FFCP PHASE1:Mm9::chr11:93905456..93905470,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr11:93905456..93905470,+
|short_description=p5@Spag9
|description=CAGE_peak_5_at_Spag9_5end
|association_with_transcript=24bp_to_ENSMUST00000132079_5end
|Ent...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=70834 | |EntrezGene=70834 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=Q5NC72 | |UniProt=Q5NC72 | ||
|association_with_transcript=24bp_to_ENSMUST00000132079_5end | |||
|cluster_id=chr11:93905456..93905470,+ | |||
|description=CAGE_peak_5_at_Spag9_5end | |||
|id=chr11:93905456..93905470,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.33e-12!33;CL:0000047!1.33e-12!33;CL:0000031!1.33e-12!33;CL:0000404!1.33e-12!33;CL:0000117!6.13e-11!23;CL:0000337!6.13e-11!23;CL:0000393!6.20e-09!39;CL:0000211!6.20e-09!39;CL:0000221!1.72e-07!44;CL:0000133!1.72e-07!44;CL:0002319!4.43e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,4.40e-14,33;CL:0000047,4.40e-14,33;CL:0000031,4.40e-14,33;CL:0000404,4.40e-14,33;CL:0000117,9.76e-13,23;CL:0000337,9.76e-13,23;CL:0000393,5.82e-10,39;CL:0000211,5.82e-10,39;CL:0000221,1.95e-08,44;CL:0000133,1.95e-08,44;CL:0002319,5.91e-08,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!3.59e-23!102;UBERON:0000924!3.59e-23!102;UBERON:0006601!3.59e-23!102;UBERON:0002346!3.60e-21!71;UBERON:0003075!3.60e-21!71;UBERON:0007284!3.60e-21!71;UBERON:0001017!7.06e-21!73;UBERON:0005743!7.06e-21!73;UBERON:0000033!9.36e-21!63;UBERON:0000073!1.82e-20!75;UBERON:0001016!1.82e-20!75;UBERON:0001049!1.30e-17!52;UBERON:0005068!1.30e-17!52;UBERON:0006241!1.30e-17!52;UBERON:0007135!1.30e-17!52;UBERON:0003056!3.27e-17!49;UBERON:0000955!4.54e-17!50;UBERON:0006238!4.54e-17!50;UBERON:0002616!2.09e-16!49;UBERON:0002020!4.16e-15!34;UBERON:0003080!7.70e-14!40;UBERON:0002780!3.10e-13!39;UBERON:0001890!3.10e-13!39;UBERON:0006240!3.10e-13!39;UBERON:0002791!1.50e-12!29;UBERON:0003528!1.50e-12!29;UBERON:0001893!1.50e-12!29;UBERON:0007811!2.28e-09!86;UBERON:0000153!2.90e-09!94;UBERON:0000468!4.22e-09!333;UBERON:0000956!5.10e-09!21;UBERON:0001869!5.10e-09!21;UBERON:0000203!5.10e-09!21;UBERON:0002021!6.44e-08!10;UBERON:0000411!6.44e-08!10;UBERON:0001950!6.44e-08!10;UBERON:0002619!1.92e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.66e-24,64;UBERON:0003075,2.66e-24,64;UBERON:0007284,2.66e-24,64;UBERON:0004121,9.15e-24,95;UBERON:0000924,9.15e-24,95;UBERON:0006601,9.15e-24,95;UBERON:0010371,2.29e-23,73;UBERON:0001017,4.56e-23,73;UBERON:0010314,9.74e-23,92;UBERON:0001016,9.65e-22,75;UBERON:0000073,5.94e-21,54;UBERON:0001049,2.94e-19,52;UBERON:0005068,2.94e-19,52;UBERON:0006241,2.94e-19,52;UBERON:0007135,2.94e-19,52;UBERON:0003056,3.75e-18,49;UBERON:0002020,6.38e-18,34;UBERON:0000955,3.04e-16,47;UBERON:0006238,3.04e-16,47;UBERON:0002616,1.68e-15,46;UBERON:0003528,7.27e-15,29;UBERON:0002791,7.27e-15,29;UBERON:0001893,7.27e-15,29;UBERON:0003080,3.30e-14,40;UBERON:0002780,1.62e-13,39;UBERON:0001890,1.62e-13,39;UBERON:0006240,1.62e-13,39;UBERON:0000956,1.19e-10,21;UBERON:0001869,1.19e-10,21;UBERON:0000203,1.19e-10,21;UBERON:0002021,3.87e-09,10;UBERON:0000411,3.87e-09,10;UBERON:0001950,3.87e-09,10;UBERON:0002619,8.95e-09,17 | |||
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| ||
|short_description=p5@Spag9 | |||
}} | }} |
Latest revision as of 23:32, 25 September 2015
Short description: | p5@Spag9 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Spag9_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 24bp_to_ENSMUST00000132079_5end |
EntrezGene: | Spag9 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 4.40e-14 | 33 |
neuronal stem cell | 4.40e-14 | 33 |
neuroblast | 4.40e-14 | 33 |
electrically signaling cell | 4.40e-14 | 33 |
CNS neuron (sensu Vertebrata) | 9.76e-13 | 23 |
neuroblast (sensu Vertebrata) | 9.76e-13 | 23 |
electrically responsive cell | 5.82e-10 | 39 |
electrically active cell | 5.82e-10 | 39 |
ectodermal cell | 1.95e-08 | 44 |
neurectodermal cell | 1.95e-08 | 44 |
neural cell | 5.91e-08 | 43 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 2.66e-24 | 64 |
neural plate | 2.66e-24 | 64 |
presumptive neural plate | 2.66e-24 | 64 |
ectoderm-derived structure | 9.15e-24 | 95 |
ectoderm | 9.15e-24 | 95 |
presumptive ectoderm | 9.15e-24 | 95 |
ecto-epithelium | 2.29e-23 | 73 |
central nervous system | 4.56e-23 | 73 |
structure with developmental contribution from neural crest | 9.74e-23 | 92 |
nervous system | 9.65e-22 | 75 |
regional part of nervous system | 5.94e-21 | 54 |
neural tube | 2.94e-19 | 52 |
neural rod | 2.94e-19 | 52 |
future spinal cord | 2.94e-19 | 52 |
neural keel | 2.94e-19 | 52 |
pre-chordal neural plate | 3.75e-18 | 49 |
gray matter | 6.38e-18 | 34 |
brain | 3.04e-16 | 47 |
future brain | 3.04e-16 | 47 |
regional part of brain | 1.68e-15 | 46 |
brain grey matter | 7.27e-15 | 29 |
regional part of telencephalon | 7.27e-15 | 29 |
telencephalon | 7.27e-15 | 29 |
anterior neural tube | 3.30e-14 | 40 |
regional part of forebrain | 1.62e-13 | 39 |
forebrain | 1.62e-13 | 39 |
future forebrain | 1.62e-13 | 39 |
cerebral cortex | 1.19e-10 | 21 |
cerebral hemisphere | 1.19e-10 | 21 |
pallium | 1.19e-10 | 21 |
occipital lobe | 3.87e-09 | 10 |
visual cortex | 3.87e-09 | 10 |
neocortex | 3.87e-09 | 10 |
regional part of cerebral cortex | 8.95e-09 | 17 |