FFCP PHASE1:Mm9::chr18:37915372..37915421,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=93703,93706,93707,93708,93711,93716,93717,93723,93724 | |EntrezGene=93703,93706,93707,93708,93711,93716,93717,93723,93724 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1715 | |||
|TSSclassifier=NA | |||
|UniProt=Q91XY8 | |UniProt=Q91XY8 | ||
|association_with_transcript=-5bp_to_ENSMUST00000061279,NM_033594,uc008erb.1_5end | |association_with_transcript=-5bp_to_ENSMUST00000061279,NM_033594,uc008erb.1_5end | ||
|cluster_id=chr18:37915372..37915421,+ | |||
|description=CAGE_peak_4_at_Pcdhga11_5end,CAGE_peak_4_at_Pcdhga12_5end,CAGE_peak_4_at_Pcdhga3_5end,CAGE_peak_4_at_Pcdhga8_5end,CAGE_peak_4_at_Pcdhga9_5end,CAGE_peak_4_at_Pcdhgb6_5end,CAGE_peak_4_at_Pcdhgc3_5end,CAGE_peak_4_at_Pcdhgc4_5end,CAGE_peak_4_at_Pcdhgc5_5end | |description=CAGE_peak_4_at_Pcdhga11_5end,CAGE_peak_4_at_Pcdhga12_5end,CAGE_peak_4_at_Pcdhga3_5end,CAGE_peak_4_at_Pcdhga8_5end,CAGE_peak_4_at_Pcdhga9_5end,CAGE_peak_4_at_Pcdhgb6_5end,CAGE_peak_4_at_Pcdhgc3_5end,CAGE_peak_4_at_Pcdhgc4_5end,CAGE_peak_4_at_Pcdhgc5_5end | ||
|id=chr18:37915372..37915421,+ | |id=chr18:37915372..37915421,+ | ||
|ontology_enrichment_celltype=CL:0000117!1.36e-10!23;CL:0000337!1.36e-10!23;CL:0000221!1.15e-08!44;CL:0000133!1.15e-08!44;CL:0002319!2.62e-08!43;CL:0000055!9.67e-07!50 | |ontology_enrichment_celltype=CL:0000117!1.36e-10!23;CL:0000337!1.36e-10!23;CL:0000221!1.15e-08!44;CL:0000133!1.15e-08!44;CL:0002319!2.62e-08!43;CL:0000055!9.67e-07!50 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.58e-11,23;CL:0000337,5.58e-11,23;CL:0000221,4.79e-08,44;CL:0000133,4.79e-08,44;CL:0002319,1.09e-07,43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!8.43e-29!63;UBERON:0002346!1.22e-28!71;UBERON:0003075!1.22e-28!71;UBERON:0007284!1.22e-28!71;UBERON:0001049!5.41e-28!52;UBERON:0005068!5.41e-28!52;UBERON:0006241!5.41e-28!52;UBERON:0007135!5.41e-28!52;UBERON:0004121!6.54e-28!102;UBERON:0000924!6.54e-28!102;UBERON:0006601!6.54e-28!102;UBERON:0000955!1.68e-26!50;UBERON:0006238!1.68e-26!50;UBERON:0000073!3.90e-26!75;UBERON:0001016!3.90e-26!75;UBERON:0002616!9.96e-26!49;UBERON:0001017!4.91e-25!73;UBERON:0005743!4.91e-25!73;UBERON:0003056!1.38e-24!49;UBERON:0003080!2.12e-21!40;UBERON:0002780!7.96e-21!39;UBERON:0001890!7.96e-21!39;UBERON:0006240!7.96e-21!39;UBERON:0002020!1.93e-19!34;UBERON:0002791!8.29e-17!29;UBERON:0003528!8.29e-17!29;UBERON:0001893!8.29e-17!29;UBERON:0000153!1.76e-15!94;UBERON:0007811!3.66e-14!86;UBERON:0000025!1.29e-13!114;UBERON:0000956!1.79e-13!21;UBERON:0001869!1.79e-13!21;UBERON:0000203!1.79e-13!21;UBERON:0004111!2.77e-13!122;UBERON:0002619!2.06e-11!17;UBERON:0000468!1.00e-09!333;UBERON:0002021!6.65e-08!10;UBERON:0000411!6.65e-08!10;UBERON:0001950!6.65e-08!10;UBERON:0000922!2.04e-07!328;UBERON:0003076!4.70e-07!12;UBERON:0003057!4.70e-07!12 | |ontology_enrichment_uberon=UBERON:0000033!8.43e-29!63;UBERON:0002346!1.22e-28!71;UBERON:0003075!1.22e-28!71;UBERON:0007284!1.22e-28!71;UBERON:0001049!5.41e-28!52;UBERON:0005068!5.41e-28!52;UBERON:0006241!5.41e-28!52;UBERON:0007135!5.41e-28!52;UBERON:0004121!6.54e-28!102;UBERON:0000924!6.54e-28!102;UBERON:0006601!6.54e-28!102;UBERON:0000955!1.68e-26!50;UBERON:0006238!1.68e-26!50;UBERON:0000073!3.90e-26!75;UBERON:0001016!3.90e-26!75;UBERON:0002616!9.96e-26!49;UBERON:0001017!4.91e-25!73;UBERON:0005743!4.91e-25!73;UBERON:0003056!1.38e-24!49;UBERON:0003080!2.12e-21!40;UBERON:0002780!7.96e-21!39;UBERON:0001890!7.96e-21!39;UBERON:0006240!7.96e-21!39;UBERON:0002020!1.93e-19!34;UBERON:0002791!8.29e-17!29;UBERON:0003528!8.29e-17!29;UBERON:0001893!8.29e-17!29;UBERON:0000153!1.76e-15!94;UBERON:0007811!3.66e-14!86;UBERON:0000025!1.29e-13!114;UBERON:0000956!1.79e-13!21;UBERON:0001869!1.79e-13!21;UBERON:0000203!1.79e-13!21;UBERON:0004111!2.77e-13!122;UBERON:0002619!2.06e-11!17;UBERON:0000468!1.00e-09!333;UBERON:0002021!6.65e-08!10;UBERON:0000411!6.65e-08!10;UBERON:0001950!6.65e-08!10;UBERON:0000922!2.04e-07!328;UBERON:0003076!4.70e-07!12;UBERON:0003057!4.70e-07!12 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,7.93e-30,64;UBERON:0003075,7.93e-30,64;UBERON:0007284,7.93e-30,64;UBERON:0000073,8.34e-30,54;UBERON:0010314,2.56e-29,92;UBERON:0001049,3.96e-29,52;UBERON:0005068,3.96e-29,52;UBERON:0006241,3.96e-29,52;UBERON:0007135,3.96e-29,52;UBERON:0004121,4.31e-27,95;UBERON:0000924,4.31e-27,95;UBERON:0006601,4.31e-27,95;UBERON:0010371,8.37e-27,73;UBERON:0000955,2.84e-26,47;UBERON:0006238,2.84e-26,47;UBERON:0001016,8.48e-26,75;UBERON:0003056,1.42e-25,49;UBERON:0002616,1.79e-25,46;UBERON:0001017,1.14e-24,73;UBERON:0003080,3.00e-22,40;UBERON:0002780,1.19e-21,39;UBERON:0001890,1.19e-21,39;UBERON:0006240,1.19e-21,39;UBERON:0002020,3.30e-20,34;UBERON:0003528,1.85e-17,29;UBERON:0002791,1.85e-17,29;UBERON:0001893,1.85e-17,29;UBERON:0000956,5.54e-14,21;UBERON:0001869,5.54e-14,21;UBERON:0000203,5.54e-14,21;UBERON:0000025,1.51e-13,114;UBERON:0004111,6.85e-13,122;UBERON:0002619,7.83e-12,17;UBERON:0002021,3.55e-08,10;UBERON:0000411,3.55e-08,10;UBERON:0001950,3.55e-08,10;UBERON:0000922,5.35e-08,320;UBERON:0003076,2.72e-07,12;UBERON:0003057,2.72e-07,12 | |||
|phase1_expression=0.80074423552397,0,0,0,0,0,0,0,0,0,0,0,0.171200729931206,0,0,0,0,0,0,0,0.425216450755349,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288851619751275,0,0,0,0,0,0,0,0,0,0,0,2.34717403304412,6.97680500417429,7.46933021297204,4.27745777963423,1.95980990275508,4.31257693094915,0,0,0,3.8588915405392,2.57880095944881,3.6097046459421,5.46254444320914,6.87688273053643,3.1691570175309,4.06613438482959,1.77858959222228,0,0,0,1.79760066311043,3.07374644257244,5.39185984004084,7.02030879324791,9.67494822216357,10.5690864229407,7.06779331045163,5.75706756310284,7.18841032636773,11.0306254393203,3.30347642998166,7.02280359468532,7.37311359629969,5.01167893374737,6.03818447775904,9.37644067002168,6.97957497503452,2.25105044012672,5.65353516774197,7.36571463684169,6.83384067835694,7.08317894136142,4.99792875999015,9.67315969366855,0.579728977403356,0.860423876981386,0,0.539703191637817,0,0,0.280888840263504,0.170430322578058,0.259786004602869,0.70667914902068,5.49289337129054,0,0,7.11066703153331,1.29894624606728,2.28023878927589,0,0.11418387971906,1.03575153458869,1.63286352971307,3.64319186208885,2.74018930480927,2.30615497256059,1.80867168663147,3.41007250693544,1.13099932196708,0.988779870937496,2.16899035379867,0,2.10296904931632,1.32504911076236,1.93950101254089,0,18.737971008739,18.431310199584,0,0.11981512450592,0,0,7.63932260964596,13.7250180845588,19.476424577494,18.0777292999968,12.7857728665165,7.89594569326328,9.73447578406546,3.1570202793598,1.99051152976149,0.758168275301024,2.94618598241064,5.07469727554544,4.13823787980251,4.14142898552303,5.72678307775717,6.39543092022482,6.02134485338794,5.528401749024,3.88055056108524,4.95806383745537,3.21480336285293,3.51902248327898,2.19195732427575,7.50727572909114,2.78601733217733,2.88094990971121,1.99034266818493,0,0,0,2.89976081549703,2.11073453982987,3.6012412292203,2.60419209143731,4.13204886669548,2.62254091908543,4.18561100550734,2.14618721119695,3.50296027101508,3.62031669809657,1.47750717671186,1.4592385718254,2.19299981137998,1.53685080703735,1.07365135008297,15.7717461423095,21.6099685996497,0.330418782983798,0.528901133327089,2.13288250535234,2.32236671860439,2.70621668776396,2.21851877085677,1.11189021922435,1.14135375667535,0,2.30578536613615,1.75934646160189,0.198956472041151,0.779856348476481,0.898819408654221,0.648414149624083,0.398282546508734,1.89667900953082,3.65595240351132,1.1270773567308,2.03651327845314,1.74557238450863,1.82353131714828,1.58091342810643,1.18088118383682,1.56998727841375,0.863780147452604,0,0.500535317148282,0.982794975566015,0,0.405720242777006,0.482354319504834,0,0.287696137450811,0,0,1.43768206527355,1.11642284300551,0.624075346229121,0,0,0.482443521363367,3.51031061316549,2.08440552947533,3.09633455239849,2.20668611507745,1.64283173801951,2.84760637651087,1.42826184531608,1.95133647857799,5.35959489961049,4.65075848262427,2.71073106717728,3.11340297959902,4.14443956478149,3.03763023021174,0,0,0.491764273019036,1.10374698521893,9.15138362930414,9.14251155419185,0,1.26235463602186,0.94652465824877,1.17131623288992,0.646270193198397,0.477937595905104,0.668396022247182,0,1.61924280669958,1.46127928955656,1.97643888973262,18.9579576688866,1.84522110770749,1.78065603667255,2.28041743095006,1.97964147567043,0,1.69946445308487,0.604647113929502,0.943025398779491,1.18120757152309,0.922305443831782,1.55056975900933,0.727067458955011,1.06949213515416,0,0,0,4.42571487479924,3.6012218806262,5.30370603509293,5.14408884075822,3.54680467284547,6.0645397984704,5.59466670047211,7.91608867697958,1.40803024838226,3.38931313382112,0.441056796109924,1.31909002353184,2.9063596805263,2.83470747162333,1.55184047204077,1.80554989719567,0.582961673259701,8.52956389248344,0,1.44470807574256,0.740778109478847,0,0.27338845544205,0.228778173206523,0.169978429993855,0,0,0.954670618015114,2.37251995185852,2.64315307264903,2.70013352054503,2.09088296014469,2.18362563746178,2.15782954215713,2.14898984885873,2.87931536182433,1.16653475962614,1.24267862617385,0,2.0932316446157,1.32366792365678,2.33341426012857,1.93739735216597,1.68956125490778,3.16864544343536,1.17183946359555,1.04859344425711,0,0,0,1.21635129174099,1.74608627180206,0.51968329191118,0.358053391334963,0.993406773906324,0.360586348559907,0.295379054349154,0.100966449948148,0.0762068066549998,0.201652370273681,0.194915761479505,0.0962118416403295,0.350630706544707,1.81384306892169,0,0.0897138566094757,0,2.12508553435409,1.68914227906064,1.64836461840539,1.50057865355346,2.50786052017682,14.1187960654267,21.1749608793301,22.9158205375759,18.5601436931183,16.4419804744954,11.3309084608455,11.4753825039407,17.1122057225204,16.7662691324156,16.0505696643064,1.55681021376265,4.78829848081237,3.75613932659095,3.16038732188782,1.46729213839588,2.20612210140017,2.889207461421,3.09052585858341,2.24643446714271,4.29585259998456,3.04175159868288,2.45214243801899,4.02658482120494,3.64943368707755,3.27382173046996,4.28664322154766,4.05595140806994,3.27945674788299,1.64834360321323,3.82717192349433,2.7429540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| ||
|short_description=p4@Pcdhga11,p4@Pcdhga12,p4@Pcdhga3,p4@Pcdhga8,p4@Pcdhga9,p4@Pcdhgb6,p4@Pcdhgc3,p4@Pcdhgc4,p4@Pcdhgc5 | |short_description=p4@Pcdhga11,p4@Pcdhga12,p4@Pcdhga3,p4@Pcdhga8,p4@Pcdhga9,p4@Pcdhgb6,p4@Pcdhgc3,p4@Pcdhgc4,p4@Pcdhgc5 | ||
}} | }} |
Latest revision as of 05:55, 27 September 2015
Short description: | p4@Pcdhga11, p4@Pcdhga12, p4@Pcdhga3, p4@Pcdhga8, p4@Pcdhga9, p4@Pcdhgb6, p4@Pcdhgc3, p4@Pcdhgc4, p4@Pcdhgc5 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Pcdhga11_5end, CAGE_peak_4_at_Pcdhga12_5end, CAGE_peak_4_at_Pcdhga3_5end, CAGE_peak_4_at_Pcdhga8_5end, CAGE_peak_4_at_Pcdhga9_5end, CAGE_peak_4_at_Pcdhgb6_5end, CAGE_peak_4_at_Pcdhgc3_5end, CAGE_peak_4_at_Pcdhgc4_5end, CAGE_peak_4_at_Pcdhgc5_5end |
Coexpression cluster: | MCL_coexpression_mm9:1715 |
Association with transcript: | -5bp_to_ENSMUST00000061279, NM_033594, uc008erb.1_5end |
EntrezGene: | 93703,93706,93707,93708,93711,93716,93717,93723,93724 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.58e-11 | 23 |
neuroblast (sensu Vertebrata) | 5.58e-11 | 23 |
ectodermal cell | 4.79e-08 | 44 |
neurectodermal cell | 4.79e-08 | 44 |
neural cell | 1.09e-07 | 43 |