FFCP PHASE1:Mm9::chr17:70318701..70318718,+: Difference between revisions
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{{FFCP|EntrezGene=224997|HGNC=|MCL_coexpression_id=1|UniProt=Q9D415,D3Z709,Q3UHD8|association_with_transcript=0bp_to_ENSMUST00000125691,ENSMUST00000150798,ENSMUST00000155823,uc008dky.1,uc008dkz.1,uc008dla.1,uc008dlb.2,uc008dlc.2,uc008dld.2_5end|description=CAGE_peak_3_at_Dlgap1_5end|id=chr17:70318701..70318718,+|ontology_enrichment_celltype=CL:0000540!1.85e-15!33;CL:0000047!1.85e-15!33;CL:0000031!1.85e-15!33;CL:0000404!1.85e-15!33;CL:0000221!2.86e-12!44;CL:0000133!2.86e-12!44;CL:0002319!3.50e-12!43;CL:0000117!2.14e-11!23;CL:0000337!2.14e-11!23;CL:0000393!8.41e-11!39;CL:0000211!8.41e-11!39;CL:0000055!8.23e-09!50|ontology_enrichment_celltype_v019_2=CL:0000540,4.08e-18,33;CL:0000047,4.08e-18,33;CL:0000031,4.08e-18,33;CL:0000404,4.08e-18,33;CL:0000393,9.42e-14,39;CL:0000211,9.42e-14,39;CL:0000117,2.83e-13,23;CL:0000337,2.83e-13,23;CL:0000221,3.66e-12,44;CL:0000133,3.66e-12,44;CL:0002319,4.80e-12,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!1.22e-27!71;UBERON:0003075!1.22e-27!71;UBERON:0007284!1.22e-27!71;UBERON:0004121!1.43e-26!102;UBERON:0000924!1.43e-26!102;UBERON:0006601!1.43e-26!102;UBERON:0001017!2.62e-26!73;UBERON:0005743!2.62e-26!73;UBERON:0000073!8.58e-26!75;UBERON:0001016!8.58e-26!75;UBERON:0001049!3.77e-20!52;UBERON:0005068!3.77e-20!52;UBERON:0006241!3.77e-20!52;UBERON:0007135!3.77e-20!52;UBERON:0000955!3.44e-19!50;UBERON:0006238!3.44e-19!50;UBERON:0000033!4.58e-19!63;UBERON:0002616!1.91e-18!49;UBERON:0002020!4.83e-18!34;UBERON:0003056!5.45e-16!49;UBERON:0002791!4.90e-15!29;UBERON:0003528!4.90e-15!29;UBERON:0001893!4.90e-15!29;UBERON:0003080!1.36e-14!40;UBERON:0002780!3.92e-14!39;UBERON:0001890!3.92e-14!39;UBERON:0006240!3.92e-14!39;UBERON:0000956!1.86e-11!21;UBERON:0001869!1.86e-11!21;UBERON:0000203!1.86e-11!21;UBERON:0002619!1.01e-09!17;UBERON:0000468!4.80e-08!333;UBERON:0002021!1.98e-07!10;UBERON:0000411!1.98e-07!10;UBERON:0001950!1.98e-07!10;UBERON:0007811!2.07e-07!86|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.04e-26,73;UBERON:0001016,5.56e-25,75;UBERON:0002346,1.50e-21,64;UBERON:0003075,1.50e-21,64;UBERON:0007284,1.50e-21,64;UBERON:0000073,1.42e-20,54;UBERON:0002020,1.69e-20,34;UBERON:0004121,2.13e-20,95;UBERON:0000924,2.13e-20,95;UBERON:0006601,2.13e-20,95;UBERON:0001049,4.98e-19,52;UBERON:0005068,4.98e-19,52;UBERON:0006241,4.98e-19,52;UBERON:0007135,4.98e-19,52;UBERON:0010371,2.03e-17,73;UBERON:0003528,6.18e-17,29;UBERON:0002791,6.18e-17,29;UBERON:0001893,6.18e-17,29;UBERON:0010314,3.84e-16,92;UBERON:0000955,6.57e-16,47;UBERON:0006238,6.57e-16,47;UBERON:0002616,4.09e-15,46;UBERON:0003056,1.93e-14,49;UBERON:0003080,8.36e-14,40;UBERON:0002780,2.78e-13,39;UBERON:0001890,2.78e-13,39;UBERON:0006240,2.78e-13,39;UBERON:0000956,1.13e-12,21;UBERON:0001869,1.13e-12,21;UBERON:0000203,1.13e-12,21;UBERON:0002619,1.32e-10,17;UBERON:0002021,1.49e-08,10;UBERON:0000411,1.49e-08,10;UBERON:0001950,1.49e-08,10|phase1_expression=1.44133962394315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.84450217571126,0,0,0,0,0,0,0,0,0,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0.65407546914134,0.659058548203415,2.3331587888914,0,0,0,0,0,1.02903774414379,0,0,5.66486090406874,3.70293685490423,4.43681982454325,0,0,0,0,0,1.79760066311043,0.384218305321555,5.91030790158323,7.1553147315796,6.73039876324422,16.2821061110168,12.3686382932904,8.69684674426174,11.0222291670972,16.5459381589804,13.2139057199266,24.0052195600153,15.0534402591119,4.87979264601717,8.69132614222892,6.77187381723788,10.6089539620525,9.56696437053856,13.5990440521361,20.3293723976831,19.362548588678,14.1663578827228,0.605809546665472,0.453429360640713,0,0.860423876981386,2.719885334831,7.01614149129162,3.89865850468601,4.92829575807069,0.842666520790511,0,0,0,2.11265129665021,0,0,0,0,0,0,1.25602267690966,0,24.9382793628906,6.07198643681475,12.7875500891099,12.2226213545711,13.7157602902887,17.52071736322,18.2216557428029,0,0.433798070759735,0,0.485300549842228,0.441683036920787,0.969750506270444,0,47.4304891158706,38.7476407604892,0.510914110417183,0,0,0,9.8861822007183,19.6725259212009,10.4293112253677,27.4642425903797,24.5486839037117,18.7009240103604,25.471878301638,3.97173519016234,0.124406970610093,0.505445516867349,2.31486041475121,0.910843100738926,0.919608417733892,1.80062129805349,1.80845781402858,7.68812440410005,4.22775276940004,5.528401749024,9.57202471734358,0,1.32374256117473,2.11141348996739,0.657587197282725,1.11218899690239,0,0.205782136407943,5.17489093728082,0,0,0,0.414251545071004,0,0,0,0,0,0.232533944750408,0,0,0,0,0.324275238183423,0,0.219550115291051,0.134206418760372,47.5255283754928,18.5228302282712,0,0,1.06644125267617,1.62565670302307,2.19074684247559,0.605050573870028,1.11189021922435,0.570676878337677,0.949058123089023,0.494096864172033,0.251335208800269,0.795825888164603,0.19496408711912,0,0.216138049874694,0,0.189667900953082,1.71372768914593,0,0.203651327845314,0.387904974335251,0.701358198903186,0.379419222745544,1.03327103585722,0.3139974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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=224997 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=Q9D415,D3Z709,Q3UHD8 | |||
|association_with_transcript=0bp_to_ENSMUST00000125691,ENSMUST00000150798,ENSMUST00000155823,uc008dky.1,uc008dkz.1,uc008dla.1,uc008dlb.2,uc008dlc.2,uc008dld.2_5end | |||
|cluster_id=chr17:70318701..70318718,+ | |||
|description=CAGE_peak_3_at_Dlgap1_5end | |||
|id=chr17:70318701..70318718,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.85e-15!33;CL:0000047!1.85e-15!33;CL:0000031!1.85e-15!33;CL:0000404!1.85e-15!33;CL:0000221!2.86e-12!44;CL:0000133!2.86e-12!44;CL:0002319!3.50e-12!43;CL:0000117!2.14e-11!23;CL:0000337!2.14e-11!23;CL:0000393!8.41e-11!39;CL:0000211!8.41e-11!39;CL:0000055!8.23e-09!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,4.08e-18,33;CL:0000047,4.08e-18,33;CL:0000031,4.08e-18,33;CL:0000404,4.08e-18,33;CL:0000393,9.42e-14,39;CL:0000211,9.42e-14,39;CL:0000117,2.83e-13,23;CL:0000337,2.83e-13,23;CL:0000221,3.66e-12,44;CL:0000133,3.66e-12,44;CL:0002319,4.80e-12,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!1.22e-27!71;UBERON:0003075!1.22e-27!71;UBERON:0007284!1.22e-27!71;UBERON:0004121!1.43e-26!102;UBERON:0000924!1.43e-26!102;UBERON:0006601!1.43e-26!102;UBERON:0001017!2.62e-26!73;UBERON:0005743!2.62e-26!73;UBERON:0000073!8.58e-26!75;UBERON:0001016!8.58e-26!75;UBERON:0001049!3.77e-20!52;UBERON:0005068!3.77e-20!52;UBERON:0006241!3.77e-20!52;UBERON:0007135!3.77e-20!52;UBERON:0000955!3.44e-19!50;UBERON:0006238!3.44e-19!50;UBERON:0000033!4.58e-19!63;UBERON:0002616!1.91e-18!49;UBERON:0002020!4.83e-18!34;UBERON:0003056!5.45e-16!49;UBERON:0002791!4.90e-15!29;UBERON:0003528!4.90e-15!29;UBERON:0001893!4.90e-15!29;UBERON:0003080!1.36e-14!40;UBERON:0002780!3.92e-14!39;UBERON:0001890!3.92e-14!39;UBERON:0006240!3.92e-14!39;UBERON:0000956!1.86e-11!21;UBERON:0001869!1.86e-11!21;UBERON:0000203!1.86e-11!21;UBERON:0002619!1.01e-09!17;UBERON:0000468!4.80e-08!333;UBERON:0002021!1.98e-07!10;UBERON:0000411!1.98e-07!10;UBERON:0001950!1.98e-07!10;UBERON:0007811!2.07e-07!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.04e-26,73;UBERON:0001016,5.56e-25,75;UBERON:0002346,1.50e-21,64;UBERON:0003075,1.50e-21,64;UBERON:0007284,1.50e-21,64;UBERON:0000073,1.42e-20,54;UBERON:0002020,1.69e-20,34;UBERON:0004121,2.13e-20,95;UBERON:0000924,2.13e-20,95;UBERON:0006601,2.13e-20,95;UBERON:0001049,4.98e-19,52;UBERON:0005068,4.98e-19,52;UBERON:0006241,4.98e-19,52;UBERON:0007135,4.98e-19,52;UBERON:0010371,2.03e-17,73;UBERON:0003528,6.18e-17,29;UBERON:0002791,6.18e-17,29;UBERON:0001893,6.18e-17,29;UBERON:0010314,3.84e-16,92;UBERON:0000955,6.57e-16,47;UBERON:0006238,6.57e-16,47;UBERON:0002616,4.09e-15,46;UBERON:0003056,1.93e-14,49;UBERON:0003080,8.36e-14,40;UBERON:0002780,2.78e-13,39;UBERON:0001890,2.78e-13,39;UBERON:0006240,2.78e-13,39;UBERON:0000956,1.13e-12,21;UBERON:0001869,1.13e-12,21;UBERON:0000203,1.13e-12,21;UBERON:0002619,1.32e-10,17;UBERON:0002021,1.49e-08,10;UBERON:0000411,1.49e-08,10;UBERON:0001950,1.49e-08,10 | |||
|phase1_expression=1.44133962394315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.84450217571126,0,0,0,0,0,0,0,0,0,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0.65407546914134,0.659058548203415,2.3331587888914,0,0,0,0,0,1.02903774414379,0,0,5.66486090406874,3.70293685490423,4.43681982454325,0,0,0,0,0,1.79760066311043,0.384218305321555,5.91030790158323,7.1553147315796,6.73039876324422,16.2821061110168,12.3686382932904,8.69684674426174,11.0222291670972,16.5459381589804,13.2139057199266,24.0052195600153,15.0534402591119,4.87979264601717,8.69132614222892,6.77187381723788,10.6089539620525,9.56696437053856,13.5990440521361,20.3293723976831,19.362548588678,14.1663578827228,0.605809546665472,0.453429360640713,0,0.860423876981386,2.719885334831,7.01614149129162,3.89865850468601,4.92829575807069,0.842666520790511,0,0,0,2.11265129665021,0,0,0,0,0,0,1.25602267690966,0,24.9382793628906,6.07198643681475,12.7875500891099,12.2226213545711,13.7157602902887,17.52071736322,18.2216557428029,0,0.433798070759735,0,0.485300549842228,0.441683036920787,0.969750506270444,0,47.4304891158706,38.7476407604892,0.510914110417183,0,0,0,9.8861822007183,19.6725259212009,10.4293112253677,27.4642425903797,24.5486839037117,18.7009240103604,25.471878301638,3.97173519016234,0.124406970610093,0.505445516867349,2.31486041475121,0.910843100738926,0.919608417733892,1.80062129805349,1.80845781402858,7.68812440410005,4.22775276940004,5.528401749024,9.57202471734358,0,1.32374256117473,2.11141348996739,0.657587197282725,1.11218899690239,0,0.205782136407943,5.17489093728082,0,0,0,0.414251545071004,0,0,0,0,0,0.232533944750408,0,0,0,0,0.324275238183423,0,0.219550115291051,0.134206418760372,47.5255283754928,18.5228302282712,0,0,1.06644125267617,1.62565670302307,2.19074684247559,0.605050573870028,1.11189021922435,0.570676878337677,0.949058123089023,0.494096864172033,0.251335208800269,0.795825888164603,0.19496408711912,0,0.216138049874694,0,0.189667900953082,1.71372768914593,0,0.203651327845314,0.387904974335251,0.701358198903186,0.379419222745544,1.03327103585722,0.31399745568275,0,2.96452627087149,0.166845105716094,0.196558995113203,0.224862112384854,0,0,0,0.575392274901621,0.324270453550071,0.549122826376163,0,1.11642284300551,2.18426371180192,0.505157755894224,1.4351793081753,1.4473305640901,0,0,0.488894929326078,0.509235257325564,0,0.335012514883631,0.238043640886014,0,0.315270288212382,0,0,0,0,0,0,0,0,0.275936746304732,11.0779907091576,13.1277088983268,0,0,12.9358369960665,14.4462335389756,8.40151251157916,4.54040716109849,4.23317480756549,7.35998980050964,21.8597778904443,14.9050487534769,18.1832377855401,95.1111096608549,9.22610553853746,1.95872164033981,5.53815661802159,3.95928295134085,1.32745138339963,0,0,0.188605079755898,0,0.614870295887855,1.03371317267288,1.09060118843252,0,0.316036757935816,0,1.03135543248187,1.70219802876894,0.720244376125241,0.129358683782755,0.643011105094777,0.532020700926821,0.356737635204141,1.15184314421485,0.913394847343798,0,0,0.661585194164886,0.16488625294148,0.645857706783622,0.301564624640779,0.119372344003136,0,0,10.3838169125885,0,0.619160603889667,0.185194527369712,0,0,0,0,0,0,0.954670618015114,0.316335993581135,0.609958401380546,1.18805874903981,0.836353184057875,1.09181281873089,0.674321731924103,1.23980183588004,0.523511883968059,0,0,2.25477175473676,12.4098733216502,6.783798108741,9.33365704051429,5.8121920564979,4.89972763923257,4.3422178298929,3.77592716047455,3.98465508817701,2.89900944991207,3.45636007509439,0,0,0.102710957164827,0,0.179026695667481,0,0.120195449519969,0,0,0,0,0.0974578807397524,0.0962118416403295,0,0,0.221985953374065,0.358855426437903,0.335769232728157,1.15913756419314,0.93841237725591,3.29672923681077,0.643105137237198,0.501572104035363,14.6835479080437,16.1113832777512,21.7700295106971,30.0743069101453,18.4972280338073,15.8632718451837,22.2757425076496,13.0593148935024,24.0165476761628,16.0505696643064,0.207574695168353,0.798049746802062,2.04880326904961,4.132814190161,0.838452650511929,2.75765262675021,3.11145418922261,2.88449080134452,2.56735367673452,2.52697211763797,2.78827229879264,2.45214243801899,4.12022632867483,4.48176066834085,4.7671439233159,3.81034953026459,4.05595140806994,6.17309505483856,3.29668720642645,2.79677948255355,3.77156177623957,1.95223386775271,4.29185141905178,4.21504608233753,4.6113596403512,4.82303264982556,4.75612729469209,4.73525480588117,3.39510284614654,5.61142271657738,4.86403574309114,5.41774653065599,2.04615521584845,5.11291575913688,2.89359916471712,4.99621155875892,3.27504251823572,4.08255002691767,1.91288332068843,0.220591419119515,1.62307484934295 | |||
|short_description=p3@Dlgap1 | |||
}} |
Latest revision as of 19:54, 26 September 2015
Short description: | p3@Dlgap1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Dlgap1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000125691, ENSMUST00000150798, ENSMUST00000155823, uc008dky.1, uc008dkz.1, uc008dla.1, uc008dlb.2, uc008dlc.2, uc008dld.2_5end |
EntrezGene: | Dlgap1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 4.08e-18 | 33 |
neuronal stem cell | 4.08e-18 | 33 |
neuroblast | 4.08e-18 | 33 |
electrically signaling cell | 4.08e-18 | 33 |
electrically responsive cell | 9.42e-14 | 39 |
electrically active cell | 9.42e-14 | 39 |
CNS neuron (sensu Vertebrata) | 2.83e-13 | 23 |
neuroblast (sensu Vertebrata) | 2.83e-13 | 23 |
ectodermal cell | 3.66e-12 | 44 |
neurectodermal cell | 3.66e-12 | 44 |
neural cell | 4.80e-12 | 43 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.04e-26 | 73 |
nervous system | 5.56e-25 | 75 |
neurectoderm | 1.50e-21 | 64 |
neural plate | 1.50e-21 | 64 |
presumptive neural plate | 1.50e-21 | 64 |
regional part of nervous system | 1.42e-20 | 54 |
gray matter | 1.69e-20 | 34 |
ectoderm-derived structure | 2.13e-20 | 95 |
ectoderm | 2.13e-20 | 95 |
presumptive ectoderm | 2.13e-20 | 95 |
neural tube | 4.98e-19 | 52 |
neural rod | 4.98e-19 | 52 |
future spinal cord | 4.98e-19 | 52 |
neural keel | 4.98e-19 | 52 |
ecto-epithelium | 2.03e-17 | 73 |
brain grey matter | 6.18e-17 | 29 |
regional part of telencephalon | 6.18e-17 | 29 |
telencephalon | 6.18e-17 | 29 |
structure with developmental contribution from neural crest | 3.84e-16 | 92 |
brain | 6.57e-16 | 47 |
future brain | 6.57e-16 | 47 |
regional part of brain | 4.09e-15 | 46 |
pre-chordal neural plate | 1.93e-14 | 49 |
anterior neural tube | 8.36e-14 | 40 |
regional part of forebrain | 2.78e-13 | 39 |
forebrain | 2.78e-13 | 39 |
future forebrain | 2.78e-13 | 39 |
cerebral cortex | 1.13e-12 | 21 |
cerebral hemisphere | 1.13e-12 | 21 |
pallium | 1.13e-12 | 21 |
regional part of cerebral cortex | 1.32e-10 | 17 |
occipital lobe | 1.49e-08 | 10 |
visual cortex | 1.49e-08 | 10 |
neocortex | 1.49e-08 | 10 |