FFCP PHASE1:Mm9::chr15:76077268..76077286,+: Difference between revisions
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{{FFCP|EntrezGene=66168|HGNC=|MCL_coexpression_id=208|UniProt=Q9ESF4|association_with_transcript=31bp_to_ENSMUST00000023225,NM_023168,uc007wjl.1_5end|description=CAGE_peak_3_at_Grina_5end|id=chr15:76077268..76077286,+|ontology_enrichment_celltype=CL:0000055!2.14e-10!50;CL:0002319!2.95e-09!43;CL:0000221!3.74e-09!44;CL:0000133!3.74e-09!44;CL:0000393!4.42e-08!39;CL:0000211!4.42e-08!39;CL:0000117!2.54e-07!23;CL:0000337!2.54e-07!23;CL:0000540!5.08e-07!33;CL:0000047!5.08e-07!33;CL:0000031!5.08e-07!33;CL:0000404!5.08e-07!33|ontology_enrichment_celltype_v019_2=CL:0002319,3.05e-09,43;CL:0000221,3.86e-09,44;CL:0000133,3.86e-09,44;CL:0000393,4.68e-08,39;CL:0000211,4.68e-08,39;CL:0000117,2.87e-07,23;CL:0000337,2.87e-07,23;CL:0000540,5.52e-07,33;CL:0000047,5.52e-07,33;CL:0000031,5.52e-07,33;CL:0000404,5.52e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!8.83e-23!73;UBERON:0005743!8.83e-23!73;UBERON:0000073!9.53e-22!75;UBERON:0001016!9.53e-22!75;UBERON:0004121!4.60e-19!102;UBERON:0000924!4.60e-19!102;UBERON:0006601!4.60e-19!102;UBERON:0001049!1.79e-17!52;UBERON:0005068!1.79e-17!52;UBERON:0006241!1.79e-17!52;UBERON:0007135!1.79e-17!52;UBERON:0000955!7.78e-17!50;UBERON:0006238!7.78e-17!50;UBERON:0002616!2.36e-16!49;UBERON:0000033!3.35e-16!63;UBERON:0002346!4.55e-16!71;UBERON:0003075!4.55e-16!71;UBERON:0007284!4.55e-16!71;UBERON:0002020!9.79e-13!34;UBERON:0003080!3.03e-11!40;UBERON:0003056!3.42e-11!49;UBERON:0002780!1.13e-10!39;UBERON:0001890!1.13e-10!39;UBERON:0006240!1.13e-10!39;UBERON:0002791!2.10e-10!29;UBERON:0003528!2.10e-10!29;UBERON:0001893!2.10e-10!29;UBERON:0004111!5.55e-10!122;UBERON:0000025!2.96e-09!114;UBERON:0007023!4.72e-08!51;UBERON:0003076!1.79e-07!12;UBERON:0003057!1.79e-07!12;UBERON:0002619!1.96e-07!17;UBERON:0002021!3.59e-07!10;UBERON:0000411!3.59e-07!10;UBERON:0001950!3.59e-07!10;UBERON:0000956!7.93e-07!21;UBERON:0001869!7.93e-07!21;UBERON:0000203!7.93e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.84e-23,73;UBERON:0001016,7.51e-22,75;UBERON:0004121,1.06e-19,95;UBERON:0000924,1.06e-19,95;UBERON:0006601,1.06e-19,95;UBERON:0000073,6.27e-19,54;UBERON:0001049,1.60e-17,52;UBERON:0005068,1.60e-17,52;UBERON:0006241,1.60e-17,52;UBERON:0007135,1.60e-17,52;UBERON:0002346,2.65e-17,64;UBERON:0003075,2.65e-17,64;UBERON:0007284,2.65e-17,64;UBERON:0000955,7.06e-15,47;UBERON:0006238,7.06e-15,47;UBERON:0002616,2.10e-14,46;UBERON:0010371,3.89e-14,73;UBERON:0010314,1.41e-13,92;UBERON:0002020,9.98e-13,34;UBERON:0003080,3.08e-11,40;UBERON:0003056,3.28e-11,49;UBERON:0002780,1.16e-10,39;UBERON:0001890,1.16e-10,39;UBERON:0006240,1.16e-10,39;UBERON:0003528,2.25e-10,29;UBERON:0002791,2.25e-10,29;UBERON:0001893,2.25e-10,29;UBERON:0004111,1.00e-09,122;UBERON:0000025,5.34e-09,114;UBERON:0007023,3.59e-08,51;UBERON:0003076,1.53e-07,12;UBERON:0003057,1.53e-07,12;UBERON:0002619,1.67e-07,17;UBERON:0002021,3.08e-07,10;UBERON:0000411,3.08e-07,10;UBERON:0001950,3.08e-07,10;UBERON:0000956,9.09e-07,21;UBERON:0001869,9.09e-07,21;UBERON:0000203,9.09e-07,21|phase1_expression=1.60148847104794,1.74487703819681,1.36499771816861,3.32710632437513,0.500895729946347,1.00727563147134,1.40167584357315,0,0.140788722151667,0.234064526321993,0,0,0,0,2.99798785634096,1.01237633694913,4.19737126876888,0.630924330716475,0.411343300817216,0.42438965179803,36.3134848945068,0.992909512008853,1.82839852397255,1.59992422793407,1.83527424853736,0.57423196411502,1.7230479846363,1.50829862880122,5.13063232532209,2.77233142735924,1.55211357458713,0.635030673459631,4.92051830067656,0,0.577703239502549,0.498703936075477,0,2.51118978442145,0.7813353445238,2.09409497589519,8.2352408324342,3.41522742479223,1.45653105909346,7.1761186246079,7.09638518536602,5.13930906052708,13.3006528539167,5.45062890951116,18.2339531669612,22.3594383935426,6.43937539476668,5.75010257459886,1.00669563634642,0,0.336093799142464,2.82985379639542,2.86533439938757,2.57836046138721,7.68802551266472,16.398720357433,6.33831403506179,5.08266798103698,4.4464739805557,4.49949858640699,6.92206453796882,3.5524005747305,9.88680364710736,16.9056054341484,2.07379224616955,2.8351247049655,0.841299845405528,16.5677570954206,14.3564551618549,1.83736198822431,1.24599112323707,2.75765635983006,81.4857519395476,56.3101160955678,54.0694997061977,9.23204014111357,11.7104183811084,8.33461392890816,55.5574168012748,55.1507357831046,40.1859391653011,14.142172102736,14.0947963991112,9.50637173709033,1.59025005999687,1.28471652181535,2.89864488701678,2.58127163094416,11.5595126730318,8.09554787456726,11.695975514058,3.58421509677868,11.7973312910672,1.87473354835864,1.55871602761721,1.7666978725517,2.25349471642689,0,0,0,2.81438353314578,1.01343946190039,2.52762222507392,7.53613606145796,1.03575153458869,3.26572705942614,1.90833859442749,3.04465478312141,2.07553947530453,0.60289056221049,2.4693628498498,1.88499886994513,3.95511948374998,4.19338135067744,4.42305275974937,2.42650274921114,1.32504911076236,1.93950101254089,7.45567044872489,48.308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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=66168 | |||
|HGNC= | |||
|MCL_coexpression_id=208 | |||
|TSSclassifier=NA | |||
|UniProt=Q9ESF4 | |||
|association_with_transcript=31bp_to_ENSMUST00000023225,NM_023168,uc007wjl.1_5end | |||
|cluster_id=chr15:76077268..76077286,+ | |||
|description=CAGE_peak_3_at_Grina_5end | |||
|id=chr15:76077268..76077286,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.14e-10!50;CL:0002319!2.95e-09!43;CL:0000221!3.74e-09!44;CL:0000133!3.74e-09!44;CL:0000393!4.42e-08!39;CL:0000211!4.42e-08!39;CL:0000117!2.54e-07!23;CL:0000337!2.54e-07!23;CL:0000540!5.08e-07!33;CL:0000047!5.08e-07!33;CL:0000031!5.08e-07!33;CL:0000404!5.08e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,3.05e-09,43;CL:0000221,3.86e-09,44;CL:0000133,3.86e-09,44;CL:0000393,4.68e-08,39;CL:0000211,4.68e-08,39;CL:0000117,2.87e-07,23;CL:0000337,2.87e-07,23;CL:0000540,5.52e-07,33;CL:0000047,5.52e-07,33;CL:0000031,5.52e-07,33;CL:0000404,5.52e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!8.83e-23!73;UBERON:0005743!8.83e-23!73;UBERON:0000073!9.53e-22!75;UBERON:0001016!9.53e-22!75;UBERON:0004121!4.60e-19!102;UBERON:0000924!4.60e-19!102;UBERON:0006601!4.60e-19!102;UBERON:0001049!1.79e-17!52;UBERON:0005068!1.79e-17!52;UBERON:0006241!1.79e-17!52;UBERON:0007135!1.79e-17!52;UBERON:0000955!7.78e-17!50;UBERON:0006238!7.78e-17!50;UBERON:0002616!2.36e-16!49;UBERON:0000033!3.35e-16!63;UBERON:0002346!4.55e-16!71;UBERON:0003075!4.55e-16!71;UBERON:0007284!4.55e-16!71;UBERON:0002020!9.79e-13!34;UBERON:0003080!3.03e-11!40;UBERON:0003056!3.42e-11!49;UBERON:0002780!1.13e-10!39;UBERON:0001890!1.13e-10!39;UBERON:0006240!1.13e-10!39;UBERON:0002791!2.10e-10!29;UBERON:0003528!2.10e-10!29;UBERON:0001893!2.10e-10!29;UBERON:0004111!5.55e-10!122;UBERON:0000025!2.96e-09!114;UBERON:0007023!4.72e-08!51;UBERON:0003076!1.79e-07!12;UBERON:0003057!1.79e-07!12;UBERON:0002619!1.96e-07!17;UBERON:0002021!3.59e-07!10;UBERON:0000411!3.59e-07!10;UBERON:0001950!3.59e-07!10;UBERON:0000956!7.93e-07!21;UBERON:0001869!7.93e-07!21;UBERON:0000203!7.93e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.84e-23,73;UBERON:0001016,7.51e-22,75;UBERON:0004121,1.06e-19,95;UBERON:0000924,1.06e-19,95;UBERON:0006601,1.06e-19,95;UBERON:0000073,6.27e-19,54;UBERON:0001049,1.60e-17,52;UBERON:0005068,1.60e-17,52;UBERON:0006241,1.60e-17,52;UBERON:0007135,1.60e-17,52;UBERON:0002346,2.65e-17,64;UBERON:0003075,2.65e-17,64;UBERON:0007284,2.65e-17,64;UBERON:0000955,7.06e-15,47;UBERON:0006238,7.06e-15,47;UBERON:0002616,2.10e-14,46;UBERON:0010371,3.89e-14,73;UBERON:0010314,1.41e-13,92;UBERON:0002020,9.98e-13,34;UBERON:0003080,3.08e-11,40;UBERON:0003056,3.28e-11,49;UBERON:0002780,1.16e-10,39;UBERON:0001890,1.16e-10,39;UBERON:0006240,1.16e-10,39;UBERON:0003528,2.25e-10,29;UBERON:0002791,2.25e-10,29;UBERON:0001893,2.25e-10,29;UBERON:0004111,1.00e-09,122;UBERON:0000025,5.34e-09,114;UBERON:0007023,3.59e-08,51;UBERON:0003076,1.53e-07,12;UBERON:0003057,1.53e-07,12;UBERON:0002619,1.67e-07,17;UBERON:0002021,3.08e-07,10;UBERON:0000411,3.08e-07,10;UBERON:0001950,3.08e-07,10;UBERON:0000956,9.09e-07,21;UBERON:0001869,9.09e-07,21;UBERON:0000203,9.09e-07,21 | |||
|phase1_expression=1.60148847104794,1.74487703819681,1.36499771816861,3.32710632437513,0.500895729946347,1.00727563147134,1.40167584357315,0,0.140788722151667,0.234064526321993,0,0,0,0,2.99798785634096,1.01237633694913,4.19737126876888,0.630924330716475,0.411343300817216,0.42438965179803,36.3134848945068,0.992909512008853,1.82839852397255,1.59992422793407,1.83527424853736,0.57423196411502,1.7230479846363,1.50829862880122,5.13063232532209,2.77233142735924,1.55211357458713,0.635030673459631,4.92051830067656,0,0.577703239502549,0.498703936075477,0,2.51118978442145,0.7813353445238,2.09409497589519,8.2352408324342,3.41522742479223,1.45653105909346,7.1761186246079,7.09638518536602,5.13930906052708,13.3006528539167,5.45062890951116,18.2339531669612,22.3594383935426,6.43937539476668,5.75010257459886,1.00669563634642,0,0.336093799142464,2.82985379639542,2.86533439938757,2.57836046138721,7.68802551266472,16.398720357433,6.33831403506179,5.08266798103698,4.4464739805557,4.49949858640699,6.92206453796882,3.5524005747305,9.88680364710736,16.9056054341484,2.07379224616955,2.8351247049655,0.841299845405528,16.5677570954206,14.3564551618549,1.83736198822431,1.24599112323707,2.75765635983006,81.4857519395476,56.3101160955678,54.0694997061977,9.23204014111357,11.7104183811084,8.33461392890816,55.5574168012748,55.1507357831046,40.1859391653011,14.142172102736,14.0947963991112,9.50637173709033,1.59025005999687,1.28471652181535,2.89864488701678,2.58127163094416,11.5595126730318,8.09554787456726,11.695975514058,3.58421509677868,11.7973312910672,1.87473354835864,1.55871602761721,1.7666978725517,2.25349471642689,0,0,0,2.81438353314578,1.01343946190039,2.52762222507392,7.53613606145796,1.03575153458869,3.26572705942614,1.90833859442749,3.04465478312141,2.07553947530453,0.60289056221049,2.4693628498498,1.88499886994513,3.95511948374998,4.19338135067744,4.42305275974937,2.42650274921114,1.32504911076236,1.93950101254089,7.45567044872489,48.3088315069053,43.9838084308256,1.78819938646014,0.239630249011841,0,0.127070227073065,47.6334233307336,21.0450277296568,3.39266750704734,31.8098505951866,30.4301394223093,44.6744295803054,31.474805035145,1.32391173005411,2.86136032403214,4.29628689337247,8.83855794723191,1.17108398666433,0.459804208866946,1.98068342785884,2.41127708537144,3.40182495756639,5.12454881139399,4.96619140166563,15.78090561508,0.862271971731369,1.13463648100692,1.23165786914764,0.657587197282725,1.39023624612799,1.0447564995665,1.23469281844766,0.995171334092466,0,0,0,1.03562886267751,1.64168241986767,0.900310307305074,1.89395788468168,2.36117078096885,1.23413690309903,1.16266972375204,1.87791380979733,1.98501082024188,2.30383789878873,1.97000956894914,3.24275238183423,3.07019973593198,3.07370161407471,2.95254121272818,23.9730541363105,5.9684675179985,8.59088835757875,1.85115396664481,0.426576501070468,0.696710015581316,1.03093969057675,0.80673409849337,2.00140239460383,2.28270751335071,2.37264530772256,3.62337700392824,2.26201687920243,3.78017296878187,2.9244613067868,0.898819408654221,2.59365659849633,3.38540164532424,0.569003702859245,0.571242563048644,2.25415471346161,2.03651327845314,3.29719228184964,2.80543279561274,4.61626721007078,7.0852871030209,5.49495547444812,5.92306386824642,5.63259991465583,0.500535317148282,0.982794975566015,0.899448449539415,1.01430060694251,1.20588579876208,2.03700681425136,2.30156909960649,2.10775794807546,1.37280706594041,1.43768206527355,1.48856379067401,2.18426371180192,2.52578877947112,4.84373016509163,2.41221760681684,1.84753190166605,0.568474235311454,0.325929952884052,0.509235257325564,0.234690248288502,1.34005005953453,1.6663054862021,0.195133647857799,1.10344600874334,1.32878813789265,0.956728611944923,1.3109065177259,1.03610989119537,2.31438493730419,0,1.63171705145613,3.44234991113325,2.20749397043786,53.1422452859591,46.8846746368813,2.95082901678016,7.82659874333556,1.26203287766503,3.12350995437311,5.60100834105277,2.62865677747807,2.45078541490634,1.41538265394416,4.04810701674894,4.38383786866968,3.95287777946523,11.8888887076069,2.12910127812403,1.78065603667255,1.46598263418218,2.63952196756057,11.9470624505967,1.94224508923985,0.906970670894253,2.26326095707078,2.65771703592696,1.53717573971964,3.35956781118687,4.36240475373007,0.712994756769443,2.21225730555071,5.27093042874994,8.25084345985495,7.14923172082955,1.8006109403131,2.32845630808958,1.07168517515796,2.12808280370728,1.96205699362278,3.9491764944509,5.17590413494819,2.3467170806371,2.33015277950202,3.96951116498931,2.80306630000516,0.807322133479528,0.904693873922338,1.19372344003136,0.492422699235184,2.33184669303881,48.5814291267535,1.87957968877638,0.412773735926445,1.66675074632741,1.50694765603753,1.0935538217682,1.60144721244566,0.849892149969277,0.69975726161829,0.276399947608848,1.90934123603023,0.949007980743406,1.62655573701479,0.648032044930808,0.418176592028937,0.87345025498471,1.07891477107857,1.32245529160537,1.04702376793612,2.85152941241944,3.10669656543463,236.75103424736,1.04661582230785,0.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| |||
|short_description=p3@Grina | |||
}} |
Latest revision as of 00:24, 27 September 2015
Short description: | p3@Grina |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Grina_5end |
Coexpression cluster: | MCL_coexpression_mm9:208 |
Association with transcript: | 31bp_to_ENSMUST00000023225, NM_023168, uc007wjl.1_5end |
EntrezGene: | Grina |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 3.05e-09 | 43 |
ectodermal cell | 3.86e-09 | 44 |
neurectodermal cell | 3.86e-09 | 44 |
electrically responsive cell | 4.68e-08 | 39 |
electrically active cell | 4.68e-08 | 39 |
CNS neuron (sensu Vertebrata) | 2.87e-07 | 23 |
neuroblast (sensu Vertebrata) | 2.87e-07 | 23 |
neuron | 5.52e-07 | 33 |
neuronal stem cell | 5.52e-07 | 33 |
neuroblast | 5.52e-07 | 33 |
electrically signaling cell | 5.52e-07 | 33 |