FFCP PHASE1:Mm9::chr2:49474797..49474863,+: Difference between revisions
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{{FFCP|EntrezGene=16574|HGNC=|MCL_coexpression_id=1|UniProt=P28738|association_with_transcript=0bp_to_ENSMUST00000028102,NM_008449,uc008jpy.1_5end|description=CAGE_peak_1_at_Kif5c_5end|id=chr2:49474797..49474863,+|ontology_enrichment_celltype=CL:0000540!6.25e-15!33;CL:0000047!6.25e-15!33;CL:0000031!6.25e-15!33;CL:0000404!6.25e-15!33;CL:0000117!7.83e-13!23;CL:0000337!7.83e-13!23;CL:0000221!5.75e-12!44;CL:0000133!5.75e-12!44;CL:0002319!8.44e-12!43;CL:0000393!2.43e-10!39;CL:0000211!2.43e-10!39;CL:0000055!3.52e-08!50|ontology_enrichment_celltype_v019_2=CL:0000540,1.27e-15,33;CL:0000047,1.27e-15,33;CL:0000031,1.27e-15,33;CL:0000404,1.27e-15,33;CL:0000117,2.04e-13,23;CL:0000337,2.04e-13,23;CL:0000221,7.41e-13,44;CL:0000133,7.41e-13,44;CL:0002319,1.11e-12,43;CL:0000393,3.15e-11,39;CL:0000211,3.15e-11,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!8.28e-30!73;UBERON:0005743!8.28e-30!73;UBERON:0000073!9.21e-30!75;UBERON:0001016!9.21e-30!75;UBERON:0002346!3.77e-29!71;UBERON:0003075!3.77e-29!71;UBERON:0007284!3.77e-29!71;UBERON:0004121!2.16e-28!102;UBERON:0000924!2.16e-28!102;UBERON:0006601!2.16e-28!102;UBERON:0000033!4.50e-26!63;UBERON:0001049!1.09e-24!52;UBERON:0005068!1.09e-24!52;UBERON:0006241!1.09e-24!52;UBERON:0007135!1.09e-24!52;UBERON:0000955!1.20e-23!50;UBERON:0006238!1.20e-23!50;UBERON:0002616!3.71e-23!49;UBERON:0003056!5.92e-23!49;UBERON:0003080!4.81e-20!40;UBERON:0002780!1.87e-19!39;UBERON:0001890!1.87e-19!39;UBERON:0006240!1.87e-19!39;UBERON:0002020!4.36e-19!34;UBERON:0002791!1.62e-16!29;UBERON:0003528!1.62e-16!29;UBERON:0001893!1.62e-16!29;UBERON:0000153!5.87e-15!94;UBERON:0007811!1.11e-14!86;UBERON:0000956!4.46e-12!21;UBERON:0001869!4.46e-12!21;UBERON:0000203!4.46e-12!21;UBERON:0002619!5.03e-10!17;UBERON:0002021!4.41e-08!10;UBERON:0000411!4.41e-08!10;UBERON:0001950!4.41e-08!10;UBERON:0000468!7.28e-07!333|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.60e-32,73;UBERON:0001016,1.09e-31,75;UBERON:0002346,2.16e-30,64;UBERON:0003075,2.16e-30,64;UBERON:0007284,2.16e-30,64;UBERON:0004121,1.15e-28,95;UBERON:0000924,1.15e-28,95;UBERON:0006601,1.15e-28,95;UBERON:0000073,1.79e-27,54;UBERON:0001049,3.94e-26,52;UBERON:0005068,3.94e-26,52;UBERON:0006241,3.94e-26,52;UBERON:0007135,3.94e-26,52;UBERON:0003056,4.58e-24,49;UBERON:0010371,5.66e-24,73;UBERON:0000955,5.31e-23,47;UBERON:0006238,5.31e-23,47;UBERON:0002616,1.70e-22,46;UBERON:0003080,5.28e-21,40;UBERON:0002780,2.20e-20,39;UBERON:0001890,2.20e-20,39;UBERON:0006240,2.20e-20,39;UBERON:0002020,5.38e-20,34;UBERON:0010314,3.41e-19,92;UBERON:0003528,2.71e-17,29;UBERON:0002791,2.71e-17,29;UBERON:0001893,2.71e-17,29;UBERON:0000956,1.27e-12,21;UBERON:0001869,1.27e-12,21;UBERON:0000203,1.27e-12,21;UBERON:0002619,1.83e-10,17;UBERON:0002021,2.02e-08,10;UBERON:0000411,2.02e-08,10;UBERON:0001950,2.02e-08,10|phase1_expression=21.6200943591472,0,0.454999239389536,0,0,0.16787927191189,0.233612640595526,5.81054955487093,2.25261955442667,4.68129052643987,0.513653904676515,1.03703806693937,0.856003649656029,1.66098764596095,0,0.202475267389826,0,0.157731082679119,0.274228867211478,0,51.2811039610951,0,0,0,0.22940928106717,0,0,0,0,0,0.443461021310609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.1047043786525,4.39372365468944,6.9994763666742,1.25987779462826,0,0,0.725362142011344,3.02484419228218,1.28629718017973,0.286533439938757,2.06268836910977,197.460865798967,160.813257698698,168.599153332644,0,1.77858959222228,0,0.988866362566974,0.7104801149461,2.99600110518405,4.61061966385865,132.515324530234,115.565083211927,123.25042735191,102.263052416562,90.1143647082583,116.366259254206,96.1330074312911,91.0026598743921,180.590044838997,220.77140754929,229.027341085059,201.654133939466,183.432725422831,199.509820923239,147.966989470732,143.504465558078,167.619677811161,156.447778886518,177.537485956481,187.890641391903,5.37655972665607,8.01058537131927,0.869593466105033,0.860423876981386,0,0.539703191637817,0,0,8.70755404816862,0.340860645156116,0,0,21.2673563862788,0,0,0,0,0,0,8.5637909789295,2.33044095282455,6.53145411885229,12.6644288539279,18.8768596553528,12.2226213545711,17.4838263041042,16.8151851204058,2.89033160058254,8.65182387070309,2.60278842455841,0,1.29413479957927,0.220841518460394,0,1.86391761218122,240.958595940503,280.449140423216,2.04365644166873,0,0,0.127070227073065,189.185577568291,261.690344812254,191.622886972118,286.983952637448,354.165908402508,182.230115078734,218.53898135227,5.80484373946803,0.870848794270651,1.76905930903572,11.5743020737561,18.9975846725547,26.6686441142829,34.3918667928217,38.5804333659431,49.4625348830154,45.9928255822611,49.9430191903355,38.2880988693743,10.3472636607764,14.9393803332577,12.3165786914764,5.47989331068937,4.44875598760957,2.43776516565517,2.46938563689532,2.58744546864041,0,0,0,1.65700618028402,1.17263029990548,0.900310307305074,2.3674473558521,0.983821158737019,1.3884040159864,0.697601834251224,0.268273401399619,0.817357396570186,0.822799249567402,0.492502392237286,0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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=16574 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=P28738 | |||
|association_with_transcript=0bp_to_ENSMUST00000028102,NM_008449,uc008jpy.1_5end | |||
|cluster_id=chr2:49474797..49474863,+ | |||
|description=CAGE_peak_1_at_Kif5c_5end | |||
|id=chr2:49474797..49474863,+ | |||
|ontology_enrichment_celltype=CL:0000540!6.25e-15!33;CL:0000047!6.25e-15!33;CL:0000031!6.25e-15!33;CL:0000404!6.25e-15!33;CL:0000117!7.83e-13!23;CL:0000337!7.83e-13!23;CL:0000221!5.75e-12!44;CL:0000133!5.75e-12!44;CL:0002319!8.44e-12!43;CL:0000393!2.43e-10!39;CL:0000211!2.43e-10!39;CL:0000055!3.52e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.27e-15,33;CL:0000047,1.27e-15,33;CL:0000031,1.27e-15,33;CL:0000404,1.27e-15,33;CL:0000117,2.04e-13,23;CL:0000337,2.04e-13,23;CL:0000221,7.41e-13,44;CL:0000133,7.41e-13,44;CL:0002319,1.11e-12,43;CL:0000393,3.15e-11,39;CL:0000211,3.15e-11,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!8.28e-30!73;UBERON:0005743!8.28e-30!73;UBERON:0000073!9.21e-30!75;UBERON:0001016!9.21e-30!75;UBERON:0002346!3.77e-29!71;UBERON:0003075!3.77e-29!71;UBERON:0007284!3.77e-29!71;UBERON:0004121!2.16e-28!102;UBERON:0000924!2.16e-28!102;UBERON:0006601!2.16e-28!102;UBERON:0000033!4.50e-26!63;UBERON:0001049!1.09e-24!52;UBERON:0005068!1.09e-24!52;UBERON:0006241!1.09e-24!52;UBERON:0007135!1.09e-24!52;UBERON:0000955!1.20e-23!50;UBERON:0006238!1.20e-23!50;UBERON:0002616!3.71e-23!49;UBERON:0003056!5.92e-23!49;UBERON:0003080!4.81e-20!40;UBERON:0002780!1.87e-19!39;UBERON:0001890!1.87e-19!39;UBERON:0006240!1.87e-19!39;UBERON:0002020!4.36e-19!34;UBERON:0002791!1.62e-16!29;UBERON:0003528!1.62e-16!29;UBERON:0001893!1.62e-16!29;UBERON:0000153!5.87e-15!94;UBERON:0007811!1.11e-14!86;UBERON:0000956!4.46e-12!21;UBERON:0001869!4.46e-12!21;UBERON:0000203!4.46e-12!21;UBERON:0002619!5.03e-10!17;UBERON:0002021!4.41e-08!10;UBERON:0000411!4.41e-08!10;UBERON:0001950!4.41e-08!10;UBERON:0000468!7.28e-07!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.60e-32,73;UBERON:0001016,1.09e-31,75;UBERON:0002346,2.16e-30,64;UBERON:0003075,2.16e-30,64;UBERON:0007284,2.16e-30,64;UBERON:0004121,1.15e-28,95;UBERON:0000924,1.15e-28,95;UBERON:0006601,1.15e-28,95;UBERON:0000073,1.79e-27,54;UBERON:0001049,3.94e-26,52;UBERON:0005068,3.94e-26,52;UBERON:0006241,3.94e-26,52;UBERON:0007135,3.94e-26,52;UBERON:0003056,4.58e-24,49;UBERON:0010371,5.66e-24,73;UBERON:0000955,5.31e-23,47;UBERON:0006238,5.31e-23,47;UBERON:0002616,1.70e-22,46;UBERON:0003080,5.28e-21,40;UBERON:0002780,2.20e-20,39;UBERON:0001890,2.20e-20,39;UBERON:0006240,2.20e-20,39;UBERON:0002020,5.38e-20,34;UBERON:0010314,3.41e-19,92;UBERON:0003528,2.71e-17,29;UBERON:0002791,2.71e-17,29;UBERON:0001893,2.71e-17,29;UBERON:0000956,1.27e-12,21;UBERON:0001869,1.27e-12,21;UBERON:0000203,1.27e-12,21;UBERON:0002619,1.83e-10,17;UBERON:0002021,2.02e-08,10;UBERON:0000411,2.02e-08,10;UBERON:0001950,2.02e-08,10 | |||
|phase1_expression=21.6200943591472,0,0.454999239389536,0,0,0.16787927191189,0.233612640595526,5.81054955487093,2.25261955442667,4.68129052643987,0.513653904676515,1.03703806693937,0.856003649656029,1.66098764596095,0,0.202475267389826,0,0.157731082679119,0.274228867211478,0,51.2811039610951,0,0,0,0.22940928106717,0,0,0,0,0,0.443461021310609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.1047043786525,4.39372365468944,6.9994763666742,1.25987779462826,0,0,0.725362142011344,3.02484419228218,1.28629718017973,0.286533439938757,2.06268836910977,197.460865798967,160.813257698698,168.599153332644,0,1.77858959222228,0,0.988866362566974,0.7104801149461,2.99600110518405,4.61061966385865,132.515324530234,115.565083211927,123.25042735191,102.263052416562,90.1143647082583,116.366259254206,96.1330074312911,91.0026598743921,180.590044838997,220.77140754929,229.027341085059,201.654133939466,183.432725422831,199.509820923239,147.966989470732,143.504465558078,167.619677811161,156.447778886518,177.537485956481,187.890641391903,5.37655972665607,8.01058537131927,0.869593466105033,0.860423876981386,0,0.539703191637817,0,0,8.70755404816862,0.340860645156116,0,0,21.2673563862788,0,0,0,0,0,0,8.5637909789295,2.33044095282455,6.53145411885229,12.6644288539279,18.8768596553528,12.2226213545711,17.4838263041042,16.8151851204058,2.89033160058254,8.65182387070309,2.60278842455841,0,1.29413479957927,0.220841518460394,0,1.86391761218122,240.958595940503,280.449140423216,2.04365644166873,0,0,0.127070227073065,189.185577568291,261.690344812254,191.622886972118,286.983952637448,354.165908402508,182.230115078734,218.53898135227,5.80484373946803,0.870848794270651,1.76905930903572,11.5743020737561,18.9975846725547,26.6686441142829,34.3918667928217,38.5804333659431,49.4625348830154,45.9928255822611,49.9430191903355,38.2880988693743,10.3472636607764,14.9393803332577,12.3165786914764,5.47989331068937,4.44875598760957,2.43776516565517,2.46938563689532,2.58744546864041,0,0,0,1.65700618028402,1.17263029990548,0.900310307305074,2.3674473558521,0.983821158737019,1.3884040159864,0.697601834251224,0.268273401399619,0.817357396570186,0.822799249567402,0.492502392237286,0.729619285912702,0.877199924551994,0.219550115291051,0.805238512562231,220.383866095205,221.759439677358,1.65209391491899,0.528901133327089,7.25180051819795,8.59275685883622,7.7320476793256,7.26060688644033,5.55945109612176,6.08722003560189,0.949058123089023,3.45867804920423,4.27269854960458,2.98434708061726,2.53453313254856,0,1.94524244887225,1.1948476395262,2.46568271239006,8.91138398355885,6.76246414038483,4.2766778847516,3.29719228184964,5.40045813155453,0.569128834118316,0.442830443938806,0.156998727841375,0.863780147452604,0,0.667380422864376,1.37591296579242,0,0,0.241177159752417,0,0,0,0,0,0,0,0,0,0,0.554259570499814,3.97931964718018,1.30371981153621,0.509235257325564,0.938760993154008,0.670025029767263,1.19021820443007,0.780534591431195,0,0.221464689648775,0.318909537314974,0.655453258862952,0.518054945597687,0.433947175744535,0,0,0,0.551873492609465,205.02310341441,198.087750340823,0,0.252470927204373,25.5561657727168,20.6932534477218,38.9916349896366,13.3822526853429,22.057068734157,31.1384183867716,26.717506310543,33.0249119439782,44.6675189079572,55.5885877409726,3.40656204499845,3.20518086601059,6.67836533349662,8.74341651754438,9.2921596837974,1.45668381692989,1.81394134178851,1.32023555829129,0.885905678642318,1.84461088766356,2.58428293168221,3.27180356529755,2.85197902707777,1.58018378967908,1.05418608574999,2.06271086496374,78.3011093233712,22.5076367539138,9.70190128370659,15.8609405923378,24.4729522426338,34.4251817971996,45.2509806655833,27.0973804711993,1.87737366450968,8.68511490541663,3.08739757276947,0.8244312647074,0.645857706783622,0.301564624640779,0.238744688006273,0,1.7488850197791,235.860984157368,0.854354403989263,0.206386867963223,0.185194527369712,0.376736914009382,0.136694227721025,0.228778173206523,0.849892149969277,1.6794174278839,1.24379976423981,1.90934123603023,8.69923982348122,8.53941761932765,6.26430976766447,4.18176592028937,5.02233896616208,3.64133735239016,5.86839535649885,1.04702376793612,2.72191443912765,1.24267862617385,2.25477175473676,0.747582730219894,1.82004339502807,1.36115831840833,1.93739735216597,3.37912250981556,3.99014611395563,6.64042362704146,10.2762157537197,3.62376181239009,2.59227005632079,0.948033361884535,3.44632865993279,1.43795340030758,0.51968329191118,0.179026695667481,1.19208812868759,0.600977247599844,0.443068581523732,0.706765149637033,0.685861259894999,0.806609481094724,0.877120926657772,0.577271049841977,0.935015217452552,1.36038230169127,5.77163478772568,0.986852422704233,1.51096154727671,1.9318959403219,8.25802891985201,19.5972237965974,2.14368379079066,1.50471631210609,281.811169465916,300.592379439187,289.885129800335,221.003192493982,291.845153422294,321.042406390623,291.60972010014,256.232764634581,293.636281021765,267.682081175691,31.7589283607581,51.474208668733,37.3906596601554,26.9848455945806,35.843850809385,40.62941536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| |||
|short_description=p1@Kif5c | |||
}} |
Latest revision as of 18:08, 26 September 2015
Short description: | p1@Kif5c |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Kif5c_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000028102, NM_008449, uc008jpy.1_5end |
EntrezGene: | Kif5c |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.27e-15 | 33 |
neuronal stem cell | 1.27e-15 | 33 |
neuroblast | 1.27e-15 | 33 |
electrically signaling cell | 1.27e-15 | 33 |
CNS neuron (sensu Vertebrata) | 2.04e-13 | 23 |
neuroblast (sensu Vertebrata) | 2.04e-13 | 23 |
ectodermal cell | 7.41e-13 | 44 |
neurectodermal cell | 7.41e-13 | 44 |
neural cell | 1.11e-12 | 43 |
electrically responsive cell | 3.15e-11 | 39 |
electrically active cell | 3.15e-11 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 9.60e-32 | 73 |
nervous system | 1.09e-31 | 75 |
neurectoderm | 2.16e-30 | 64 |
neural plate | 2.16e-30 | 64 |
presumptive neural plate | 2.16e-30 | 64 |
ectoderm-derived structure | 1.15e-28 | 95 |
ectoderm | 1.15e-28 | 95 |
presumptive ectoderm | 1.15e-28 | 95 |
regional part of nervous system | 1.79e-27 | 54 |
neural tube | 3.94e-26 | 52 |
neural rod | 3.94e-26 | 52 |
future spinal cord | 3.94e-26 | 52 |
neural keel | 3.94e-26 | 52 |
pre-chordal neural plate | 4.58e-24 | 49 |
ecto-epithelium | 5.66e-24 | 73 |
brain | 5.31e-23 | 47 |
future brain | 5.31e-23 | 47 |
regional part of brain | 1.70e-22 | 46 |
anterior neural tube | 5.28e-21 | 40 |
regional part of forebrain | 2.20e-20 | 39 |
forebrain | 2.20e-20 | 39 |
future forebrain | 2.20e-20 | 39 |
gray matter | 5.38e-20 | 34 |
structure with developmental contribution from neural crest | 3.41e-19 | 92 |
brain grey matter | 2.71e-17 | 29 |
regional part of telencephalon | 2.71e-17 | 29 |
telencephalon | 2.71e-17 | 29 |
cerebral cortex | 1.27e-12 | 21 |
cerebral hemisphere | 1.27e-12 | 21 |
pallium | 1.27e-12 | 21 |
regional part of cerebral cortex | 1.83e-10 | 17 |
occipital lobe | 2.02e-08 | 10 |
visual cortex | 2.02e-08 | 10 |
neocortex | 2.02e-08 | 10 |