FFCP PHASE1:Mm9::chr14:52898913..52899014,-: Difference between revisions
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{{FFCP|EntrezGene=76338|HGNC=|MCL_coexpression_id=13|UniProt=Q3TEG7,P59279,G3UXQ7,G3V022|association_with_transcript=0bp_to_ENSMUST00000100631,ENSMUST00000167116,ENSMUST00000172488,ENSMUST00000174020_5end|description=CAGE_peak_1_at_Rab2b_5end|id=chr14:52898913..52899014,-|ontology_enrichment_celltype=CL:0000393!7.29e-17!39;CL:0000211!7.29e-17!39;CL:0000540!7.26e-16!33;CL:0000047!7.26e-16!33;CL:0000031!7.26e-16!33;CL:0000404!7.26e-16!33;CL:0000055!7.13e-15!50;CL:0000221!1.05e-14!44;CL:0000133!1.05e-14!44;CL:0002319!1.30e-14!43;CL:0000117!1.77e-13!23;CL:0000337!1.77e-13!23|ontology_enrichment_celltype_v019_2=CL:0000393,7.24e-17,39;CL:0000211,7.24e-17,39;CL:0000540,7.21e-16,33;CL:0000047,7.21e-16,33;CL:0000031,7.21e-16,33;CL:0000404,7.21e-16,33;CL:0000221,1.04e-14,44;CL:0000133,1.04e-14,44;CL:0002319,1.29e-14,43;CL:0000117,1.76e-13,23;CL:0000337,1.76e-13,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!6.31e-32!75;UBERON:0001016!6.31e-32!75;UBERON:0001017!1.91e-31!73;UBERON:0005743!1.91e-31!73;UBERON:0004121!4.03e-31!102;UBERON:0000924!4.03e-31!102;UBERON:0006601!4.03e-31!102;UBERON:0002346!9.83e-31!71;UBERON:0003075!9.83e-31!71;UBERON:0007284!9.83e-31!71;UBERON:0000033!2.40e-26!63;UBERON:0001049!1.29e-24!52;UBERON:0005068!1.29e-24!52;UBERON:0006241!1.29e-24!52;UBERON:0007135!1.29e-24!52;UBERON:0000955!3.34e-24!50;UBERON:0006238!3.34e-24!50;UBERON:0002616!1.87e-23!49;UBERON:0003056!2.81e-23!49;UBERON:0003080!3.16e-20!40;UBERON:0000153!9.86e-20!94;UBERON:0002780!1.59e-19!39;UBERON:0001890!1.59e-19!39;UBERON:0006240!1.59e-19!39;UBERON:0002020!1.41e-18!34;UBERON:0007811!2.98e-17!86;UBERON:0002791!2.12e-16!29;UBERON:0003528!2.12e-16!29;UBERON:0001893!2.12e-16!29;UBERON:0000956!1.59e-11!21;UBERON:0001869!1.59e-11!21;UBERON:0000203!1.59e-11!21;UBERON:0002619!1.29e-09!17;UBERON:0000025!2.10e-09!114;UBERON:0004111!1.79e-08!122|ontology_enrichment_uberon_v019_2=UBERON:0001016,6.23e-32,75;UBERON:0001017,1.89e-31,73;UBERON:0002346,5.77e-29,64;UBERON:0003075,5.77e-29,64;UBERON:0007284,5.77e-29,64;UBERON:0004121,6.72e-29,95;UBERON:0000924,6.72e-29,95;UBERON:0006601,6.72e-29,95;UBERON:0010314,1.99e-26,92;UBERON:0000073,6.87e-26,54;UBERON:0001049,1.27e-24,52;UBERON:0005068,1.27e-24,52;UBERON:0006241,1.27e-24,52;UBERON:0007135,1.27e-24,52;UBERON:0010371,3.36e-24,73;UBERON:0003056,2.79e-23,49;UBERON:0000955,3.11e-22,47;UBERON:0006238,3.11e-22,47;UBERON:0002616,1.69e-21,46;UBERON:0003080,3.14e-20,40;UBERON:0002780,1.57e-19,39;UBERON:0001890,1.57e-19,39;UBERON:0006240,1.57e-19,39;UBERON:0002020,1.40e-18,34;UBERON:0003528,2.11e-16,29;UBERON:0002791,2.11e-16,29;UBERON:0001893,2.11e-16,29;UBERON:0000956,1.59e-11,21;UBERON:0001869,1.59e-11,21;UBERON:0000203,1.59e-11,21;UBERON:0002619,1.28e-09,17;UBERON:0000025,2.00e-09,114;UBERON:0004111,1.71e-08,122|phase1_expression=17.2960754873177,1.39590163055744,1.81999695755814,0.90739263392049,0.500895729946347,2.18243053485457,0.467225281191051,4.9066862907799,4.92760527530834,7.49006484230379,3.93801326918661,5.42450681168288,4.96482116800497,6.90621179110079,1.66554880907831,1.61980213911861,0.699561878128147,11.0411757875383,10.8320402548534,4.66828616977833,13.6919697143222,7.74469419366905,6.52999472847338,3.03985603307473,2.98232065387321,1.14846392823004,0.86152399231815,2.15471232685889,2.66032787238923,2.77233142735924,0.665191531965914,0.635030673459631,1.23012957516914,0,0.288851619751275,0.831173226792462,0.612508068787107,0.418531630736908,0.7813353445238,0.523523743973798,0,0.683045484958446,1.45653105909346,28.578577680456,22.3029248682932,15.2343804294196,7.04152209913235,8.50298109883741,14.2796018777407,17.1098311185369,11.7588594165305,7.18762821824858,10.5703041816374,4.35217285206807,7.73015738027667,8.48956138918625,8.88253663810146,16.5015069528782,28.1219880594841,34.9134046319542,24.0855933332348,5.08266798103698,8.00365316500025,6.29929802096979,6.92206453796882,4.9733608046227,9.28760342607055,6.91592949578798,20.4268536247701,18.765825428105,20.1911962897327,16.5677570954206,20.3199057675484,18.3736198822431,25.3032043488144,31.2534387447407,24.2254938198655,31.5387725070414,29.9532739849675,32.4440267816277,41.9013407699036,36.4639359389732,31.2684958881547,28.138130501584,28.1148775909331,18.2669722993674,21.0710087582672,24.4183274031144,11.7375599666435,14.9631689011435,7.53647670624362,1.72084775396277,0.679971333707751,2.69851595818909,0,0.448026887097336,6.60088774619234,26.0758393544428,13.5088722393492,11.3068663843309,11.6900038414645,7.69958864485907,2.54805239706646,0,2.38140145112336,2.02687892380079,1.51657333504435,5.02409070763864,22.2686579936568,18.8521516612327,8.32729568477452,12.4830846107978,14.9900073216438,17.9359942257621,18.5790157274414,13.4463252722753,5.6854842578906,16.0505286181102,1.76922110389975,6.30890714794896,5.07935492458905,5.81850303762267,0,19.0307518057506,19.2690970268379,2.55457055208591,4.55297473122497,1.79970819298022,3.68503658511888,32.3547781114417,22.87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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=76338 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=Q3TEG7,P59279,G3UXQ7,G3V022 | |||
|association_with_transcript=0bp_to_ENSMUST00000100631,ENSMUST00000167116,ENSMUST00000172488,ENSMUST00000174020_5end | |||
|cluster_id=chr14:52898913..52899014,- | |||
|description=CAGE_peak_1_at_Rab2b_5end | |||
|id=chr14:52898913..52899014,- | |||
|ontology_enrichment_celltype=CL:0000393!7.29e-17!39;CL:0000211!7.29e-17!39;CL:0000540!7.26e-16!33;CL:0000047!7.26e-16!33;CL:0000031!7.26e-16!33;CL:0000404!7.26e-16!33;CL:0000055!7.13e-15!50;CL:0000221!1.05e-14!44;CL:0000133!1.05e-14!44;CL:0002319!1.30e-14!43;CL:0000117!1.77e-13!23;CL:0000337!1.77e-13!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,7.24e-17,39;CL:0000211,7.24e-17,39;CL:0000540,7.21e-16,33;CL:0000047,7.21e-16,33;CL:0000031,7.21e-16,33;CL:0000404,7.21e-16,33;CL:0000221,1.04e-14,44;CL:0000133,1.04e-14,44;CL:0002319,1.29e-14,43;CL:0000117,1.76e-13,23;CL:0000337,1.76e-13,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!6.31e-32!75;UBERON:0001016!6.31e-32!75;UBERON:0001017!1.91e-31!73;UBERON:0005743!1.91e-31!73;UBERON:0004121!4.03e-31!102;UBERON:0000924!4.03e-31!102;UBERON:0006601!4.03e-31!102;UBERON:0002346!9.83e-31!71;UBERON:0003075!9.83e-31!71;UBERON:0007284!9.83e-31!71;UBERON:0000033!2.40e-26!63;UBERON:0001049!1.29e-24!52;UBERON:0005068!1.29e-24!52;UBERON:0006241!1.29e-24!52;UBERON:0007135!1.29e-24!52;UBERON:0000955!3.34e-24!50;UBERON:0006238!3.34e-24!50;UBERON:0002616!1.87e-23!49;UBERON:0003056!2.81e-23!49;UBERON:0003080!3.16e-20!40;UBERON:0000153!9.86e-20!94;UBERON:0002780!1.59e-19!39;UBERON:0001890!1.59e-19!39;UBERON:0006240!1.59e-19!39;UBERON:0002020!1.41e-18!34;UBERON:0007811!2.98e-17!86;UBERON:0002791!2.12e-16!29;UBERON:0003528!2.12e-16!29;UBERON:0001893!2.12e-16!29;UBERON:0000956!1.59e-11!21;UBERON:0001869!1.59e-11!21;UBERON:0000203!1.59e-11!21;UBERON:0002619!1.29e-09!17;UBERON:0000025!2.10e-09!114;UBERON:0004111!1.79e-08!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,6.23e-32,75;UBERON:0001017,1.89e-31,73;UBERON:0002346,5.77e-29,64;UBERON:0003075,5.77e-29,64;UBERON:0007284,5.77e-29,64;UBERON:0004121,6.72e-29,95;UBERON:0000924,6.72e-29,95;UBERON:0006601,6.72e-29,95;UBERON:0010314,1.99e-26,92;UBERON:0000073,6.87e-26,54;UBERON:0001049,1.27e-24,52;UBERON:0005068,1.27e-24,52;UBERON:0006241,1.27e-24,52;UBERON:0007135,1.27e-24,52;UBERON:0010371,3.36e-24,73;UBERON:0003056,2.79e-23,49;UBERON:0000955,3.11e-22,47;UBERON:0006238,3.11e-22,47;UBERON:0002616,1.69e-21,46;UBERON:0003080,3.14e-20,40;UBERON:0002780,1.57e-19,39;UBERON:0001890,1.57e-19,39;UBERON:0006240,1.57e-19,39;UBERON:0002020,1.40e-18,34;UBERON:0003528,2.11e-16,29;UBERON:0002791,2.11e-16,29;UBERON:0001893,2.11e-16,29;UBERON:0000956,1.59e-11,21;UBERON:0001869,1.59e-11,21;UBERON:0000203,1.59e-11,21;UBERON:0002619,1.28e-09,17;UBERON:0000025,2.00e-09,114;UBERON:0004111,1.71e-08,122 | |||
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| |||
|short_description=p1@Rab2b | |||
}} |
Latest revision as of 01:15, 26 September 2015
Short description: | p1@Rab2b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rab2b_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 0bp_to_ENSMUST00000100631, ENSMUST00000167116, ENSMUST00000172488, ENSMUST00000174020_5end |
EntrezGene: | Rab2b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 7.24e-17 | 39 |
electrically active cell | 7.24e-17 | 39 |
neuron | 7.21e-16 | 33 |
neuronal stem cell | 7.21e-16 | 33 |
neuroblast | 7.21e-16 | 33 |
electrically signaling cell | 7.21e-16 | 33 |
ectodermal cell | 1.04e-14 | 44 |
neurectodermal cell | 1.04e-14 | 44 |
neural cell | 1.29e-14 | 43 |
CNS neuron (sensu Vertebrata) | 1.76e-13 | 23 |
neuroblast (sensu Vertebrata) | 1.76e-13 | 23 |
Ontology term | p-value | n |
---|---|---|
nervous system | 6.23e-32 | 75 |
central nervous system | 1.89e-31 | 73 |
neurectoderm | 5.77e-29 | 64 |
neural plate | 5.77e-29 | 64 |
presumptive neural plate | 5.77e-29 | 64 |
ectoderm-derived structure | 6.72e-29 | 95 |
ectoderm | 6.72e-29 | 95 |
presumptive ectoderm | 6.72e-29 | 95 |
structure with developmental contribution from neural crest | 1.99e-26 | 92 |
regional part of nervous system | 6.87e-26 | 54 |
neural tube | 1.27e-24 | 52 |
neural rod | 1.27e-24 | 52 |
future spinal cord | 1.27e-24 | 52 |
neural keel | 1.27e-24 | 52 |
ecto-epithelium | 3.36e-24 | 73 |
pre-chordal neural plate | 2.79e-23 | 49 |
brain | 3.11e-22 | 47 |
future brain | 3.11e-22 | 47 |
regional part of brain | 1.69e-21 | 46 |
anterior neural tube | 3.14e-20 | 40 |
regional part of forebrain | 1.57e-19 | 39 |
forebrain | 1.57e-19 | 39 |
future forebrain | 1.57e-19 | 39 |
gray matter | 1.40e-18 | 34 |
brain grey matter | 2.11e-16 | 29 |
regional part of telencephalon | 2.11e-16 | 29 |
telencephalon | 2.11e-16 | 29 |
cerebral cortex | 1.59e-11 | 21 |
cerebral hemisphere | 1.59e-11 | 21 |
pallium | 1.59e-11 | 21 |
regional part of cerebral cortex | 1.28e-09 | 17 |
tube | 2.00e-09 | 114 |
anatomical conduit | 1.71e-08 | 122 |