FFCP PHASE1:Mm9::chr1:134776921..134776943,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=16980 | |EntrezGene=16980 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=2161 | |||
|TSSclassifier=NA | |||
|UniProt=Q6PHP6 | |UniProt=Q6PHP6 | ||
|association_with_transcript=0bp_to_ENSMUST00000159088,NM_010732,uc007cpi.2_5end | |association_with_transcript=0bp_to_ENSMUST00000159088,NM_010732,uc007cpi.2_5end | ||
|cluster_id=chr1:134776921..134776943,+ | |||
|description=CAGE_peak_1_at_Lrrn2_5end | |description=CAGE_peak_1_at_Lrrn2_5end | ||
|id=chr1:134776921..134776943,+ | |id=chr1:134776921..134776943,+ | ||
|ontology_enrichment_celltype=CL:0002319!3.72e-18!43;CL:0000221!1.06e-17!44;CL:0000133!1.06e-17!44;CL:0000540!3.93e-16!33;CL:0000047!3.93e-16!33;CL:0000031!3.93e-16!33;CL:0000404!3.93e-16!33;CL:0000117!3.80e-14!23;CL:0000337!3.80e-14!23;CL:0000055!1.86e-12!50;CL:0000393!5.92e-11!39;CL:0000211!5.92e-11!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,1.08e-19,43;CL:0000221,9.42e-19,44;CL:0000133,9.42e-19,44;CL:0000540,1.19e-17,33;CL:0000047,1.19e-17,33;CL:0000031,1.19e-17,33;CL:0000404,1.19e-17,33;CL:0000117,1.85e-15,23;CL:0000337,1.85e-15,23;CL:0000393,2.46e-12,39;CL:0000211,2.46e-12,39 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.00e-37!73;UBERON:0005743!1.00e-37!73;UBERON:0000073!6.19e-36!75;UBERON:0001016!6.19e-36!75;UBERON:0004121!3.35e-32!102;UBERON:0000924!3.35e-32!102;UBERON:0006601!3.35e-32!102;UBERON:0002346!6.68e-28!71;UBERON:0003075!6.68e-28!71;UBERON:0007284!6.68e-28!71;UBERON:0001049!1.97e-27!52;UBERON:0005068!1.97e-27!52;UBERON:0006241!1.97e-27!52;UBERON:0007135!1.97e-27!52;UBERON:0000955!2.88e-26!50;UBERON:0006238!2.88e-26!50;UBERON:0002616!1.03e-25!49;UBERON:0000033!4.51e-24!63;UBERON:0003080!1.33e-20!40;UBERON:0003056!3.44e-20!49;UBERON:0002780!4.31e-20!39;UBERON:0001890!4.31e-20!39;UBERON:0006240!4.31e-20!39;UBERON:0002020!8.95e-20!34;UBERON:0002791!1.32e-16!29;UBERON:0003528!1.32e-16!29;UBERON:0001893!1.32e-16!29;UBERON:0000956!1.10e-11!21;UBERON:0001869!1.10e-11!21;UBERON:0000203!1.10e-11!21;UBERON:0007811!7.27e-11!86;UBERON:0000153!1.34e-10!94;UBERON:0002619!7.99e-10!17;UBERON:0000468!5.35e-09!333;UBERON:0000025!6.62e-08!114;UBERON:0003076!2.67e-07!12;UBERON:0003057!2.67e-07!12;UBERON:0004111!4.28e-07!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.61e-41,73;UBERON:0001016,2.57e-39,75;UBERON:0000073,4.65e-32,54;UBERON:0004121,5.22e-31,95;UBERON:0000924,5.22e-31,95;UBERON:0006601,5.22e-31,95;UBERON:0001049,3.86e-30,52;UBERON:0005068,3.86e-30,52;UBERON:0006241,3.86e-30,52;UBERON:0007135,3.86e-30,52;UBERON:0002346,9.44e-30,64;UBERON:0003075,9.44e-30,64;UBERON:0007284,9.44e-30,64;UBERON:0010314,5.00e-27,92;UBERON:0000955,2.30e-26,47;UBERON:0006238,2.30e-26,47;UBERON:0002616,9.15e-26,46;UBERON:0010371,3.05e-24,73;UBERON:0003080,1.37e-22,40;UBERON:0002780,5.01e-22,39;UBERON:0001890,5.01e-22,39;UBERON:0006240,5.01e-22,39;UBERON:0003056,8.46e-22,49;UBERON:0002020,1.12e-21,34;UBERON:0003528,3.57e-18,29;UBERON:0002791,3.57e-18,29;UBERON:0001893,3.57e-18,29;UBERON:0000956,9.72e-13,21;UBERON:0001869,9.72e-13,21;UBERON:0000203,9.72e-13,21;UBERON:0002619,1.10e-10,17;UBERON:0003076,6.71e-08,12;UBERON:0003057,6.71e-08,12;UBERON:0000025,6.92e-08,114 | |||
|phase1_expression=2.88267924788629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.93251082876205,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56478268869608,11.9913836009246,32.5135550447018,20.9984291000226,3.91961980551015,11.5002051491977,0,0,0,0.257259436035947,0.286533439938757,0,14.566785181891,14.2827564403449,19.6487735086916,0.677689064138264,0.889294796111139,0,0,0,19.4740071836963,34.5796474789399,10.3689612308478,9.04539786822327,10.3059231062177,25.7085885963423,23.8538024227743,8.94182834269164,8.14686503655009,6.43453150627015,19.82085857989,40.7322608491749,35.4831091821922,23.6076455037047,29.1845583091687,21.8783615633839,13.959149950069,14.069065250792,19.2525792198781,20.9186295686304,16.657486653495,12.4887628702951,0.075726193333184,0.0755715601067855,0,0,0,0,0,0,1.54488862144927,0,0,0,0.845060518660083,0,0,0,0,0,0,0.68510327831436,0,2.82040064223167,2.77576522825817,3.95805121805784,1.61430848079241,3.01445281105245,2.70454026412121,2.51333182659351,0.247194967734374,0.86759614151947,0,1.7794353494215,0.662524555381181,0,0,25.7647101370161,32.673686262899,0,0,0,0,11.0845073159569,16.9275223042892,20.6073137465098,13.5582969749976,14.3200656104985,25.973505569945,35.5308366118389,3.7680564624617,0.995255764880744,0.505445516867349,0.631325567659422,1.69156575851515,1.14951052216736,2.88099407688559,3.61691562805716,4.35433594568498,3.07472928683639,4.68508622798644,1.55222022443409,1.29340795759705,1.51284864134255,2.11141348996739,2.19195732427575,1.39023624612799,3.1342694986995,1.23469281844766,2.18937693500343,0,0,0,1.65700618028402,1.40715635988658,1.98068267607116,3.55117103377815,0.983821158737019,3.08534225774756,1.62773761325285,4.02410102099429,2.80236821681207,2.79751744852917,2.79084688934462,2.02672023864639,3.21639972335731,3.95190207523891,1.47627060636409,50.2592977068264,39.5153711536452,0,0,0.853153002140936,0.696710015581316,1.54640953586512,0.80673409849337,0.889512175379481,0.760902504450237,1.42358718463353,0.988193728344065,1.50801125280162,0.994782360205754,0.779856348476481,0.898819408654221,0.864552199498777,0.199141273254367,1.13800740571849,1.82797620175566,3.38123207019241,0.814605311381257,0.387904974335251,0.911765658574141,1.01178459398812,0,0,0.123397163921801,0,0.333690211432188,0.393117990226406,0,0,0,0,0,0.162135226775035,0.274561413188081,0,0,0,0,0,0,0.184753190166605,1.51593129416388,0.977789858652155,0.678980343100753,0.704070744865506,0.670025029767263,0.952174563544055,1.56106918286239,1.10344600874334,0.664394068946325,1.59454768657487,0.327726629431476,0.345369963731791,0.723245292907558,0,0,0.491764273019036,0.551873492609465,12.8440471990234,12.4244387787735,0,1.76729649043061,2.2085575359138,4.29482618726302,2.58508077279359,3.82350076724083,7.35235624471901,7.35998980050964,4.45291771842384,7.01414058987149,6.32460444714438,11.5675673911851,2.6968616189571,5.52003371368491,5.21238269931443,4.45419332025846,0,1.94224508923985,0.604647113929502,0.188605079755898,0,1.22974059177571,1.80899805217755,0.363533729477506,1.42598951353889,1.58018378967908,0,2.06271086496374,8.5109901438447,2.88097750450096,4.65691261617916,3.85806663056866,2.83744373827638,5.52943334566419,5.92376474167636,7.30715877875038,0.23467170806371,1.0591603543191,0.441056796109924,0.65954501176592,1.13025098687134,1.56813604813205,0.716234064018819,0.984845398470368,1.1659233465194,12.0526446306831,0,1.44470807574256,0.370389054739423,0.188368457004691,0,0,0,0,0,0.954670618015114,0.790839983952838,1.01659733563424,1.29606408986162,0.209088296014469,0.87345025498471,0.944050424693745,1.65306911450672,0.785267825952089,0.90730481304255,0,0,1.94371509857172,1.82004339502807,1.75006069509643,4.26227417476513,2.70329800785245,3.87278887530988,4.9477666240701,2.41176492179135,0.724752362478018,0.288030006257865,0,1.62180172232131,1.1298205288131,0.129920822977795,0.716106782669926,0.198681354781265,0.120195449519969,0.147689527174577,0.201932899896295,0,0,0.0974578807397524,0.0962118416403295,0.116876902181569,0.906921534460845,0.221985953374065,0.358855426437903,0.167884616364078,0.19318959403219,3.19060208267009,1.46521299413812,0.428736758158132,1.50471631210609,13.5540442228096,12.889106622201,14.3223878359849,13.748254587495,9.59115527678899,9.82012066606611,12.1504050041725,5.85417564191487,8.15656336171568,8.28416498802912,1.14166082342594,4.38927360741134,2.04880326904961,4.132814190161,2.09613162627982,3.12533964365024,3.33370091702423,3.09052585858341,4.81378814387723,4.29585259998456,3.29523089857312,3.01802146217722,3.83930180626518,3.13723246783859,4.307660171671,4.76293691283074,5.56244764535306,4.24400285020151,6.1812885120496,3.38557516309114,3.08582327146874,2.30718548007139,3.09967046931517,3.34296758254356,3.67026583619789,4.39995961036718,4.57319932181931,3.94604567156764,4.6173398707593,2.80571135828869,4.03359061622192,4.53120618927592,2.04615521584845,4.64810523557898,1.15743966588685,7.74412791607632,3.50897412668113,4.29742108096597,4.3996316375834,1.32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|phase1_expression=2.88267924788629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.93251082876205,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56478268869608,11.9913836009246,32.5135550447018,20.9984291000226,3.91961980551015,11.5002051491977,0,0,0,0.257259436035947,0.286533439938757,0,14.566785181891,14.2827564403449,19.6487735086916,0.677689064138264,0.889294796111139,0,0,0,19.4740071836963,34.5796474789399,10.3689612308478,9.04539786822327,10.3059231062177,25.7085885963423,23.8538024227743,8.94182834269164,8.14686503655009,6.43453150627015,19.82085857989,40.7322608491749,35.4831091821922,23.6076455037047,29.1845583091687,21.8783615633839,13.959149950069,14.069065250792,19.2525792198781,20.9186295686304,16.657486653495,12.4887628702951,0.075726193333184,0.0755715601067855,0,0,0,0,0,0,1.54488862144927,0,0,0,0.845060518660083,0,0,0,0,0,0,0.68510327831436,0,2.82040064223167,2.77576522825817,3.95805121805784,1.61430848079241,3.01445281105245,2.70454026412121,2.51333182659351,0.247194967734374,0.86759614151947,0,1.7794353494215,0.662524555381181,0,0,25.7647101370161,32.673686262899,0,0,0,0,11.0845073159569,16.9275223042892,20.6073137465098,13.5582969749976,14.3200656104985,25.973505569945,35.5308366118389,3.7680564624617,0.995255764880744,0.505445516867349,0.631325567659422,1.69156575851515,1.14951052216736,2.88099407688559,3.61691562805716,4.35433594568498,3.07472928683639,4.68508622798644,1.55222022443409,1.29340795759705,1.51284864134255,2.11141348996739,2.19195732427575,1.39023624612799,3.1342694986995,1.23469281844766,2.18937693500343,0,0,0,1.65700618028402,1.40715635988658,1.98068267607116,3.55117103377815,0.983821158737019,3.08534225774756,1.62773761325285,4.02410102099429,2.80236821681207,2.79751744852917,2.79084688934462,2.02672023864639,3.21639972335731,3.95190207523891,1.47627060636409,50.2592977068264,39.5153711536452,0,0,0.853153002140936,0.696710015581316,1.54640953586512,0.80673409849337,0.889512175379481,0.760902504450237,1.42358718463353,0.988193728344065,1.50801125280162,0.994782360205754,0.779856348476481,0.898819408654221,0.864552199498777,0.199141273254367,1.13800740571849,1.82797620175566,3.38123207019241,0.814605311381257,0.387904974335251,0.911765658574141,1.01178459398812,0,0,0.123397163921801,0,0.333690211432188,0.393117990226406,0,0,0,0,0,0.162135226775035,0.274561413188081,0,0,0,0,0,0,0.184753190166605,1.51593129416388,0.977789858652155,0.678980343100753,0.704070744865506,0.670025029767263,0.952174563544055,1.56106918286239,1.10344600874334,0.664394068946325,1.59454768657487,0.327726629431476,0.345369963731791,0.723245292907558,0,0,0.491764273019036,0.551873492609465,12.8440471990234,12.4244387787735,0,1.76729649043061,2.2085575359138,4.29482618726302,2.58508077279359,3.82350076724083,7.35235624471901,7.35998980050964,4.45291771842384,7.01414058987149,6.32460444714438,11.5675673911851,2.6968616189571,5.52003371368491,5.21238269931443,4.45419332025846,0,1.94224508923985,0.604647113929502,0.188605079755898,0,1.22974059177571,1.80899805217755,0.363533729477506,1.42598951353889,1.58018378967908,0,2.06271086496374,8.5109901438447,2.88097750450096,4.65691261617916,3.85806663056866,2.83744373827638,5.52943334566419,5.92376474167636,7.30715877875038,0.23467170806371,1.0591603543191,0.441056796109924,0.65954501176592,1.13025098687134,1.56813604813205,0.716234064018819,0.984845398470368,1.1659233465194,12.0526446306831,0,1.44470807574256,0.370389054739423,0.188368457004691,0,0,0,0,0,0.954670618015114,0.790839983952838,1.01659733563424,1.29606408986162,0.209088296014469,0.87345025498471,0.944050424693745,1.65306911450672,0.785267825952089,0.90730481304255,0,0,1.94371509857172,1.82004339502807,1.75006069509643,4.26227417476513,2.70329800785245,3.87278887530988,4.9477666240701,2.41176492179135,0.724752362478018,0.288030006257865,0,1.62180172232131,1.1298205288131,0.129920822977795,0.716106782669926,0.198681354781265,0.120195449519969,0.147689527174577,0.201932899896295,0,0,0.0974578807397524,0.0962118416403295,0.116876902181569,0.906921534460845,0.221985953374065,0.358855426437903,0.167884616364078,0.19318959403219,3.19060208267009,1.46521299413812,0.428736758158132,1.50471631210609,13.5540442228096,12.889106622201,14.3223878359849,13.748254587495,9.59115527678899,9.82012066606611,12.1504050041725,5.85417564191487,8.15656336171568,8.28416498802912,1.14166082342594,4.38927360741134,2.04880326904961,4.132814190161,2.09613162627982,3.12533964365024,3.33370091702423,3.09052585858341,4.81378814387723,4.29585259998456,3.29523089857312,3.01802146217722,3.83930180626518,3.13723246783859,4.307660171671,4.76293691283074,5.56244764535306,4.24400285020151,6.1812885120496,3.38557516309114,3.08582327146874,2.30718548007139,3.09967046931517,3.34296758254356,3.67026583619789,4.39995961036718,4.57319932181931,3.94604567156764,4.6173398707593,2.80571135828869,4.03359061622192,4.53120618927592,2.04615521584845,4.64810523557898,1.15743966588685,7.74412791607632,3.50897412668113,4.29742108096597,4.3996316375834,1.32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| ||
|short_description=p1@Lrrn2 | |short_description=p1@Lrrn2 | ||
}} | }} |
Latest revision as of 09:13, 26 September 2015
Short description: | p1@Lrrn2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Lrrn2_5end |
Coexpression cluster: | MCL_coexpression_mm9:2161 |
Association with transcript: | 0bp_to_ENSMUST00000159088, NM_010732, uc007cpi.2_5end |
EntrezGene: | Lrrn2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 1.08e-19 | 43 |
ectodermal cell | 9.42e-19 | 44 |
neurectodermal cell | 9.42e-19 | 44 |
neuron | 1.19e-17 | 33 |
neuronal stem cell | 1.19e-17 | 33 |
neuroblast | 1.19e-17 | 33 |
electrically signaling cell | 1.19e-17 | 33 |
CNS neuron (sensu Vertebrata) | 1.85e-15 | 23 |
neuroblast (sensu Vertebrata) | 1.85e-15 | 23 |
electrically responsive cell | 2.46e-12 | 39 |
electrically active cell | 2.46e-12 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.61e-41 | 73 |
nervous system | 2.57e-39 | 75 |
regional part of nervous system | 4.65e-32 | 54 |
ectoderm-derived structure | 5.22e-31 | 95 |
ectoderm | 5.22e-31 | 95 |
presumptive ectoderm | 5.22e-31 | 95 |
neural tube | 3.86e-30 | 52 |
neural rod | 3.86e-30 | 52 |
future spinal cord | 3.86e-30 | 52 |
neural keel | 3.86e-30 | 52 |
neurectoderm | 9.44e-30 | 64 |
neural plate | 9.44e-30 | 64 |
presumptive neural plate | 9.44e-30 | 64 |
structure with developmental contribution from neural crest | 5.00e-27 | 92 |
brain | 2.30e-26 | 47 |
future brain | 2.30e-26 | 47 |
regional part of brain | 9.15e-26 | 46 |
ecto-epithelium | 3.05e-24 | 73 |
anterior neural tube | 1.37e-22 | 40 |
regional part of forebrain | 5.01e-22 | 39 |
forebrain | 5.01e-22 | 39 |
future forebrain | 5.01e-22 | 39 |
pre-chordal neural plate | 8.46e-22 | 49 |
gray matter | 1.12e-21 | 34 |
brain grey matter | 3.57e-18 | 29 |
regional part of telencephalon | 3.57e-18 | 29 |
telencephalon | 3.57e-18 | 29 |
cerebral cortex | 9.72e-13 | 21 |
cerebral hemisphere | 9.72e-13 | 21 |
pallium | 9.72e-13 | 21 |
regional part of cerebral cortex | 1.10e-10 | 17 |
posterior neural tube | 6.71e-08 | 12 |
chordal neural plate | 6.71e-08 | 12 |
tube | 6.92e-08 | 114 |