FFCP PHASE1:Mm9::chr16:91011374..91011415,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=104015 | |EntrezGene=104015 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=F7BQW7 | |UniProt=F7BQW7 | ||
|association_with_transcript=-16bp_to_ENSMUST00000118390_5end | |association_with_transcript=-16bp_to_ENSMUST00000118390_5end | ||
|cluster_id=chr16:91011374..91011415,- | |||
|description=CAGE_peak_2_at_Synj1_5end | |description=CAGE_peak_2_at_Synj1_5end | ||
|id=chr16:91011374..91011415,- | |id=chr16:91011374..91011415,- | ||
|ontology_enrichment_celltype=CL:0000117!5.73e-11!23;CL:0000337!5.73e-11!23;CL:0000540!4.41e-07!33;CL:0000047!4.41e-07!33;CL:0000031!4.41e-07!33;CL:0000404!4.41e-07!33 | |ontology_enrichment_celltype=CL:0000117!5.73e-11!23;CL:0000337!5.73e-11!23;CL:0000540!4.41e-07!33;CL:0000047!4.41e-07!33;CL:0000031!4.41e-07!33;CL:0000404!4.41e-07!33 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.44e-11,23;CL:0000337,4.44e-11,23;CL:0000540,4.38e-07,33;CL:0000047,4.38e-07,33;CL:0000031,4.38e-07,33;CL:0000404,4.38e-07,33 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!1.22e-16!63;UBERON:0001049!6.18e-16!52;UBERON:0005068!6.18e-16!52;UBERON:0006241!6.18e-16!52;UBERON:0007135!6.18e-16!52;UBERON:0000955!3.10e-15!50;UBERON:0006238!3.10e-15!50;UBERON:0007811!5.22e-15!86;UBERON:0002616!1.11e-14!49;UBERON:0002020!1.58e-14!34;UBERON:0003056!4.67e-14!49;UBERON:0002346!4.91e-14!71;UBERON:0003075!4.91e-14!71;UBERON:0007284!4.91e-14!71;UBERON:0001017!1.20e-13!73;UBERON:0005743!1.20e-13!73;UBERON:0000073!4.53e-13!75;UBERON:0001016!4.53e-13!75;UBERON:0003080!1.74e-12!40;UBERON:0000153!2.33e-12!94;UBERON:0002791!4.33e-12!29;UBERON:0003528!4.33e-12!29;UBERON:0001893!4.33e-12!29;UBERON:0002780!6.26e-12!39;UBERON:0001890!6.26e-12!39;UBERON:0006240!6.26e-12!39;UBERON:0004121!2.11e-11!102;UBERON:0000924!2.11e-11!102;UBERON:0006601!2.11e-11!102;UBERON:0000956!5.51e-08!21;UBERON:0001869!5.51e-08!21;UBERON:0000203!5.51e-08!21;UBERON:0002021!9.72e-08!10;UBERON:0000411!9.72e-08!10;UBERON:0001950!9.72e-08!10;UBERON:0002619!4.04e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.66e-17,54;UBERON:0002346,1.26e-16,64;UBERON:0003075,1.26e-16,64;UBERON:0007284,1.26e-16,64;UBERON:0001049,4.72e-16,52;UBERON:0005068,4.72e-16,52;UBERON:0006241,4.72e-16,52;UBERON:0007135,4.72e-16,52;UBERON:0002020,9.21e-15,34;UBERON:0010371,4.14e-14,73;UBERON:0003056,4.23e-14,49;UBERON:0001017,7.86e-14,73;UBERON:0000955,1.60e-13,47;UBERON:0006238,1.60e-13,47;UBERON:0001016,3.03e-13,75;UBERON:0004121,3.04e-13,95;UBERON:0000924,3.04e-13,95;UBERON:0006601,3.04e-13,95;UBERON:0002616,5.53e-13,46;UBERON:0003080,1.66e-12,40;UBERON:0003528,2.72e-12,29;UBERON:0002791,2.72e-12,29;UBERON:0001893,2.72e-12,29;UBERON:0002780,6.02e-12,39;UBERON:0001890,6.02e-12,39;UBERON:0006240,6.02e-12,39;UBERON:0010314,6.62e-10,92;UBERON:0000956,3.92e-08,21;UBERON:0001869,3.92e-08,21;UBERON:0000203,3.92e-08,21;UBERON:0002021,8.22e-08,10;UBERON:0000411,8.22e-08,10;UBERON:0001950,8.22e-08,10;UBERON:0002619,2.92e-07,17 | |||
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| ||
|short_description=p2@Synj1 | |short_description=p2@Synj1 | ||
}} | }} |
Latest revision as of 20:12, 25 September 2015
Short description: | p2@Synj1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Synj1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -16bp_to_ENSMUST00000118390_5end |
EntrezGene: | Synj1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.44e-11 | 23 |
neuroblast (sensu Vertebrata) | 4.44e-11 | 23 |
neuron | 4.38e-07 | 33 |
neuronal stem cell | 4.38e-07 | 33 |
neuroblast | 4.38e-07 | 33 |
electrically signaling cell | 4.38e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 2.66e-17 | 54 |
neurectoderm | 1.26e-16 | 64 |
neural plate | 1.26e-16 | 64 |
presumptive neural plate | 1.26e-16 | 64 |
neural tube | 4.72e-16 | 52 |
neural rod | 4.72e-16 | 52 |
future spinal cord | 4.72e-16 | 52 |
neural keel | 4.72e-16 | 52 |
gray matter | 9.21e-15 | 34 |
ecto-epithelium | 4.14e-14 | 73 |
pre-chordal neural plate | 4.23e-14 | 49 |
central nervous system | 7.86e-14 | 73 |
brain | 1.60e-13 | 47 |
future brain | 1.60e-13 | 47 |
nervous system | 3.03e-13 | 75 |
ectoderm-derived structure | 3.04e-13 | 95 |
ectoderm | 3.04e-13 | 95 |
presumptive ectoderm | 3.04e-13 | 95 |
regional part of brain | 5.53e-13 | 46 |
anterior neural tube | 1.66e-12 | 40 |
brain grey matter | 2.72e-12 | 29 |
regional part of telencephalon | 2.72e-12 | 29 |
telencephalon | 2.72e-12 | 29 |
regional part of forebrain | 6.02e-12 | 39 |
forebrain | 6.02e-12 | 39 |
future forebrain | 6.02e-12 | 39 |
structure with developmental contribution from neural crest | 6.62e-10 | 92 |
cerebral cortex | 3.92e-08 | 21 |
cerebral hemisphere | 3.92e-08 | 21 |
pallium | 3.92e-08 | 21 |
occipital lobe | 8.22e-08 | 10 |
visual cortex | 8.22e-08 | 10 |
neocortex | 8.22e-08 | 10 |
regional part of cerebral cortex | 2.92e-07 | 17 |