FFCP PHASE1:Mm9::chr10:79602092..79602115,-: Difference between revisions
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{{FFCP|EntrezGene=100503659|HGNC=|MCL_coexpression_id=159|UniProt=E9QP85,E9Q6U0,Q66L44|association_with_transcript=0bp_to_ENSMUST00000105369,ENSMUST00000132523,ENSMUST00000147778,ENSMUST00000170219,NR_036582,uc007gbx.1_5end|description=CAGE_peak_1_at_Dos_5end|id=chr10:79602092..79602115,-|ontology_enrichment_celltype=CL:0000540!6.70e-17!33;CL:0000047!6.70e-17!33;CL:0000031!6.70e-17!33;CL:0000404!6.70e-17!33;CL:0000221!2.95e-16!44;CL:0000133!2.95e-16!44;CL:0002319!6.06e-16!43;CL:0000117!1.21e-14!23;CL:0000337!1.21e-14!23;CL:0000393!2.62e-13!39;CL:0000211!2.62e-13!39;CL:0000055!3.82e-12!50|ontology_enrichment_celltype_v019_2=CL:0000540,5.46e-17,33;CL:0000047,5.46e-17,33;CL:0000031,5.46e-17,33;CL:0000404,5.46e-17,33;CL:0000221,2.43e-16,44;CL:0000133,2.43e-16,44;CL:0002319,5.01e-16,43;CL:0000117,1.02e-14,23;CL:0000337,1.02e-14,23;CL:0000393,2.24e-13,39;CL:0000211,2.24e-13,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!9.36e-36!73;UBERON:0005743!9.36e-36!73;UBERON:0004121!1.08e-34!102;UBERON:0000924!1.08e-34!102;UBERON:0006601!1.08e-34!102;UBERON:0000073!1.40e-34!75;UBERON:0001016!1.40e-34!75;UBERON:0002346!1.89e-29!71;UBERON:0003075!1.89e-29!71;UBERON:0007284!1.89e-29!71;UBERON:0001049!2.05e-27!52;UBERON:0005068!2.05e-27!52;UBERON:0006241!2.05e-27!52;UBERON:0007135!2.05e-27!52;UBERON:0000955!9.02e-26!50;UBERON:0006238!9.02e-26!50;UBERON:0000033!3.64e-25!63;UBERON:0002616!3.82e-25!49;UBERON:0003056!9.72e-22!49;UBERON:0003080!2.28e-21!40;UBERON:0002780!1.22e-20!39;UBERON:0001890!1.22e-20!39;UBERON:0006240!1.22e-20!39;UBERON:0002020!4.24e-19!34;UBERON:0007811!3.15e-17!86;UBERON:0000153!4.30e-17!94;UBERON:0002791!1.33e-15!29;UBERON:0003528!1.33e-15!29;UBERON:0001893!1.33e-15!29;UBERON:0000956!1.27e-10!21;UBERON:0001869!1.27e-10!21;UBERON:0000203!1.27e-10!21;UBERON:0002619!6.84e-09!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.93e-36,73;UBERON:0001016,9.00e-35,75;UBERON:0004121,4.12e-34,95;UBERON:0000924,4.12e-34,95;UBERON:0006601,4.12e-34,95;UBERON:0002346,1.96e-29,64;UBERON:0003075,1.96e-29,64;UBERON:0007284,1.96e-29,64;UBERON:0000073,4.20e-29,54;UBERON:0010371,1.38e-28,73;UBERON:0001049,1.45e-27,52;UBERON:0005068,1.45e-27,52;UBERON:0006241,1.45e-27,52;UBERON:0007135,1.45e-27,52;UBERON:0000955,9.17e-24,47;UBERON:0006238,9.17e-24,47;UBERON:0002616,3.81e-23,46;UBERON:0003056,7.43e-22,49;UBERON:0003080,1.75e-21,40;UBERON:0002780,9.44e-21,39;UBERON:0001890,9.44e-21,39;UBERON:0006240,9.44e-21,39;UBERON:0002020,3.36e-19,34;UBERON:0010314,2.03e-16,92;UBERON:0003528,1.11e-15,29;UBERON:0002791,1.11e-15,29;UBERON:0001893,1.11e-15,29;UBERON:0000956,1.12e-10,21;UBERON:0001869,1.12e-10,21;UBERON:0000203,1.12e-10,21;UBERON:0002619,6.21e-09,17|phase1_expression=7.68714466103011,0.348975407639361,0.454999239389536,0,0,2.18243053485457,0.934450562382103,15.236552166106,12.248618827195,11.4691617897777,3.4243593645101,5.02564601670619,8.21763503669787,10.1407666806037,0.333109761815663,0.202475267389826,0.699561878128147,0.630924330716475,0.959801035240171,0.42438965179803,19.3898701544439,1.29078236561151,0.783599367416806,0.159992422793407,1.14704640533585,0,0.430761996159075,0.430942465371778,0.380046838912748,0,0.221730510655305,8.25539875497521,3.69038872550742,0,0.577703239502549,0.332469290716985,1.83752420636132,0,0,0,1.17646297606203,0.683045484958446,0,4.28049181116963,6.58950052926845,6.79122982998222,5.47673941043627,10.6832326626419,19.7717564461025,13.026803237977,3.91961980551015,8.62515386189829,1.8456086666351,28.2891235384424,14.7881271622684,2.31533492432352,2.0057340795713,1.03134418455488,119.771344828882,100.508286061686,100.145361753976,9.82649143000483,6.22506357277798,2.6996991518442,3.9554654502679,2.8419204597844,14.9800055259202,23.0530983192933,36.7061227572011,30.7813539396255,34.703618622978,183.102281002838,139.368049340468,35.0323685754769,27.2201137691791,37.6879702510109,80.3845931295537,169.568784977129,164.051777517668,112.235230858395,107.132030658422,98.9735404057844,136.799669510677,175.581934329884,171.898028748911,144.073378296624,148.066548031067,144.273171068783,3.3319525066601,4.76100828672749,6.66688324013859,0,0,0,0,0.896053774194671,4.35377702408431,4.09032774187339,3.11743205523443,3.88673531961374,15.9153064347649,1.28326477414318,5.09610479413291,0,2.59789249213457,2.78695852022608,4.04419556011827,4.11061966988616,3.88406825470758,25.6804900582147,9.88866362566974,7.00270600117925,8.30215790121811,6.78251882486802,8.93674174231356,12.8179923156269,6.42706916109372,0.722996784599558,0,0.970601099684455,0.883366073841574,0,3.72783522436244,31.6203260772471,26.3902850584953,0.766371165625774,1.31796636956512,0,0.889491589511453,158.927868408517,72.285095245343,88.2093551832308,77.351822485563,67.2531652778769,138.179049632107,94.7488976315705,4.88828946481518,3.73220911830279,14.6579199891531,8.41767423545896,6.8963834770233,7.35686734187113,10.4436035287103,11.0014517020072,13.8114093277196,13.0675994690547,16.58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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=100503659 | |||
|HGNC= | |||
|MCL_coexpression_id=159 | |||
|TSSclassifier=NA | |||
|UniProt=E9QP85,E9Q6U0,Q66L44 | |||
|association_with_transcript=0bp_to_ENSMUST00000105369,ENSMUST00000132523,ENSMUST00000147778,ENSMUST00000170219,NR_036582,uc007gbx.1_5end | |||
|cluster_id=chr10:79602092..79602115,- | |||
|description=CAGE_peak_1_at_Dos_5end | |||
|id=chr10:79602092..79602115,- | |||
|ontology_enrichment_celltype=CL:0000540!6.70e-17!33;CL:0000047!6.70e-17!33;CL:0000031!6.70e-17!33;CL:0000404!6.70e-17!33;CL:0000221!2.95e-16!44;CL:0000133!2.95e-16!44;CL:0002319!6.06e-16!43;CL:0000117!1.21e-14!23;CL:0000337!1.21e-14!23;CL:0000393!2.62e-13!39;CL:0000211!2.62e-13!39;CL:0000055!3.82e-12!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,5.46e-17,33;CL:0000047,5.46e-17,33;CL:0000031,5.46e-17,33;CL:0000404,5.46e-17,33;CL:0000221,2.43e-16,44;CL:0000133,2.43e-16,44;CL:0002319,5.01e-16,43;CL:0000117,1.02e-14,23;CL:0000337,1.02e-14,23;CL:0000393,2.24e-13,39;CL:0000211,2.24e-13,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!9.36e-36!73;UBERON:0005743!9.36e-36!73;UBERON:0004121!1.08e-34!102;UBERON:0000924!1.08e-34!102;UBERON:0006601!1.08e-34!102;UBERON:0000073!1.40e-34!75;UBERON:0001016!1.40e-34!75;UBERON:0002346!1.89e-29!71;UBERON:0003075!1.89e-29!71;UBERON:0007284!1.89e-29!71;UBERON:0001049!2.05e-27!52;UBERON:0005068!2.05e-27!52;UBERON:0006241!2.05e-27!52;UBERON:0007135!2.05e-27!52;UBERON:0000955!9.02e-26!50;UBERON:0006238!9.02e-26!50;UBERON:0000033!3.64e-25!63;UBERON:0002616!3.82e-25!49;UBERON:0003056!9.72e-22!49;UBERON:0003080!2.28e-21!40;UBERON:0002780!1.22e-20!39;UBERON:0001890!1.22e-20!39;UBERON:0006240!1.22e-20!39;UBERON:0002020!4.24e-19!34;UBERON:0007811!3.15e-17!86;UBERON:0000153!4.30e-17!94;UBERON:0002791!1.33e-15!29;UBERON:0003528!1.33e-15!29;UBERON:0001893!1.33e-15!29;UBERON:0000956!1.27e-10!21;UBERON:0001869!1.27e-10!21;UBERON:0000203!1.27e-10!21;UBERON:0002619!6.84e-09!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.93e-36,73;UBERON:0001016,9.00e-35,75;UBERON:0004121,4.12e-34,95;UBERON:0000924,4.12e-34,95;UBERON:0006601,4.12e-34,95;UBERON:0002346,1.96e-29,64;UBERON:0003075,1.96e-29,64;UBERON:0007284,1.96e-29,64;UBERON:0000073,4.20e-29,54;UBERON:0010371,1.38e-28,73;UBERON:0001049,1.45e-27,52;UBERON:0005068,1.45e-27,52;UBERON:0006241,1.45e-27,52;UBERON:0007135,1.45e-27,52;UBERON:0000955,9.17e-24,47;UBERON:0006238,9.17e-24,47;UBERON:0002616,3.81e-23,46;UBERON:0003056,7.43e-22,49;UBERON:0003080,1.75e-21,40;UBERON:0002780,9.44e-21,39;UBERON:0001890,9.44e-21,39;UBERON:0006240,9.44e-21,39;UBERON:0002020,3.36e-19,34;UBERON:0010314,2.03e-16,92;UBERON:0003528,1.11e-15,29;UBERON:0002791,1.11e-15,29;UBERON:0001893,1.11e-15,29;UBERON:0000956,1.12e-10,21;UBERON:0001869,1.12e-10,21;UBERON:0000203,1.12e-10,21;UBERON:0002619,6.21e-09,17 | |||
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| |||
|short_description=p1@Dos | |||
}} |
Latest revision as of 09:30, 26 September 2015
Short description: | p1@Dos |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Dos_5end |
Coexpression cluster: | MCL_coexpression_mm9:159 |
Association with transcript: | 0bp_to_ENSMUST00000105369, ENSMUST00000132523, ENSMUST00000147778, ENSMUST00000170219, NR_036582, uc007gbx.1_5end |
EntrezGene: | Dos |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 5.46e-17 | 33 |
neuronal stem cell | 5.46e-17 | 33 |
neuroblast | 5.46e-17 | 33 |
electrically signaling cell | 5.46e-17 | 33 |
ectodermal cell | 2.43e-16 | 44 |
neurectodermal cell | 2.43e-16 | 44 |
neural cell | 5.01e-16 | 43 |
CNS neuron (sensu Vertebrata) | 1.02e-14 | 23 |
neuroblast (sensu Vertebrata) | 1.02e-14 | 23 |
electrically responsive cell | 2.24e-13 | 39 |
electrically active cell | 2.24e-13 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 5.93e-36 | 73 |
nervous system | 9.00e-35 | 75 |
ectoderm-derived structure | 4.12e-34 | 95 |
ectoderm | 4.12e-34 | 95 |
presumptive ectoderm | 4.12e-34 | 95 |
neurectoderm | 1.96e-29 | 64 |
neural plate | 1.96e-29 | 64 |
presumptive neural plate | 1.96e-29 | 64 |
regional part of nervous system | 4.20e-29 | 54 |
ecto-epithelium | 1.38e-28 | 73 |
neural tube | 1.45e-27 | 52 |
neural rod | 1.45e-27 | 52 |
future spinal cord | 1.45e-27 | 52 |
neural keel | 1.45e-27 | 52 |
brain | 9.17e-24 | 47 |
future brain | 9.17e-24 | 47 |
regional part of brain | 3.81e-23 | 46 |
pre-chordal neural plate | 7.43e-22 | 49 |
anterior neural tube | 1.75e-21 | 40 |
regional part of forebrain | 9.44e-21 | 39 |
forebrain | 9.44e-21 | 39 |
future forebrain | 9.44e-21 | 39 |
gray matter | 3.36e-19 | 34 |
structure with developmental contribution from neural crest | 2.03e-16 | 92 |
brain grey matter | 1.11e-15 | 29 |
regional part of telencephalon | 1.11e-15 | 29 |
telencephalon | 1.11e-15 | 29 |
cerebral cortex | 1.12e-10 | 21 |
cerebral hemisphere | 1.12e-10 | 21 |
pallium | 1.12e-10 | 21 |
regional part of cerebral cortex | 6.21e-09 | 17 |