FFCP PHASE1:Mm9::chr7:30089006..30089022,+: Difference between revisions
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{{FFCP|EntrezGene=29861|HGNC=|MCL_coexpression_id=22|UniProt=Q6GTK4,Q9QX66|association_with_transcript=-1bp_to_NM_013874,uc009gbo.1_5end|description=CAGE_peak_3_at_Dpf1_5end|id=chr7:30089006..30089022,+|ontology_enrichment_celltype=CL:0000117!8.37e-13!23;CL:0000337!8.37e-13!23;CL:0002319!8.10e-11!43;CL:0000221!2.92e-10!44;CL:0000133!2.92e-10!44;CL:0000055!3.22e-09!50;CL:0000540!3.63e-08!33;CL:0000047!3.63e-08!33;CL:0000031!3.63e-08!33;CL:0000404!3.63e-08!33;CL:0000393!4.07e-07!39;CL:0000211!4.07e-07!39|ontology_enrichment_celltype_v019_2=CL:0000117,3.92e-20,23;CL:0000337,3.92e-20,23;CL:0002319,3.50e-14,43;CL:0000221,1.06e-13,44;CL:0000133,1.06e-13,44;CL:0000540,2.61e-12,33;CL:0000047,2.61e-12,33;CL:0000031,2.61e-12,33;CL:0000404,2.61e-12,33;CL:0002609,1.25e-10,6;CL:0000393,1.37e-09,39;CL:0000211,1.37e-09,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!3.70e-20!34;UBERON:0000073!1.07e-19!75;UBERON:0001016!1.07e-19!75;UBERON:0001017!1.53e-19!73;UBERON:0005743!1.53e-19!73;UBERON:0001049!1.61e-19!52;UBERON:0005068!1.61e-19!52;UBERON:0006241!1.61e-19!52;UBERON:0007135!1.61e-19!52;UBERON:0003056!6.82e-17!49;UBERON:0002791!2.22e-16!29;UBERON:0003528!2.22e-16!29;UBERON:0001893!2.22e-16!29;UBERON:0002346!2.94e-16!71;UBERON:0003075!2.94e-16!71;UBERON:0007284!2.94e-16!71;UBERON:0000955!3.11e-16!50;UBERON:0006238!3.11e-16!50;UBERON:0003080!1.07e-15!40;UBERON:0002616!1.22e-15!49;UBERON:0002780!2.07e-15!39;UBERON:0001890!2.07e-15!39;UBERON:0006240!2.07e-15!39;UBERON:0000033!3.46e-15!63;UBERON:0000956!8.82e-14!21;UBERON:0001869!8.82e-14!21;UBERON:0000203!8.82e-14!21;UBERON:0004121!2.01e-13!102;UBERON:0000924!2.01e-13!102;UBERON:0006601!2.01e-13!102;UBERON:0002619!1.00e-10!17;UBERON:0007811!3.17e-09!86;UBERON:0000153!8.73e-09!94;UBERON:0002021!4.22e-07!10;UBERON:0000411!4.22e-07!10;UBERON:0001950!4.22e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0002020,1.47e-24,34;UBERON:0001017,1.35e-20,73;UBERON:0001016,9.43e-20,75;UBERON:0000073,5.00e-19,54;UBERON:0001049,1.15e-18,52;UBERON:0005068,1.15e-18,52;UBERON:0006241,1.15e-18,52;UBERON:0007135,1.15e-18,52;UBERON:0003528,4.57e-18,29;UBERON:0002791,4.57e-18,29;UBERON:0001893,4.57e-18,29;UBERON:0002346,8.78e-17,64;UBERON:0003075,8.78e-17,64;UBERON:0007284,8.78e-17,64;UBERON:0000956,2.23e-16,21;UBERON:0001869,2.23e-16,21;UBERON:0000203,2.23e-16,21;UBERON:0004121,4.38e-16,95;UBERON:0000924,4.38e-16,95;UBERON:0006601,4.38e-16,95;UBERON:0000955,1.02e-14,47;UBERON:0006238,1.02e-14,47;UBERON:0002780,1.66e-14,39;UBERON:0001890,1.66e-14,39;UBERON:0006240,1.66e-14,39;UBERON:0003080,5.60e-14,40;UBERON:0002616,8.04e-14,46;UBERON:0010371,1.46e-13,73;UBERON:0003056,2.20e-13,49;UBERON:0002619,3.95e-11,17;UBERON:0010314,6.44e-09,92;UBERON:0002021,1.20e-08,10;UBERON:0000411,1.20e-08,10;UBERON:0001950,1.20e-08,10;UBERON:0001948,2.41e-08,5;UBERON:0002315,2.41e-08,5;UBERON:0002240,7.76e-07,6;UBERON:0005174,7.76e-07,6;UBERON:0001137,7.76e-07,6|phase1_expression=0,0,0,0,0,0.16787927191189,0,0,0.281577444303333,0,0,0,0,0,0,0,0,0,0,0,0.935476191661768,0,0,0,0,0,0,0,0,0,0,1.90509202037889,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0,0,0.183546752161682,1.56478268869608,1.52617609466313,0.878744730937887,0.58328969722285,1.25987779462826,1.43752564364972,0,0,0,0,0.286533439938757,0.515672092277442,11.5320382689971,9.52183762689659,11.4089652631112,1.0165335962074,0,0,0,0,0,1.92109152660777,12.3390638647088,10.3954572515402,9.25429829946081,4.57041575046086,3.09215957332259,10.0442455356262,9.77623804386011,11.9498442259303,0,1.27687338085188,0.307213066512487,8.04506355154182,7.22752384459036,8.85552729946492,0.279182999001381,0,0.61119299110724,5.59794312399969,4.41352210477219,10.0655700745662,0.075726193333184,0.377857800533928,0.289864488701678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230615497256059,0,0,0,0,0,0,0.161766849947409,0,0,0,0,0,0,0,0,0,0.599162557619291,0.915001205637253,12.4397808591736,2.25971616249959,2.81287003063364,1.0389402227978,1.62241263067758,0.203678727700633,0,0,0,1.04096354370163,0.689706313300419,0.900310649026746,0.452114453507145,1.02054748726992,0.896796041993948,1.12442069471675,0,0.431135985865684,0.189106080167819,1.05570674498369,0,0.278047249225598,0,0,0.199034266818493,0,0,0,0,0,0,0,0.196764231747404,0,0,0,0,0.16455984991348,0,0.0810688095458557,0,0,0.134206418760372,0.420579897128254,8.02655976558419,0,0,0,0.464473343720877,0.257734922644187,0.201683524623343,0,0,0,0,0,0,0.19496408711912,0.898819408654221,0,0,0,0.114248512609729,1.1270773567308,0,0,0,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.947457058852424,0.977789858652155,0.509235257325564,0,0.167506257441816,0,0.195133647857799,0,0,0.159454768657487,0,0.345369963731791,0,0,0,0,0,0.321101179975584,0.35163505977661,0.491804836130026,0,0.631016438832513,0,0,0,0,0,0.404810701674894,0,0.395287777946524,1.60660658210904,0.141940085208269,0.178065603667255,0.162886959353576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540183282093931,0.646793418913773,0.214337035031592,0,0.178368817602071,0.493647061806363,0,0,0,0,0,0,0,0,0,0,0.556275906031529,0,0,0.185194527369712,0,0,0.228778173206523,0,0,0.138199973804424,0,0.158167996790568,0.203319467126849,0.108005340821801,0.418176592028937,0,0,0,0,0.129614973291793,0,0,0,0.330916980914195,0.194451188344048,0.129159823477731,0.168956125490778,0.117357238645754,0.13020438484395,0.419437377702843,0.241584120826006,0.288030006257865,0,0,0.102710957164827,0.129920822977795,0.358053391334963,0,0.240390899039938,0.147689527174577,0,0.0762068066549998,0.100826185136841,0,0,0,0,0,0.0897138566094757,0,0,0,0,0,0,2.82375921308533,3.22227665555024,4.01026859407578,5.67115501734169,0.685082519770642,1.5107877947794,2.70009000092722,1.80128481289688,0.906284817968409,1.55328093525546,1.45302286617847,1.99512436700516,0.512200817262403,1.21553358534147,1.25767897576789,1.47074806760011,0.222246727801615,1.03017528619447,0.962757628775446,1.01078884705519,1.01391719956096,0.943131706930381,1.03005658216871,1.28050304809739,1.49332219284595,1.42888107384922,0.927074607558844,0.578727661391115,1.23625770240992,0.441596760403192,1.02860775715625,1.24233064311536,0.715308569841963,1.0174249164263,0.846984423737976,0.930760686808441,1.82927972872773,0.789209134313529,1.08643291076689,0.561142271657738,0.949080144993393,1.77308068276014,0.409231043169689,1.23949472948773,0.771626443924566,1.99848462350357,0.701794825336225,0.429742108096597,0.191288332068843,0,0|short_description=p3@Dpf1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=29861 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=Q6GTK4,Q9QX66 | |||
|association_with_transcript=-1bp_to_NM_013874,uc009gbo.1_5end | |||
|cluster_id=chr7:30089006..30089022,+ | |||
|description=CAGE_peak_3_at_Dpf1_5end | |||
|id=chr7:30089006..30089022,+ | |||
|ontology_enrichment_celltype=CL:0000117!8.37e-13!23;CL:0000337!8.37e-13!23;CL:0002319!8.10e-11!43;CL:0000221!2.92e-10!44;CL:0000133!2.92e-10!44;CL:0000055!3.22e-09!50;CL:0000540!3.63e-08!33;CL:0000047!3.63e-08!33;CL:0000031!3.63e-08!33;CL:0000404!3.63e-08!33;CL:0000393!4.07e-07!39;CL:0000211!4.07e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.92e-20,23;CL:0000337,3.92e-20,23;CL:0002319,3.50e-14,43;CL:0000221,1.06e-13,44;CL:0000133,1.06e-13,44;CL:0000540,2.61e-12,33;CL:0000047,2.61e-12,33;CL:0000031,2.61e-12,33;CL:0000404,2.61e-12,33;CL:0002609,1.25e-10,6;CL:0000393,1.37e-09,39;CL:0000211,1.37e-09,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!3.70e-20!34;UBERON:0000073!1.07e-19!75;UBERON:0001016!1.07e-19!75;UBERON:0001017!1.53e-19!73;UBERON:0005743!1.53e-19!73;UBERON:0001049!1.61e-19!52;UBERON:0005068!1.61e-19!52;UBERON:0006241!1.61e-19!52;UBERON:0007135!1.61e-19!52;UBERON:0003056!6.82e-17!49;UBERON:0002791!2.22e-16!29;UBERON:0003528!2.22e-16!29;UBERON:0001893!2.22e-16!29;UBERON:0002346!2.94e-16!71;UBERON:0003075!2.94e-16!71;UBERON:0007284!2.94e-16!71;UBERON:0000955!3.11e-16!50;UBERON:0006238!3.11e-16!50;UBERON:0003080!1.07e-15!40;UBERON:0002616!1.22e-15!49;UBERON:0002780!2.07e-15!39;UBERON:0001890!2.07e-15!39;UBERON:0006240!2.07e-15!39;UBERON:0000033!3.46e-15!63;UBERON:0000956!8.82e-14!21;UBERON:0001869!8.82e-14!21;UBERON:0000203!8.82e-14!21;UBERON:0004121!2.01e-13!102;UBERON:0000924!2.01e-13!102;UBERON:0006601!2.01e-13!102;UBERON:0002619!1.00e-10!17;UBERON:0007811!3.17e-09!86;UBERON:0000153!8.73e-09!94;UBERON:0002021!4.22e-07!10;UBERON:0000411!4.22e-07!10;UBERON:0001950!4.22e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,1.47e-24,34;UBERON:0001017,1.35e-20,73;UBERON:0001016,9.43e-20,75;UBERON:0000073,5.00e-19,54;UBERON:0001049,1.15e-18,52;UBERON:0005068,1.15e-18,52;UBERON:0006241,1.15e-18,52;UBERON:0007135,1.15e-18,52;UBERON:0003528,4.57e-18,29;UBERON:0002791,4.57e-18,29;UBERON:0001893,4.57e-18,29;UBERON:0002346,8.78e-17,64;UBERON:0003075,8.78e-17,64;UBERON:0007284,8.78e-17,64;UBERON:0000956,2.23e-16,21;UBERON:0001869,2.23e-16,21;UBERON:0000203,2.23e-16,21;UBERON:0004121,4.38e-16,95;UBERON:0000924,4.38e-16,95;UBERON:0006601,4.38e-16,95;UBERON:0000955,1.02e-14,47;UBERON:0006238,1.02e-14,47;UBERON:0002780,1.66e-14,39;UBERON:0001890,1.66e-14,39;UBERON:0006240,1.66e-14,39;UBERON:0003080,5.60e-14,40;UBERON:0002616,8.04e-14,46;UBERON:0010371,1.46e-13,73;UBERON:0003056,2.20e-13,49;UBERON:0002619,3.95e-11,17;UBERON:0010314,6.44e-09,92;UBERON:0002021,1.20e-08,10;UBERON:0000411,1.20e-08,10;UBERON:0001950,1.20e-08,10;UBERON:0001948,2.41e-08,5;UBERON:0002315,2.41e-08,5;UBERON:0002240,7.76e-07,6;UBERON:0005174,7.76e-07,6;UBERON:0001137,7.76e-07,6 | |||
|phase1_expression=0,0,0,0,0,0.16787927191189,0,0,0.281577444303333,0,0,0,0,0,0,0,0,0,0,0,0.935476191661768,0,0,0,0,0,0,0,0,0,0,1.90509202037889,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0,0,0.183546752161682,1.56478268869608,1.52617609466313,0.878744730937887,0.58328969722285,1.25987779462826,1.43752564364972,0,0,0,0,0.286533439938757,0.515672092277442,11.5320382689971,9.52183762689659,11.4089652631112,1.0165335962074,0,0,0,0,0,1.92109152660777,12.3390638647088,10.3954572515402,9.25429829946081,4.57041575046086,3.09215957332259,10.0442455356262,9.77623804386011,11.9498442259303,0,1.27687338085188,0.307213066512487,8.04506355154182,7.22752384459036,8.85552729946492,0.279182999001381,0,0.61119299110724,5.59794312399969,4.41352210477219,10.0655700745662,0.075726193333184,0.377857800533928,0.289864488701678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230615497256059,0,0,0,0,0,0,0.161766849947409,0,0,0,0,0,0,0,0,0,0.599162557619291,0.915001205637253,12.4397808591736,2.25971616249959,2.81287003063364,1.0389402227978,1.62241263067758,0.203678727700633,0,0,0,1.04096354370163,0.689706313300419,0.900310649026746,0.452114453507145,1.02054748726992,0.896796041993948,1.12442069471675,0,0.431135985865684,0.189106080167819,1.05570674498369,0,0.278047249225598,0,0,0.199034266818493,0,0,0,0,0,0,0,0.196764231747404,0,0,0,0,0.16455984991348,0,0.0810688095458557,0,0,0.134206418760372,0.420579897128254,8.02655976558419,0,0,0,0.464473343720877,0.257734922644187,0.201683524623343,0,0,0,0,0,0,0.19496408711912,0.898819408654221,0,0,0,0.114248512609729,1.1270773567308,0,0,0,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.947457058852424,0.977789858652155,0.509235257325564,0,0.167506257441816,0,0.195133647857799,0,0,0.159454768657487,0,0.345369963731791,0,0,0,0,0,0.321101179975584,0.35163505977661,0.491804836130026,0,0.631016438832513,0,0,0,0,0,0.404810701674894,0,0.395287777946524,1.60660658210904,0.141940085208269,0.178065603667255,0.162886959353576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540183282093931,0.646793418913773,0.214337035031592,0,0.178368817602071,0.493647061806363,0,0,0,0,0,0,0,0,0,0,0.556275906031529,0,0,0.185194527369712,0,0,0.228778173206523,0,0,0.138199973804424,0,0.158167996790568,0.203319467126849,0.108005340821801,0.418176592028937,0,0,0,0,0.129614973291793,0,0,0,0.330916980914195,0.194451188344048,0.129159823477731,0.168956125490778,0.117357238645754,0.13020438484395,0.419437377702843,0.241584120826006,0.288030006257865,0,0,0.102710957164827,0.129920822977795,0.358053391334963,0,0.240390899039938,0.147689527174577,0,0.0762068066549998,0.100826185136841,0,0,0,0,0,0.0897138566094757,0,0,0,0,0,0,2.82375921308533,3.22227665555024,4.01026859407578,5.67115501734169,0.685082519770642,1.5107877947794,2.70009000092722,1.80128481289688,0.906284817968409,1.55328093525546,1.45302286617847,1.99512436700516,0.512200817262403,1.21553358534147,1.25767897576789,1.47074806760011,0.222246727801615,1.03017528619447,0.962757628775446,1.01078884705519,1.01391719956096,0.943131706930381,1.03005658216871,1.28050304809739,1.49332219284595,1.42888107384922,0.927074607558844,0.578727661391115,1.23625770240992,0.441596760403192,1.02860775715625,1.24233064311536,0.715308569841963,1.0174249164263,0.846984423737976,0.930760686808441,1.82927972872773,0.789209134313529,1.08643291076689,0.561142271657738,0.949080144993393,1.77308068276014,0.409231043169689,1.23949472948773,0.771626443924566,1.99848462350357,0.701794825336225,0.429742108096597,0.191288332068843,0,0 | |||
|short_description=p3@Dpf1 | |||
}} |
Latest revision as of 13:54, 26 September 2015
Short description: | p3@Dpf1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Dpf1_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | -1bp_to_NM_013874, uc009gbo.1_5end |
EntrezGene: | Dpf1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.92e-20 | 23 |
neuroblast (sensu Vertebrata) | 3.92e-20 | 23 |
neural cell | 3.50e-14 | 43 |
ectodermal cell | 1.06e-13 | 44 |
neurectodermal cell | 1.06e-13 | 44 |
neuron | 2.61e-12 | 33 |
neuronal stem cell | 2.61e-12 | 33 |
neuroblast | 2.61e-12 | 33 |
electrically signaling cell | 2.61e-12 | 33 |
neuron of cerebral cortex | 1.25e-10 | 6 |
electrically responsive cell | 1.37e-09 | 39 |
electrically active cell | 1.37e-09 | 39 |