FFCP PHASE1:Mm9::chr2:124436158..124436172,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=214968 | |EntrezGene=214968 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=20 | |||
|TSSclassifier=NA | |||
|UniProt=Q76KF0,A2AW76,A2AW75,A2AW74,A2AW73 | |UniProt=Q76KF0,A2AW76,A2AW75,A2AW74,A2AW73 | ||
|association_with_transcript=126bp_to_ENSMUST00000051419,ENSMUST00000076335,ENSMUST00000077847,ENSMUST00000078621,NM_172537,NM_199238,NM_199239,NM_199240,NM_199241,uc008mbn.1,uc008mbo.1,uc008mbp.1,uc008mbq.1,uc008mbr.2,uc008mbs.2,uc008mbt.2_5end | |association_with_transcript=126bp_to_ENSMUST00000051419,ENSMUST00000076335,ENSMUST00000077847,ENSMUST00000078621,NM_172537,NM_199238,NM_199239,NM_199240,NM_199241,uc008mbn.1,uc008mbo.1,uc008mbp.1,uc008mbq.1,uc008mbr.2,uc008mbs.2,uc008mbt.2_5end | ||
|cluster_id=chr2:124436158..124436172,+ | |||
|description=CAGE_peak_7_at_Sema6d_5end | |description=CAGE_peak_7_at_Sema6d_5end | ||
|id=chr2:124436158..124436172,+ | |id=chr2:124436158..124436172,+ | ||
|ontology_enrichment_celltype=CL:0000117!1.60e-09!23;CL:0000337!1.60e-09!23;CL:0000540!4.06e-07!33;CL:0000047!4.06e-07!33;CL:0000031!4.06e-07!33;CL:0000404!4.06e-07!33 | |ontology_enrichment_celltype=CL:0000117!1.60e-09!23;CL:0000337!1.60e-09!23;CL:0000540!4.06e-07!33;CL:0000047!4.06e-07!33;CL:0000031!4.06e-07!33;CL:0000404!4.06e-07!33 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,8.60e-18,23;CL:0000337,8.60e-18,23;CL:0000540,1.02e-10,33;CL:0000047,1.02e-10,33;CL:0000031,1.02e-10,33;CL:0000404,1.02e-10,33;CL:0000393,2.32e-10,39;CL:0000211,2.32e-10,39;CL:0002319,3.80e-09,43;CL:0000221,8.25e-09,44;CL:0000133,8.25e-09,44;CL:0002321,3.03e-08,70 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.18e-10!75;UBERON:0001016!2.18e-10!75;UBERON:0001017!5.08e-10!73;UBERON:0005743!5.08e-10!73;UBERON:0001049!2.27e-09!52;UBERON:0005068!2.27e-09!52;UBERON:0006241!2.27e-09!52;UBERON:0007135!2.27e-09!52;UBERON:0000955!8.18e-09!50;UBERON:0006238!8.18e-09!50;UBERON:0002616!2.31e-08!49;UBERON:0000033!1.31e-07!63;UBERON:0002020!2.11e-07!34;UBERON:0004121!6.42e-07!102;UBERON:0000924!6.42e-07!102;UBERON:0006601!6.42e-07!102 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.03e-16,54;UBERON:0001017,1.85e-15,73;UBERON:0001016,9.00e-15,75;UBERON:0001049,1.54e-14,52;UBERON:0005068,1.54e-14,52;UBERON:0006241,1.54e-14,52;UBERON:0007135,1.54e-14,52;UBERON:0000955,2.61e-11,47;UBERON:0006238,2.61e-11,47;UBERON:0002020,2.65e-11,34;UBERON:0002616,1.72e-10,46;UBERON:0002346,2.68e-10,64;UBERON:0003075,2.68e-10,64;UBERON:0007284,2.68e-10,64;UBERON:0004121,1.42e-09,95;UBERON:0000924,1.42e-09,95;UBERON:0006601,1.42e-09,95;UBERON:0003076,6.76e-09,12;UBERON:0003057,6.76e-09,12;UBERON:0003528,2.85e-08,29;UBERON:0002791,2.85e-08,29;UBERON:0001893,2.85e-08,29;UBERON:0010371,4.35e-08,73;UBERON:0010314,5.56e-08,92;UBERON:0003080,6.65e-08,40;UBERON:0002420,7.83e-08,8;UBERON:0007245,7.83e-08,8;UBERON:0010009,7.83e-08,8;UBERON:0010011,7.83e-08,8;UBERON:0000454,7.83e-08,8;UBERON:0002950,2.64e-07,4;UBERON:0001891,2.64e-07,4;UBERON:0009616,2.64e-07,4;UBERON:0010286,2.64e-07,4;UBERON:0002780,4.29e-07,39;UBERON:0001890,4.29e-07,39;UBERON:0006240,4.29e-07,39;UBERON:0011216,5.69e-07,194 | |||
|phase1_expression=0.320297694209588,0.697950815278722,2.72999543633722,3.0246421130683,2.50447864973174,1.17515490338323,0.700837921786577,0,0,0,0,0,0,0,0,0,0.699561878128147,0,0.137114433605739,0.42438965179803,0.425216450755349,0,0,0.159992422793407,0.91763712426868,0,1.7230479846363,1.29282739611533,0.570070258369122,1.51218077855958,0.665191531965914,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0.777719596297134,0,2.87505128729943,0,0,0,0.257259436035947,1.71920063963254,1.03134418455488,0.809265843438391,1.05798195854407,0,0,0,0,0,0,0,1.53687322128622,1.97010263386108,2.16009501330705,1.47227472945967,1.99955689082663,2.42955395046775,1.34739879136449,1.24599112323707,0,8.8092704799511,5.2351808614927,5.06901559745603,1.05509030184155,1.09785172322892,1.04182674111352,5.862842979029,3.37657566019008,4.73674568108111,0.883885756421003,2.56269025438385,1.3047961207771,0.681535739998656,0.831287161174641,0.869593466105033,0,0,1.07940638327563,0,0,0.421333260395256,0,0,0,0.704217098883403,0,0,0,0,0,0,0.34255163915718,0.258937883647172,0.445326417194474,0.173485326766136,0.608930956624282,0,0,0.23517741427141,0.125666591329675,0,0.144599356919912,0,1.13236794963186,0.220841518460394,0.484875253135222,0,2.34224637609238,1.46612694769419,0.255457055208591,0,0,0,3.14560342750128,2.74500361691176,0.376963056338593,1.56441888173049,1.53429274398198,3.32460871295296,2.10913641988085,0.305518091550949,0.124406970610093,0.252722758433675,0,0.130120442962704,0.459804208866946,0.540186389416048,0.30140963567143,0.408218994907967,0.12811372028485,0.749613796477831,0.776110112217047,0,0.189106080167819,0.175951124163949,0.43839146485515,0,0,0,0.199034266818493,0,0,0,0.621377317606506,0.938104239924385,0.720248245844059,1.42046841351126,1.18058539048442,0.771335564436891,0.232533944750408,1.60964040839772,0.700592054203017,0.658239399653922,0.820837320395476,0.648550476366846,0.584799949701329,0.439100230582101,0.939444931322602,2.10289948564127,1.9551876352064,1.98251269790279,0.793351699990633,0.426576501070468,0.232236671860439,0.38660238396628,1.81515172161008,0.667134131534611,1.14135375667535,1.42358718463353,1.64698954724011,0.754005626400808,1.79060824837036,1.75467678407208,2.69645822596266,0.432276099749388,0.995706366271836,0.189667900953082,0.228497025219458,0,0,0.193952487167626,0.210407459670956,0.126473074248515,0,0.156998727841375,0.493588655687202,0,0.166845105716094,0.196558995113203,0,0.405720242777006,0.241177159752417,0,0,0.324270453550071,0,0,0,0,0.252578877947112,0,0,0.184753190166605,0.189491411770485,0.488894929326078,0.848725428875941,0.704070744865506,0.502518772325447,0.476087281772027,1.17080188714679,0.630540576424764,0.8858587585951,0.797273843287435,0.491589944147214,0,0.433947175744535,1.50791283939272,0,0.491764273019036,0.275936746304732,3.37156238974363,3.6335622843583,0,0.252470927204373,0.315508219416257,0,0.861693590931196,0,0.668396022247182,0.849229592366497,0.404810701674894,0,0.790575555893047,1.92792789853084,0.425820255624806,0.178065603667255,0.162886959353576,0,0,0.485561272309963,0.604647113929502,0,0.590603785761546,0.307435147943927,0.258428293168221,0.363533729477506,0.356497378384721,0.316036757935816,0,0,0.680879211507576,0.18006109403131,0.129358683782755,0.643011105094777,0,0.356737635204141,0.329098041204242,0.913394847343798,0.938686832254841,0.42366414172764,0.220528398054962,0.16488625294148,0.322928853391811,0.180938774784468,0.238744688006273,0,0.582961673259701,5.93360966433631,0.854354403989263,0,0.185194527369712,0,0.27338845544205,0,0.509935289981566,0.839708713941948,0.967399816630967,0,0.158167996790568,0.203319467126849,0.108005340821801,0.209088296014469,0.218362563746178,0.134864346384821,0.247960367176008,0.26175594198403,1.8146096260851,0,0,0.747582730219894,0.165458490457098,1.16670713006429,0.258319646955462,0.506868376472335,0.58678619322877,0.39061315453185,0.838874755405687,0.483168241652012,0,0,0.810900861160657,0.410843828659309,0.649604114888975,0.537080087002444,0.39736270956253,0.240390899039938,0.147689527174577,0.100966449948148,0.0762068066549998,0,0.194915761479505,0.0962118416403295,0,0.906921534460845,0,0.0897138566094757,0,0.386379188064381,0.375364950902364,0.183151624267265,0,0.501572104035363,0,0.460325236507177,0.572895513439397,0.859265911718438,0.685082519770642,0,0.675022500231806,0,1.35942722695261,0.51776031175182,0.31136204275253,0,0.512200817262403,0.729320151204882,0.419226325255965,0.551530525350042,0.44449345560323,1.44224540067226,0.962757628775446,1.01078884705519,1.01391719956096,0.754505365544305,0.749132059759059,0.768301828858431,0.631790158511746,0,0.579421629724277,0.77163688185482,0.412085900803307,0.441596760403192,0.685738504770831,0.532427418478012,0,1.30811774969096,0.752875043322645,0.846146078916765,0.73171189149109,1.05227884575137,0.679020569229309,0,1.18635018124174,0.886540341380071,1.22769312950907,0.929621047115796,0.578719832943424,0.999242311751784,0.701794825336225,1.07435527024149,0.956441660344217,0.441182838239031,0.463735671240843 | |phase1_expression=0.320297694209588,0.697950815278722,2.72999543633722,3.0246421130683,2.50447864973174,1.17515490338323,0.700837921786577,0,0,0,0,0,0,0,0,0,0.699561878128147,0,0.137114433605739,0.42438965179803,0.425216450755349,0,0,0.159992422793407,0.91763712426868,0,1.7230479846363,1.29282739611533,0.570070258369122,1.51218077855958,0.665191531965914,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0.777719596297134,0,2.87505128729943,0,0,0,0.257259436035947,1.71920063963254,1.03134418455488,0.809265843438391,1.05798195854407,0,0,0,0,0,0,0,1.53687322128622,1.97010263386108,2.16009501330705,1.47227472945967,1.99955689082663,2.42955395046775,1.34739879136449,1.24599112323707,0,8.8092704799511,5.2351808614927,5.06901559745603,1.05509030184155,1.09785172322892,1.04182674111352,5.862842979029,3.37657566019008,4.73674568108111,0.883885756421003,2.56269025438385,1.3047961207771,0.681535739998656,0.831287161174641,0.869593466105033,0,0,1.07940638327563,0,0,0.421333260395256,0,0,0,0.704217098883403,0,0,0,0,0,0,0.34255163915718,0.258937883647172,0.445326417194474,0.173485326766136,0.608930956624282,0,0,0.23517741427141,0.125666591329675,0,0.144599356919912,0,1.13236794963186,0.220841518460394,0.484875253135222,0,2.34224637609238,1.46612694769419,0.255457055208591,0,0,0,3.14560342750128,2.74500361691176,0.376963056338593,1.56441888173049,1.53429274398198,3.32460871295296,2.10913641988085,0.305518091550949,0.124406970610093,0.252722758433675,0,0.130120442962704,0.459804208866946,0.540186389416048,0.30140963567143,0.408218994907967,0.12811372028485,0.749613796477831,0.776110112217047,0,0.189106080167819,0.175951124163949,0.43839146485515,0,0,0,0.199034266818493,0,0,0,0.621377317606506,0.938104239924385,0.720248245844059,1.42046841351126,1.18058539048442,0.771335564436891,0.232533944750408,1.60964040839772,0.700592054203017,0.658239399653922,0.820837320395476,0.648550476366846,0.584799949701329,0.439100230582101,0.939444931322602,2.10289948564127,1.9551876352064,1.98251269790279,0.793351699990633,0.426576501070468,0.232236671860439,0.38660238396628,1.81515172161008,0.667134131534611,1.14135375667535,1.42358718463353,1.64698954724011,0.754005626400808,1.79060824837036,1.75467678407208,2.69645822596266,0.432276099749388,0.995706366271836,0.189667900953082,0.228497025219458,0,0,0.193952487167626,0.210407459670956,0.126473074248515,0,0.156998727841375,0.493588655687202,0,0.166845105716094,0.196558995113203,0,0.405720242777006,0.241177159752417,0,0,0.324270453550071,0,0,0,0,0.252578877947112,0,0,0.184753190166605,0.189491411770485,0.488894929326078,0.848725428875941,0.704070744865506,0.502518772325447,0.476087281772027,1.17080188714679,0.630540576424764,0.8858587585951,0.797273843287435,0.491589944147214,0,0.433947175744535,1.50791283939272,0,0.491764273019036,0.275936746304732,3.37156238974363,3.6335622843583,0,0.252470927204373,0.315508219416257,0,0.861693590931196,0,0.668396022247182,0.849229592366497,0.404810701674894,0,0.790575555893047,1.92792789853084,0.425820255624806,0.178065603667255,0.162886959353576,0,0,0.485561272309963,0.604647113929502,0,0.590603785761546,0.307435147943927,0.258428293168221,0.363533729477506,0.356497378384721,0.316036757935816,0,0,0.680879211507576,0.18006109403131,0.129358683782755,0.643011105094777,0,0.356737635204141,0.329098041204242,0.913394847343798,0.938686832254841,0.42366414172764,0.220528398054962,0.16488625294148,0.322928853391811,0.180938774784468,0.238744688006273,0,0.582961673259701,5.93360966433631,0.854354403989263,0,0.185194527369712,0,0.27338845544205,0,0.509935289981566,0.839708713941948,0.967399816630967,0,0.158167996790568,0.203319467126849,0.108005340821801,0.209088296014469,0.218362563746178,0.134864346384821,0.247960367176008,0.26175594198403,1.8146096260851,0,0,0.747582730219894,0.165458490457098,1.16670713006429,0.258319646955462,0.506868376472335,0.58678619322877,0.39061315453185,0.838874755405687,0.483168241652012,0,0,0.810900861160657,0.410843828659309,0.649604114888975,0.537080087002444,0.39736270956253,0.240390899039938,0.147689527174577,0.100966449948148,0.0762068066549998,0,0.194915761479505,0.0962118416403295,0,0.906921534460845,0,0.0897138566094757,0,0.386379188064381,0.375364950902364,0.183151624267265,0,0.501572104035363,0,0.460325236507177,0.572895513439397,0.859265911718438,0.685082519770642,0,0.675022500231806,0,1.35942722695261,0.51776031175182,0.31136204275253,0,0.512200817262403,0.729320151204882,0.419226325255965,0.551530525350042,0.44449345560323,1.44224540067226,0.962757628775446,1.01078884705519,1.01391719956096,0.754505365544305,0.749132059759059,0.768301828858431,0.631790158511746,0,0.579421629724277,0.77163688185482,0.412085900803307,0.441596760403192,0.685738504770831,0.532427418478012,0,1.30811774969096,0.752875043322645,0.846146078916765,0.73171189149109,1.05227884575137,0.679020569229309,0,1.18635018124174,0.886540341380071,1.22769312950907,0.929621047115796,0.578719832943424,0.999242311751784,0.701794825336225,1.07435527024149,0.956441660344217,0.441182838239031,0.463735671240843 | ||
|short_description=p7@Sema6d | |short_description=p7@Sema6d | ||
}} | }} |
Latest revision as of 15:36, 25 September 2015
Short description: | p7@Sema6d |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_Sema6d_5end |
Coexpression cluster: | MCL_coexpression_mm9:20 |
Association with transcript: | 126bp_to_ENSMUST00000051419, ENSMUST00000076335, ENSMUST00000077847, ENSMUST00000078621, NM_172537, NM_199238, NM_199239, NM_199240, NM_199241, uc008mbn.1, uc008mbo.1, uc008mbp.1, uc008mbq.1, uc008mbr.2, uc008mbs.2, uc008mbt.2_5end |
EntrezGene: | Sema6d |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 8.60e-18 | 23 |
neuroblast (sensu Vertebrata) | 8.60e-18 | 23 |
neuron | 1.02e-10 | 33 |
neuronal stem cell | 1.02e-10 | 33 |
neuroblast | 1.02e-10 | 33 |
electrically signaling cell | 1.02e-10 | 33 |
electrically responsive cell | 2.32e-10 | 39 |
electrically active cell | 2.32e-10 | 39 |
neural cell | 3.80e-09 | 43 |
ectodermal cell | 8.25e-09 | 44 |
neurectodermal cell | 8.25e-09 | 44 |
embryonic cell | 3.03e-08 | 70 |