;UBERON:0006241,7.22e-16,52;UBERON:0007135,7.22e-16,52;UBERON:0003528,1.70e-15,29;UBERON:0002791,1.70e-15,29;UBERON:0001893,1.70e-15,29;UBERON:0002346,2.97e-15,64;UBERON:0003075,2.97e-15,64;UBERON:0007284,2.97e-15,64;UBERON:0003056,2.65e-14,49;UBERON:0000955,1.13e-13,47;UBERON:0006238,1.13e-13,47;UBERON:0002616,1.63e-13,46;UBERON:0010371,2.37e-13,73;UBERON:0000956,3.19e-12,21;UBERON:0001869,3.19e-12,21;UBERON:0000203,3.19e-12,21;UBERON:0002619,1.38e-09,17;UBERON:0010314,3.24e-09,92;UBERON:0002021,2.17e-07,10;UBERON:0000411,2.17e-07,10;UBERON:0001950,2.17e-07,10 | |||
|phase1_expression=13.7728008510123,6.97950815278722,10.0099832665698,16.6355316218757,24.543890767371,20.4812711732506,19.3898491694286,4.64843964389675,268.765670587532,334.244143587807,8.38968044304974,9.4131147614497,22.9408978107816,25.7890187136042,2.6648780945253,2.22722794128809,0,4.10100814965709,4.79900517620086,2.54633791078818,42.0964286247795,2.08510997521859,1.82839852397255,2.71987118748791,7.11168771308227,5.16808767703518,5.59990595006797,4.95583835177545,3.99049180858385,2.26827116783938,2.43903561720835,2.54012269383853,1.23012957516914,15.8481681015439,7.51014211353314,5.81821258754723,18.3752420636132,3.34825304589526,2.3440060335714,1.0470474879476,4.1176204162171,5.46436387966757,2.42755176515577,34.9993153972105,36.3943183078057,38.3612712017914,21.1245662973971,38.590452679339,24.8245386489953,26.4424662741025,21.2779360870551,27.3129872293446,9.06026072711776,50.7753499407941,29.5762543245368,77.43509024682,156.160724766622,128.402350977083,491.426683427963,551.208600401458,476.641215436647,37.2728985276045,20.4537803105562,66.1426292201828,87.0202399058937,64.6536904600951,59.0212217721257,44.9535417226219,470.025012594329,584.170695161225,554.837248044946,139.112029404652,133.404598734775,382.661256747516,275.459883706411,484.428300543481,112.318198619376,141.732945274558,117.201784874514,585.3113449466,518.64345158206,453.715545754938,30.4309468911505,42.207195752376,63.4112728273762,264.28184116988,198.608494714749,396.285221824589,4.24066682665831,5.89458168832927,164.06330060515,5.16254326188832,19.039197343817,1.61910957491345,2.59910566979068,0.448026887097336,10.5333315098814,25.3941180641306,22.6013824004496,25.0871097902342,9.01397886570755,87.2620046417361,152.883143823987,184.877342819866,20.9996309780878,19.0019899106324,13.6491600153991,15.5290076417922,12.4290184150642,5.04703272820404,19.7773272513395,10.9607572192371,12.2226213545711,6.33035090321015,9.52468527799209,5.40366342717605,42.2703394825779,26.7508810301837,3.5384422077995,12.7795811458453,6.8460870722722,8.727754556434,5.59175283654366,2.63502717310392,3.56059401582874,9.96282515313506,1.67741174308288,1.79970819298022,1.27070227073065,60.9647902377628,153.26270194424,398.32429619778,417.526017101848,329.361509041466,79.1672449771924,108.052681203127,16.2942982160506,7.2156042953854,5.05445516867349,15.7831391914855,19.9084277732937,26.6686441142829,33.3114940139896,24.866294942893,18.9141467640691,31.0035203089336,30.3593587573521,7.24369438069244,22.6346392579484,31.2025032276902,35.5421270811177,41.4279934288116,43.9314653776445,23.6811473235073,18.7261744131229,53.7392520409932,0.702213187313235,0.51469581422943,1.70498099637356,26.0978473394732,29.0812314376559,26.8292471576912,26.2786656499583,18.6926020160034,16.9693824176116,17.9051137457814,15.5598572811779,12.4938916332871,12.8356682932515,8.70087559619205,11.4307021459657,11.5497990066013,8.78200461164202,8.18659154438268,358.334072353273,224.229150374461,3.96502539580558,8.19796756656987,23.4617075588757,24.1526138734856,24.6136851125198,20.1683524623343,20.2364019898832,19.9736907418187,11.8632265386128,9.22314146454461,11.8127548136127,7.95825888164603,11.307917052909,8.08937467788799,6.48414149624083,7.96565093017469,43.6236172192088,39.187239825137,45.0830942692322,38.6937522906097,32.3900653569935,22.5837340046826,8.09427675190493,2.36176236767363,2.66897837330337,2.71473760627961,1.48226313543574,9.17648081438517,11.2038627214526,5.17182858485164,6.28866376304359,5.30589751455317,11.7127891819453,14.6725030099913,35.0212089834076,22.2394744682346,35.9420516318386,21.5841749647732,15.2898459826135,9.09283960609602,2.33216637578486,4.3419916922703,9.42241269849684,22.9284608242287,36.6671196994558,45.6614280735256,37.7851299744488,23.4508760418542,18.5674039891091,16.1960927721973,34.8373668474682,35.2128856541552,33.4855014180723,10.1595255123758,8.28887912956299,15.1881511510587,25.6345182696763,2.71952841909355,5.90117127622843,9.93372286697037,21.0321272884007,14.8858841972098,51.8034427390294,4.03953483526997,75.0909562210691,86.6774012338537,55.3638132173293,86.9846424547289,68.6219916173774,65.956831673798,79.3428975282793,101.412782695225,96.4502178189517,46.2702695647402,30.9429385754026,15.1355763117167,10.2618784392753,17.8167732810338,19.9117707509944,32.7753858809225,18.1394134178851,15.0884063804718,17.7181135728464,18.1386737286917,18.3484088149437,27.2650297108129,19.6073558111597,13.5895805912401,12.6502330289999,13.4076206222643,29.6182457005796,24.4883087882582,23.5432804484613,41.1527107260657,67.7439692513485,53.3322764630191,50.8456473660554,39.2759784357833,10.7948985709307,21.183207086382,2.20528398054962,30.3390705412323,18.5684090700291,29.1914556652274,36.4085649209566,44.1539020314215,9.61886760878507,20.7676338251771,5.98048082792484,14.4470807574256,18.7046472643409,6.02779062415011,4.64760374251486,4.57556346413045,0.169978429993855,1.6794174278839,0.967399816630967,12.4107180341965,19.770999598821,24.19501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| |||
|short_description=p1@Enc1 | |||
}} |
Latest revision as of 14:19, 25 September 2015
Short description: | p1@Enc1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Enc1_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 0bp_to_ENSMUST00000041623, NM_007930, uc007rod.2_5end |
EntrezGene: | Enc1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 4.99e-17 | 39 |
electrically active cell | 4.99e-17 | 39 |
neuron | 1.16e-15 | 33 |
neuronal stem cell | 1.16e-15 | 33 |
neuroblast | 1.16e-15 | 33 |
electrically signaling cell | 1.16e-15 | 33 |
neural cell | 4.05e-13 | 43 |
CNS neuron (sensu Vertebrata) | 4.42e-13 | 23 |
neuroblast (sensu Vertebrata) | 4.42e-13 | 23 |
ectodermal cell | 1.79e-12 | 44 |
neurectodermal cell | 1.79e-12 | 44 |
embryonic cell | 2.08e-09 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 4.13e-23 | 73 |
nervous system | 2.15e-21 | 75 |
gray matter | 3.27e-18 | 34 |
ectoderm-derived structure | 3.92e-18 | 95 |
ectoderm | 3.92e-18 | 95 |
presumptive ectoderm | 3.92e-18 | 95 |
regional part of nervous system | 1.39e-17 | 54 |
anterior neural tube | 1.24e-16 | 40 |
regional part of forebrain | 2.41e-16 | 39 |
forebrain | 2.41e-16 | 39 |
future forebrain | 2.41e-16 | 39 |
neural tube | 7.22e-16 | 52 |
neural rod | 7.22e-16 | 52 |
future spinal cord | 7.22e-16 | 52 |
neural keel | 7.22e-16 | 52 |
brain grey matter | 1.70e-15 | 29 |
regional part of telencephalon | 1.70e-15 | 29 |
telencephalon | 1.70e-15 | 29 |
neurectoderm | 2.97e-15 | 64 |
neural plate | 2.97e-15 | 64 |
presumptive neural plate | 2.97e-15 | 64 |
pre-chordal neural plate | 2.65e-14 | 49 |
brain | 1.13e-13 | 47 |
future brain | 1.13e-13 | 47 |
regional part of brain | 1.63e-13 | 46 |
ecto-epithelium | 2.37e-13 | 73 |
cerebral cortex | 3.19e-12 | 21 |
cerebral hemisphere | 3.19e-12 | 21 |
pallium | 3.19e-12 | 21 |
regional part of cerebral cortex | 1.38e-09 | 17 |
structure with developmental contribution from neural crest | 3.24e-09 | 92 |
occipital lobe | 2.17e-07 | 10 |
visual cortex | 2.17e-07 | 10 |
neocortex | 2.17e-07 | 10 |