FFCP PHASE1:Mm9::chr9:113702434..113702458,+: Difference between revisions
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{{FFCP|EntrezGene=76499|HGNC=|MCL_coexpression_id=1|UniProt=Q8BRT1|association_with_transcript=0bp_to_uc009rws.1,uc009rwt.1_5end|description=CAGE_peak_1_at_Clasp2_5end|id=chr9:113702434..113702458,+|ontology_enrichment_celltype=CL:0000540!1.96e-14!33;CL:0000047!1.96e-14!33;CL:0000031!1.96e-14!33;CL:0000404!1.96e-14!33;CL:0000393!9.69e-12!39;CL:0000211!9.69e-12!39;CL:0000117!1.79e-10!23;CL:0000337!1.79e-10!23;CL:0000221!1.97e-09!44;CL:0000133!1.97e-09!44;CL:0002319!4.16e-09!43;CL:0000055!1.19e-07!50|ontology_enrichment_celltype_v019_2=CL:0000540,1.84e-14,33;CL:0000047,1.84e-14,33;CL:0000031,1.84e-14,33;CL:0000404,1.84e-14,33;CL:0000393,1.14e-11,39;CL:0000211,1.14e-11,39;CL:0000117,1.71e-10,23;CL:0000337,1.71e-10,23;CL:0000221,2.38e-09,44;CL:0000133,2.38e-09,44;CL:0002319,5.03e-09,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!1.58e-27!102;UBERON:0000924!1.58e-27!102;UBERON:0006601!1.58e-27!102;UBERON:0002346!5.71e-26!71;UBERON:0003075!5.71e-26!71;UBERON:0007284!5.71e-26!71;UBERON:0001017!2.30e-25!73;UBERON:0005743!2.30e-25!73;UBERON:0000073!4.17e-24!75;UBERON:0001016!4.17e-24!75;UBERON:0000033!7.12e-22!63;UBERON:0001049!3.16e-19!52;UBERON:0005068!3.16e-19!52;UBERON:0006241!3.16e-19!52;UBERON:0007135!3.16e-19!52;UBERON:0000955!9.83e-19!50;UBERON:0006238!9.83e-19!50;UBERON:0002616!4.60e-18!49;UBERON:0003056!3.62e-17!49;UBERON:0003080!8.35e-15!40;UBERON:0002020!2.55e-14!34;UBERON:0002780!3.90e-14!39;UBERON:0001890!3.90e-14!39;UBERON:0006240!3.90e-14!39;UBERON:0004111!5.23e-13!122;UBERON:0002791!4.50e-12!29;UBERON:0003528!4.50e-12!29;UBERON:0001893!4.50e-12!29;UBERON:0000025!7.66e-12!114;UBERON:0000956!1.62e-08!21;UBERON:0001869!1.62e-08!21;UBERON:0000203!1.62e-08!21;UBERON:0000468!1.76e-08!333;UBERON:0007811!2.81e-08!86;UBERON:0000153!3.08e-07!94;UBERON:0002619!5.15e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0010314,2.32e-27,92;UBERON:0001017,2.05e-25,73;UBERON:0004121,1.72e-24,95;UBERON:0000924,1.72e-24,95;UBERON:0006601,1.72e-24,95;UBERON:0001016,5.07e-24,75;UBERON:0002346,2.60e-23,64;UBERON:0003075,2.60e-23,64;UBERON:0007284,2.60e-23,64;UBERON:0010371,3.14e-21,73;UBERON:0000073,1.55e-20,54;UBERON:0001049,2.90e-19,52;UBERON:0005068,2.90e-19,52;UBERON:0006241,2.90e-19,52;UBERON:0007135,2.90e-19,52;UBERON:0003056,3.35e-17,49;UBERON:0000955,7.87e-17,47;UBERON:0006238,7.87e-17,47;UBERON:0002616,3.54e-16,46;UBERON:0003080,7.83e-15,40;UBERON:0002020,2.40e-14,34;UBERON:0002780,3.67e-14,39;UBERON:0001890,3.67e-14,39;UBERON:0006240,3.67e-14,39;UBERON:0004111,6.42e-13,122;UBERON:0003528,4.28e-12,29;UBERON:0002791,4.28e-12,29;UBERON:0001893,4.28e-12,29;UBERON:0000025,9.37e-12,114;UBERON:0000956,1.57e-08,21;UBERON:0001869,1.57e-08,21;UBERON:0000203,1.57e-08,21;UBERON:0002619,5.01e-07,17|phase1_expression=17.135926640213,0,0,0,0,0.671517087647559,0,0.774739940649458,3.09735188733667,0.936258105287974,0.171217968225505,0.0797721589953364,5.82082481766099,2.88487327982691,2.33176833270964,2.22722794128809,0.699561878128147,8.51747846467242,11.2433835556706,8.06340338416257,32.0613203869533,2.58156473122302,1.04479915655574,0.95995453676044,2.75291137280604,0.57423196411502,0,0,0,0.756090389279792,0,0,0,0,0.288851619751275,0,0.612508068787107,0,0,0,0,0.683045484958446,0,12.9673722514845,13.1790010585369,6.05704282133549,1.56478268869608,5.88667922227206,2.85592037554813,5.63846707315422,3.49966054063406,2.87505128729943,3.85899993932794,6.5282592781021,6.38578218370682,0.771778308107841,5.15760191889762,4.12537673821954,24.2779753031517,25.9205579843296,22.8179305262225,0.338844532069132,0.889294796111139,4.49949858640699,2.96659908770092,4.9733608046227,5.39280198933128,8.4528027170742,31.6253317540857,25.7861342213529,29.8661445118962,28.8507494247842,40.1980744531937,33.3174973864675,25.8782771749238,28.4957823849107,88.092704799511,97.5531262970834,100.919492349352,29.8063010270238,28.6356324475542,26.5665818983948,76.7753247253798,81.0378158445619,90.7621591794252,48.3190880176815,63.0706545940026,44.5494675522468,0.984440513331393,6.87701196971748,37.1026545538148,11.185510400758,0.679971333707751,3.2382191498269,7.14754059192436,7.6164570806547,19.9431076587088,0,0,0,29.2954313135495,0,0,0,0,0,0,10.8474685733107,17.8667139716548,87.1355356310521,13.1848848342263,26.1840311348441,22.1390877365816,29.0894696266562,38.8042733547826,38.0769771728917,1.73036477414062,47.1393903558912,7.07688441559899,17.794353494215,18.7715290691335,13.091631834651,11.1835056730873,172.740670236813,140.748186978642,3.57639877292028,2.27648736561249,0.599902730993408,1.77898317902291,149.640848765418,145.485191696323,23.6230181972185,87.4336330567151,61.3717097592793,131.322044161642,116.326985619582,5.09196819251581,10.4501855312478,13.8997517138521,45.2449990155919,8.19758790665033,6.89706313300419,14.2249082546226,24.5648853072216,39.4611695077702,61.6226994570127,50.1304226394549,92.6158067245676,0.646703978798527,5.10586416453112,6.862093842394,5.47989331068937,5.28289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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=76499 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=Q8BRT1 | |||
|association_with_transcript=0bp_to_uc009rws.1,uc009rwt.1_5end | |||
|cluster_id=chr9:113702434..113702458,+ | |||
|description=CAGE_peak_1_at_Clasp2_5end | |||
|id=chr9:113702434..113702458,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.96e-14!33;CL:0000047!1.96e-14!33;CL:0000031!1.96e-14!33;CL:0000404!1.96e-14!33;CL:0000393!9.69e-12!39;CL:0000211!9.69e-12!39;CL:0000117!1.79e-10!23;CL:0000337!1.79e-10!23;CL:0000221!1.97e-09!44;CL:0000133!1.97e-09!44;CL:0002319!4.16e-09!43;CL:0000055!1.19e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.84e-14,33;CL:0000047,1.84e-14,33;CL:0000031,1.84e-14,33;CL:0000404,1.84e-14,33;CL:0000393,1.14e-11,39;CL:0000211,1.14e-11,39;CL:0000117,1.71e-10,23;CL:0000337,1.71e-10,23;CL:0000221,2.38e-09,44;CL:0000133,2.38e-09,44;CL:0002319,5.03e-09,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!1.58e-27!102;UBERON:0000924!1.58e-27!102;UBERON:0006601!1.58e-27!102;UBERON:0002346!5.71e-26!71;UBERON:0003075!5.71e-26!71;UBERON:0007284!5.71e-26!71;UBERON:0001017!2.30e-25!73;UBERON:0005743!2.30e-25!73;UBERON:0000073!4.17e-24!75;UBERON:0001016!4.17e-24!75;UBERON:0000033!7.12e-22!63;UBERON:0001049!3.16e-19!52;UBERON:0005068!3.16e-19!52;UBERON:0006241!3.16e-19!52;UBERON:0007135!3.16e-19!52;UBERON:0000955!9.83e-19!50;UBERON:0006238!9.83e-19!50;UBERON:0002616!4.60e-18!49;UBERON:0003056!3.62e-17!49;UBERON:0003080!8.35e-15!40;UBERON:0002020!2.55e-14!34;UBERON:0002780!3.90e-14!39;UBERON:0001890!3.90e-14!39;UBERON:0006240!3.90e-14!39;UBERON:0004111!5.23e-13!122;UBERON:0002791!4.50e-12!29;UBERON:0003528!4.50e-12!29;UBERON:0001893!4.50e-12!29;UBERON:0000025!7.66e-12!114;UBERON:0000956!1.62e-08!21;UBERON:0001869!1.62e-08!21;UBERON:0000203!1.62e-08!21;UBERON:0000468!1.76e-08!333;UBERON:0007811!2.81e-08!86;UBERON:0000153!3.08e-07!94;UBERON:0002619!5.15e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,2.32e-27,92;UBERON:0001017,2.05e-25,73;UBERON:0004121,1.72e-24,95;UBERON:0000924,1.72e-24,95;UBERON:0006601,1.72e-24,95;UBERON:0001016,5.07e-24,75;UBERON:0002346,2.60e-23,64;UBERON:0003075,2.60e-23,64;UBERON:0007284,2.60e-23,64;UBERON:0010371,3.14e-21,73;UBERON:0000073,1.55e-20,54;UBERON:0001049,2.90e-19,52;UBERON:0005068,2.90e-19,52;UBERON:0006241,2.90e-19,52;UBERON:0007135,2.90e-19,52;UBERON:0003056,3.35e-17,49;UBERON:0000955,7.87e-17,47;UBERON:0006238,7.87e-17,47;UBERON:0002616,3.54e-16,46;UBERON:0003080,7.83e-15,40;UBERON:0002020,2.40e-14,34;UBERON:0002780,3.67e-14,39;UBERON:0001890,3.67e-14,39;UBERON:0006240,3.67e-14,39;UBERON:0004111,6.42e-13,122;UBERON:0003528,4.28e-12,29;UBERON:0002791,4.28e-12,29;UBERON:0001893,4.28e-12,29;UBERON:0000025,9.37e-12,114;UBERON:0000956,1.57e-08,21;UBERON:0001869,1.57e-08,21;UBERON:0000203,1.57e-08,21;UBERON:0002619,5.01e-07,17 | |||
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| |||
|short_description=p1@Clasp2 | |||
}} |
Latest revision as of 06:50, 26 September 2015
Short description: | p1@Clasp2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Clasp2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_uc009rws.1, uc009rwt.1_5end |
EntrezGene: | Clasp2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.84e-14 | 33 |
neuronal stem cell | 1.84e-14 | 33 |
neuroblast | 1.84e-14 | 33 |
electrically signaling cell | 1.84e-14 | 33 |
electrically responsive cell | 1.14e-11 | 39 |
electrically active cell | 1.14e-11 | 39 |
CNS neuron (sensu Vertebrata) | 1.71e-10 | 23 |
neuroblast (sensu Vertebrata) | 1.71e-10 | 23 |
ectodermal cell | 2.38e-09 | 44 |
neurectodermal cell | 2.38e-09 | 44 |
neural cell | 5.03e-09 | 43 |
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 2.32e-27 | 92 |
central nervous system | 2.05e-25 | 73 |
ectoderm-derived structure | 1.72e-24 | 95 |
ectoderm | 1.72e-24 | 95 |
presumptive ectoderm | 1.72e-24 | 95 |
nervous system | 5.07e-24 | 75 |
neurectoderm | 2.60e-23 | 64 |
neural plate | 2.60e-23 | 64 |
presumptive neural plate | 2.60e-23 | 64 |
ecto-epithelium | 3.14e-21 | 73 |
regional part of nervous system | 1.55e-20 | 54 |
neural tube | 2.90e-19 | 52 |
neural rod | 2.90e-19 | 52 |
future spinal cord | 2.90e-19 | 52 |
neural keel | 2.90e-19 | 52 |
pre-chordal neural plate | 3.35e-17 | 49 |
brain | 7.87e-17 | 47 |
future brain | 7.87e-17 | 47 |
regional part of brain | 3.54e-16 | 46 |
anterior neural tube | 7.83e-15 | 40 |
gray matter | 2.40e-14 | 34 |
regional part of forebrain | 3.67e-14 | 39 |
forebrain | 3.67e-14 | 39 |
future forebrain | 3.67e-14 | 39 |
anatomical conduit | 6.42e-13 | 122 |
brain grey matter | 4.28e-12 | 29 |
regional part of telencephalon | 4.28e-12 | 29 |
telencephalon | 4.28e-12 | 29 |
tube | 9.37e-12 | 114 |
cerebral cortex | 1.57e-08 | 21 |
cerebral hemisphere | 1.57e-08 | 21 |
pallium | 1.57e-08 | 21 |
regional part of cerebral cortex | 5.01e-07 | 17 |