FFCP PHASE1:Mm9::chr17:56279756..56279807,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=20359 | |EntrezGene=20359 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=O54951,Q3UTK5 | |UniProt=O54951,Q3UTK5 | ||
|association_with_transcript=0bp_to_ENSMUST00000001256,NM_001130456,uc008dbe.1_5end | |association_with_transcript=0bp_to_ENSMUST00000001256,NM_001130456,uc008dbe.1_5end | ||
|cluster_id=chr17:56279756..56279807,- | |||
|description=CAGE_peak_1_at_Sema6b_5end | |description=CAGE_peak_1_at_Sema6b_5end | ||
|id=chr17:56279756..56279807,- | |id=chr17:56279756..56279807,- | ||
|ontology_enrichment_celltype=CL:0000221!5.12e-14!44;CL:0000133!5.12e-14!44;CL:0002319!1.37e-13!43;CL:0000117!1.42e-13!23;CL:0000337!1.42e-13!23;CL:0000540!2.65e-12!33;CL:0000047!2.65e-12!33;CL:0000031!2.65e-12!33;CL:0000404!2.65e-12!33;CL:0000055!1.71e-09!50;CL:0000393!3.12e-08!39;CL:0000211!3.12e-08!39 | |ontology_enrichment_celltype=CL:0000221!5.12e-14!44;CL:0000133!5.12e-14!44;CL:0002319!1.37e-13!43;CL:0000117!1.42e-13!23;CL:0000337!1.42e-13!23;CL:0000540!2.65e-12!33;CL:0000047!2.65e-12!33;CL:0000031!2.65e-12!33;CL:0000404!2.65e-12!33;CL:0000055!1.71e-09!50;CL:0000393!3.12e-08!39;CL:0000211!3.12e-08!39 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.22e-14,23;CL:0000337,1.22e-14,23;CL:0000221,1.54e-14,44;CL:0000133,1.54e-14,44;CL:0002319,4.45e-14,43;CL:0000540,1.22e-12,33;CL:0000047,1.22e-12,33;CL:0000031,1.22e-12,33;CL:0000404,1.22e-12,33;CL:0000393,2.06e-08,39;CL:0000211,2.06e-08,39 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.99e-31!73;UBERON:0005743!1.99e-31!73;UBERON:0000073!3.88e-31!75;UBERON:0001016!3.88e-31!75;UBERON:0004121!5.04e-28!102;UBERON:0000924!5.04e-28!102;UBERON:0006601!5.04e-28!102;UBERON:0001049!2.23e-26!52;UBERON:0005068!2.23e-26!52;UBERON:0006241!2.23e-26!52;UBERON:0007135!2.23e-26!52;UBERON:0002346!4.46e-26!71;UBERON:0003075!4.46e-26!71;UBERON:0007284!4.46e-26!71;UBERON:0000955!1.94e-25!50;UBERON:0006238!1.94e-25!50;UBERON:0000033!2.85e-25!63;UBERON:0002616!6.79e-25!49;UBERON:0003056!4.37e-21!49;UBERON:0003080!8.57e-21!40;UBERON:0002020!2.67e-20!34;UBERON:0002780!3.46e-20!39;UBERON:0001890!3.46e-20!39;UBERON:0006240!3.46e-20!39;UBERON:0002791!1.66e-17!29;UBERON:0003528!1.66e-17!29;UBERON:0001893!1.66e-17!29;UBERON:0000153!5.01e-15!94;UBERON:0007811!1.77e-14!86;UBERON:0000956!1.11e-12!21;UBERON:0001869!1.11e-12!21;UBERON:0000203!1.11e-12!21;UBERON:0002619!1.00e-10!17;UBERON:0002021!6.45e-08!10;UBERON:0000411!6.45e-08!10;UBERON:0001950!6.45e-08!10;UBERON:0000468!5.53e-07!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.34e-33,73;UBERON:0001016,4.74e-33,75;UBERON:0000073,2.70e-30,54;UBERON:0001049,1.38e-28,52;UBERON:0005068,1.38e-28,52;UBERON:0006241,1.38e-28,52;UBERON:0007135,1.38e-28,52;UBERON:0004121,1.56e-28,95;UBERON:0000924,1.56e-28,95;UBERON:0006601,1.56e-28,95;UBERON:0002346,2.63e-27,64;UBERON:0003075,2.63e-27,64;UBERON:0007284,2.63e-27,64;UBERON:0000955,2.53e-25,47;UBERON:0006238,2.53e-25,47;UBERON:0002616,9.64e-25,46;UBERON:0010371,9.85e-24,73;UBERON:0003056,8.05e-23,49;UBERON:0003080,1.68e-22,40;UBERON:0002020,5.78e-22,34;UBERON:0002780,7.66e-22,39;UBERON:0001890,7.66e-22,39;UBERON:0006240,7.66e-22,39;UBERON:0003528,6.39e-19,29;UBERON:0002791,6.39e-19,29;UBERON:0001893,6.39e-19,29;UBERON:0010314,3.28e-17,92;UBERON:0000956,1.15e-13,21;UBERON:0001869,1.15e-13,21;UBERON:0000203,1.15e-13,21;UBERON:0002619,1.54e-11,17;UBERON:0002021,1.76e-08,10;UBERON:0000411,1.76e-08,10;UBERON:0001950,1.76e-08,10 | |||
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| ||
|short_description=p1@Sema6b | |short_description=p1@Sema6b | ||
}} | }} |
Latest revision as of 16:59, 26 September 2015
Short description: | p1@Sema6b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Sema6b_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000001256, NM_001130456, uc008dbe.1_5end |
EntrezGene: | Sema6b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.22e-14 | 23 |
neuroblast (sensu Vertebrata) | 1.22e-14 | 23 |
ectodermal cell | 1.54e-14 | 44 |
neurectodermal cell | 1.54e-14 | 44 |
neural cell | 4.45e-14 | 43 |
neuron | 1.22e-12 | 33 |
neuronal stem cell | 1.22e-12 | 33 |
neuroblast | 1.22e-12 | 33 |
electrically signaling cell | 1.22e-12 | 33 |
electrically responsive cell | 2.06e-08 | 39 |
electrically active cell | 2.06e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.34e-33 | 73 |
nervous system | 4.74e-33 | 75 |
regional part of nervous system | 2.70e-30 | 54 |
neural tube | 1.38e-28 | 52 |
neural rod | 1.38e-28 | 52 |
future spinal cord | 1.38e-28 | 52 |
neural keel | 1.38e-28 | 52 |
ectoderm-derived structure | 1.56e-28 | 95 |
ectoderm | 1.56e-28 | 95 |
presumptive ectoderm | 1.56e-28 | 95 |
neurectoderm | 2.63e-27 | 64 |
neural plate | 2.63e-27 | 64 |
presumptive neural plate | 2.63e-27 | 64 |
brain | 2.53e-25 | 47 |
future brain | 2.53e-25 | 47 |
regional part of brain | 9.64e-25 | 46 |
ecto-epithelium | 9.85e-24 | 73 |
pre-chordal neural plate | 8.05e-23 | 49 |
anterior neural tube | 1.68e-22 | 40 |
gray matter | 5.78e-22 | 34 |
regional part of forebrain | 7.66e-22 | 39 |
forebrain | 7.66e-22 | 39 |
future forebrain | 7.66e-22 | 39 |
brain grey matter | 6.39e-19 | 29 |
regional part of telencephalon | 6.39e-19 | 29 |
telencephalon | 6.39e-19 | 29 |
structure with developmental contribution from neural crest | 3.28e-17 | 92 |
cerebral cortex | 1.15e-13 | 21 |
cerebral hemisphere | 1.15e-13 | 21 |
pallium | 1.15e-13 | 21 |
regional part of cerebral cortex | 1.54e-11 | 17 |
occipital lobe | 1.76e-08 | 10 |
visual cortex | 1.76e-08 | 10 |
neocortex | 1.76e-08 | 10 |