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FFCP PHASE1:Mm9::chr18:37915372..37915421,+: Difference between revisions

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(Created page with "{{FFCP |id=chr18:37915372..37915421,+ |short_description=p4@Pcdhga11,p4@Pcdhga12,p4@Pcdhga3,p4@Pcdhga8,p4@Pcdhga9,p4@Pcdhgb6,p4@Pcdhgc3,p4@Pcdhgc4,p4@Pcdhgc5 |description=C...")
 
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{{FFCP
{{FFCP
|id=chr18:37915372..37915421,+
|DHSsupport=NA
|short_description=p4@Pcdhga11,p4@Pcdhga12,p4@Pcdhga3,p4@Pcdhga8,p4@Pcdhga9,p4@Pcdhgb6,p4@Pcdhgc3,p4@Pcdhgc4,p4@Pcdhgc5
|DPIdataset=NA
|description=CAGE_peak_4_at_Pcdhga11_5end,CAGE_peak_4_at_Pcdhga12_5end,CAGE_peak_4_at_Pcdhga3_5end,CAGE_peak_4_at_Pcdhga8_5end,CAGE_peak_4_at_Pcdhga9_5end,CAGE_peak_4_at_Pcdhgb6_5end,CAGE_peak_4_at_Pcdhgc3_5end,CAGE_peak_4_at_Pcdhgc4_5end,CAGE_peak_4_at_Pcdhgc5_5end
|association_with_transcript=-5bp_to_ENSMUST00000061279,NM_033594,uc008erb.1_5end
|EntrezGene=93703,93706,93707,93708,93711,93716,93717,93723,93724
|EntrezGene=93703,93706,93707,93708,93711,93716,93717,93723,93724
|HGNC=
|HGNC=
|MCL_coexpression_id=1715
|TSSclassifier=NA
|UniProt=Q91XY8
|UniProt=Q91XY8
|association_with_transcript=-5bp_to_ENSMUST00000061279,NM_033594,uc008erb.1_5end
|cluster_id=chr18:37915372..37915421,+
|description=CAGE_peak_4_at_Pcdhga11_5end,CAGE_peak_4_at_Pcdhga12_5end,CAGE_peak_4_at_Pcdhga3_5end,CAGE_peak_4_at_Pcdhga8_5end,CAGE_peak_4_at_Pcdhga9_5end,CAGE_peak_4_at_Pcdhgb6_5end,CAGE_peak_4_at_Pcdhgc3_5end,CAGE_peak_4_at_Pcdhgc4_5end,CAGE_peak_4_at_Pcdhgc5_5end
|id=chr18:37915372..37915421,+
|ontology_enrichment_celltype=CL:0000117!1.36e-10!23;CL:0000337!1.36e-10!23;CL:0000221!1.15e-08!44;CL:0000133!1.15e-08!44;CL:0002319!2.62e-08!43;CL:0000055!9.67e-07!50
|ontology_enrichment_celltype_v019_2=CL:0000117,5.58e-11,23;CL:0000337,5.58e-11,23;CL:0000221,4.79e-08,44;CL:0000133,4.79e-08,44;CL:0002319,1.09e-07,43
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0000033!8.43e-29!63;UBERON:0002346!1.22e-28!71;UBERON:0003075!1.22e-28!71;UBERON:0007284!1.22e-28!71;UBERON:0001049!5.41e-28!52;UBERON:0005068!5.41e-28!52;UBERON:0006241!5.41e-28!52;UBERON:0007135!5.41e-28!52;UBERON:0004121!6.54e-28!102;UBERON:0000924!6.54e-28!102;UBERON:0006601!6.54e-28!102;UBERON:0000955!1.68e-26!50;UBERON:0006238!1.68e-26!50;UBERON:0000073!3.90e-26!75;UBERON:0001016!3.90e-26!75;UBERON:0002616!9.96e-26!49;UBERON:0001017!4.91e-25!73;UBERON:0005743!4.91e-25!73;UBERON:0003056!1.38e-24!49;UBERON:0003080!2.12e-21!40;UBERON:0002780!7.96e-21!39;UBERON:0001890!7.96e-21!39;UBERON:0006240!7.96e-21!39;UBERON:0002020!1.93e-19!34;UBERON:0002791!8.29e-17!29;UBERON:0003528!8.29e-17!29;UBERON:0001893!8.29e-17!29;UBERON:0000153!1.76e-15!94;UBERON:0007811!3.66e-14!86;UBERON:0000025!1.29e-13!114;UBERON:0000956!1.79e-13!21;UBERON:0001869!1.79e-13!21;UBERON:0000203!1.79e-13!21;UBERON:0004111!2.77e-13!122;UBERON:0002619!2.06e-11!17;UBERON:0000468!1.00e-09!333;UBERON:0002021!6.65e-08!10;UBERON:0000411!6.65e-08!10;UBERON:0001950!6.65e-08!10;UBERON:0000922!2.04e-07!328;UBERON:0003076!4.70e-07!12;UBERON:0003057!4.70e-07!12
|ontology_enrichment_uberon_v019_2=UBERON:0002346,7.93e-30,64;UBERON:0003075,7.93e-30,64;UBERON:0007284,7.93e-30,64;UBERON:0000073,8.34e-30,54;UBERON:0010314,2.56e-29,92;UBERON:0001049,3.96e-29,52;UBERON:0005068,3.96e-29,52;UBERON:0006241,3.96e-29,52;UBERON:0007135,3.96e-29,52;UBERON:0004121,4.31e-27,95;UBERON:0000924,4.31e-27,95;UBERON:0006601,4.31e-27,95;UBERON:0010371,8.37e-27,73;UBERON:0000955,2.84e-26,47;UBERON:0006238,2.84e-26,47;UBERON:0001016,8.48e-26,75;UBERON:0003056,1.42e-25,49;UBERON:0002616,1.79e-25,46;UBERON:0001017,1.14e-24,73;UBERON:0003080,3.00e-22,40;UBERON:0002780,1.19e-21,39;UBERON:0001890,1.19e-21,39;UBERON:0006240,1.19e-21,39;UBERON:0002020,3.30e-20,34;UBERON:0003528,1.85e-17,29;UBERON:0002791,1.85e-17,29;UBERON:0001893,1.85e-17,29;UBERON:0000956,5.54e-14,21;UBERON:0001869,5.54e-14,21;UBERON:0000203,5.54e-14,21;UBERON:0000025,1.51e-13,114;UBERON:0004111,6.85e-13,122;UBERON:0002619,7.83e-12,17;UBERON:0002021,3.55e-08,10;UBERON:0000411,3.55e-08,10;UBERON:0001950,3.55e-08,10;UBERON:0000922,5.35e-08,320;UBERON:0003076,2.72e-07,12;UBERON:0003057,2.72e-07,12
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1908332,3.72699192934609,4.05341522910446,2.18019624948493,3.3879376949519,3.55381353145041,3.65855945745545,1.31534855718921,2.8518863907631,3.92799590160417,2.49133538060766,3.74317033027141,4.91077251803627,2.94379998253335,3.47231899766054,8.99318080576605,4.21076895201735,3.65280791882107,2.67803664896381,1.32354851471709,1.85494268496337
|phase1_expression=0.80074423552397,0,0,0,0,0,0,0,0,0,0,0,0.171200729931206,0,0,0,0,0,0,0,0.425216450755349,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288851619751275,0,0,0,0,0,0,0,0,0,0,0,2.34717403304412,6.97680500417429,7.46933021297204,4.27745777963423,1.95980990275508,4.31257693094915,0,0,0,3.8588915405392,2.57880095944881,3.6097046459421,5.46254444320914,6.87688273053643,3.1691570175309,4.06613438482959,1.77858959222228,0,0,0,1.79760066311043,3.07374644257244,5.39185984004084,7.02030879324791,9.67494822216357,10.5690864229407,7.06779331045163,5.75706756310284,7.18841032636773,11.0306254393203,3.30347642998166,7.02280359468532,7.37311359629969,5.01167893374737,6.03818447775904,9.37644067002168,6.97957497503452,2.25105044012672,5.65353516774197,7.36571463684169,6.83384067835694,7.08317894136142,4.99792875999015,9.67315969366855,0.579728977403356,0.860423876981386,0,0.539703191637817,0,0,0.280888840263504,0.170430322578058,0.259786004602869,0.70667914902068,5.49289337129054,0,0,7.11066703153331,1.29894624606728,2.28023878927589,0,0.11418387971906,1.03575153458869,1.63286352971307,3.64319186208885,2.74018930480927,2.30615497256059,1.80867168663147,3.41007250693544,1.13099932196708,0.988779870937496,2.16899035379867,0,2.10296904931632,1.32504911076236,1.93950101254089,0,18.737971008739,18.431310199584,0,0.11981512450592,0,0,7.63932260964596,13.7250180845588,19.476424577494,18.0777292999968,12.7857728665165,7.89594569326328,9.73447578406546,3.1570202793598,1.99051152976149,0.758168275301024,2.94618598241064,5.07469727554544,4.13823787980251,4.14142898552303,5.72678307775717,6.39543092022482,6.02134485338794,5.528401749024,3.88055056108524,4.95806383745537,3.21480336285293,3.51902248327898,2.19195732427575,7.50727572909114,2.78601733217733,2.88094990971121,1.99034266818493,0,0,0,2.89976081549703,2.11073453982987,3.6012412292203,2.60419209143731,4.13204886669548,2.62254091908543,4.18561100550734,2.14618721119695,3.50296027101508,3.62031669809657,1.47750717671186,1.4592385718254,2.19299981137998,1.53685080703735,1.07365135008297,15.7717461423095,21.6099685996497,0.330418782983798,0.528901133327089,2.13288250535234,2.32236671860439,2.70621668776396,2.21851877085677,1.11189021922435,1.14135375667535,0,2.30578536613615,1.75934646160189,0.198956472041151,0.779856348476481,0.898819408654221,0.648414149624083,0.398282546508734,1.89667900953082,3.65595240351132,1.1270773567308,2.03651327845314,1.74557238450863,1.82353131714828,1.58091342810643,1.18088118383682,1.56998727841375,0.863780147452604,0,0.500535317148282,0.982794975566015,0,0.405720242777006,0.482354319504834,0,0.287696137450811,0,0,1.43768206527355,1.11642284300551,0.624075346229121,0,0,0.482443521363367,3.51031061316549,2.08440552947533,3.09633455239849,2.20668611507745,1.64283173801951,2.84760637651087,1.42826184531608,1.95133647857799,5.35959489961049,4.65075848262427,2.71073106717728,3.11340297959902,4.14443956478149,3.03763023021174,0,0,0.491764273019036,1.10374698521893,9.15138362930414,9.14251155419185,0,1.26235463602186,0.94652465824877,1.17131623288992,0.646270193198397,0.477937595905104,0.668396022247182,0,1.61924280669958,1.46127928955656,1.97643888973262,18.9579576688866,1.84522110770749,1.78065603667255,2.28041743095006,1.97964147567043,0,1.69946445308487,0.604647113929502,0.943025398779491,1.18120757152309,0.922305443831782,1.55056975900933,0.727067458955011,1.06949213515416,0,0,0,4.42571487479924,3.6012218806262,5.30370603509293,5.14408884075822,3.54680467284547,6.0645397984704,5.59466670047211,7.91608867697958,1.40803024838226,3.38931313382112,0.441056796109924,1.31909002353184,2.9063596805263,2.83470747162333,1.55184047204077,1.80554989719567,0.582961673259701,8.52956389248344,0,1.44470807574256,0.740778109478847,0,0.27338845544205,0.228778173206523,0.169978429993855,0,0,0.954670618015114,2.37251995185852,2.64315307264903,2.70013352054503,2.09088296014469,2.18362563746178,2.15782954215713,2.14898984885873,2.87931536182433,1.16653475962614,1.24267862617385,0,2.0932316446157,1.32366792365678,2.33341426012857,1.93739735216597,1.68956125490778,3.16864544343536,1.17183946359555,1.04859344425711,0,0,0,1.21635129174099,1.74608627180206,0.51968329191118,0.358053391334963,0.993406773906324,0.360586348559907,0.295379054349154,0.100966449948148,0.0762068066549998,0.201652370273681,0.194915761479505,0.0962118416403295,0.350630706544707,1.81384306892169,0,0.0897138566094757,0,2.12508553435409,1.68914227906064,1.64836461840539,1.50057865355346,2.50786052017682,14.1187960654267,21.1749608793301,22.9158205375759,18.5601436931183,16.4419804744954,11.3309084608455,11.4753825039407,17.1122057225204,16.7662691324156,16.0505696643064,1.55681021376265,4.78829848081237,3.75613932659095,3.16038732188782,1.46729213839588,2.20612210140017,2.889207461421,3.09052585858341,2.24643446714271,4.29585259998456,3.04175159868288,2.45214243801899,4.02658482120494,3.64943368707755,3.27382173046996,4.28664322154766,4.05595140806994,3.27945674788299,1.64834360321323,3.82717192349433,2.74295401908332,3.72699192934609,4.05341522910446,2.18019624948493,3.3879376949519,3.55381353145041,3.65855945745545,1.31534855718921,2.8518863907631,3.92799590160417,2.49133538060766,3.74317033027141,4.91077251803627,2.94379998253335,3.47231899766054,8.99318080576605,4.21076895201735,3.65280791882107,2.67803664896381,1.32354851471709,1.85494268496337
|short_description=p4@Pcdhga11,p4@Pcdhga12,p4@Pcdhga3,p4@Pcdhga8,p4@Pcdhga9,p4@Pcdhgb6,p4@Pcdhgc3,p4@Pcdhgc4,p4@Pcdhgc5
}}
}}

Latest revision as of 05:55, 27 September 2015

Short description:p4@Pcdhga11, p4@Pcdhga12, p4@Pcdhga3, p4@Pcdhga8, p4@Pcdhga9, p4@Pcdhgb6, p4@Pcdhgc3, p4@Pcdhgc4, p4@Pcdhgc5
Species:Mouse (Mus musculus)
DPI dataset: NA
TSS-like-by-RIKEN-classifier(Yes/No): NA
DHS support(Yes/No): NA
Description: CAGE_peak_4_at_Pcdhga11_5end, CAGE_peak_4_at_Pcdhga12_5end, CAGE_peak_4_at_Pcdhga3_5end, CAGE_peak_4_at_Pcdhga8_5end, CAGE_peak_4_at_Pcdhga9_5end, CAGE_peak_4_at_Pcdhgb6_5end, CAGE_peak_4_at_Pcdhgc3_5end, CAGE_peak_4_at_Pcdhgc4_5end, CAGE_peak_4_at_Pcdhgc5_5end
Coexpression cluster:MCL_coexpression_mm9:1715
Association with transcript: -5bp_to_ENSMUST00000061279, NM_033594, uc008erb.1_5end
EntrezGene:93703,93706,93707,93708,93711,93716,93717,93723,93724
Link to Zenbu:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression

Sample

p4@Pcdhga11p4@Pcdhga12p4@Pcdhga3p4@Pcdhga8p4@Pcdhga9p4@Pcdhgb6p4@Pcdhgc3p4@Pcdhgc4p4@Pcdhgc5

Atoh1+ Inner ear hair cells - organ of corti, pool1.CNhs12533.12158-128G70.80
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13242.11850-124I50.00
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13233.11851-124I60.00
CD326+ enterocyte, pool1.CNhs13542.11848-124I30.00
CD326+ enterocyte, pool2.CNhs13197.11849-124I40.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13236.11852-124I70.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13210.11853-124I80.00
CD4+CD25+ regulatory T cells, pool2 (Balb_cAJcl).CNhs13221.11818-124E90.00
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J).CNhs13219.11816-124E70.00
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl).CNhs13226.11820-124F20.00
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J).CNhs13218.11815-124E60.00
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl).CNhs13225.11819-124F10.00
CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J).CNhs13217.11813-124E40.17
CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl).CNhs13220.11817-124E80.00
CD41+ megakaryocyte cancer, donor1.CNhs13079.11774-124A10.00
CD41+ megakaryocyte cancer, donor2.CNhs13213.11776-124A30.00
CD41+ megakaryocyte cancer, donor3.CNhs13506.11778-124A50.00
CD41+ megakaryocyte control, donor1.CNhs13212.11775-124A20.00
CD41+ megakaryocyte control, donor2.CNhs13214.11777-124A40.00
CD41+ megakaryocyte control, donor3.CNhs13201.11779-124A60.00
Clontech Mouse Universal Reference Total RNA, pool1.CNhs10609.10001-101A30.43
EBF KO HPCs induced to T cell, 00hr00min, biol_rep1.CNhs11058.12972-138H20.00
EBF KO HPCs induced to T cell, 00hr00min, biol_rep2.CNhs12980.12988-138I90.00
Follicle Associated Epithelium, pool2.CNhs13211.10262-104D10.00
Follicle Associated Epithelium, pool3.CNhs13200.10263-104D20.00
GP2+ M cell, pool1.CNhs13228.11845-124H90.00
GP2+ M cell, pool2.CNhs13231.11846-124I10.00
GP2+ M cell, pool3.CNhs13240.11847-124I20.00
Ileum epithelium, pool1.CNhs13199.10252-104B90.00
Ileum epithelium, pool2.CNhs13232.10253-104C10.00
Ileum epithelium, treated with RANKL, day03, pool3.CNhs13234.10260-104C80.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep1.CNhs12449.13063-139I30.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep2.CNhs12668.13129-140G60.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep3.CNhs12770.13195-141E90.00
Lgr5 positive intestinal stem cells, pool1.CNhs12555.12228-129F50.29
Lgr5 positive intestinal stem cells, pool2.CNhs12556.12229-129F60.00
Lgr5 positive intestinal stem cells, pool3.CNhs12557.12230-129F70.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL).CNhs12539.12159-128G80.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL).CNhs12198.12161-128H10.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL).CNhs12542.12163-128H30.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor1 (4,5,6PBS).CNhs12540.12160-128G90.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor2 (0127 PBS).CNhs12541.12162-128H20.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor3 (0128 PBS).CNhs12543.12164-128H40.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep1.CNhs11055.11484-119D80.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep2.CNhs11056.11485-119D90.00
Mouse Aortic Smooth Muscle cells, donor1.CNhs11297.11299-117B30.00
Mouse Astrocytes - cerebellar, donor1.CNhs13077.11708-123B72.35
Mouse Astrocytes - cerebellar, donor2.CNhs12076.11550-120C26.98
Mouse Astrocytes - hippocampus, donor1.CNhs12129.11709-123B87.47
Mouse Astrocytes - hippocampus, donor2.CNhs12077.11551-120C34.28
Mouse Astrocytes, donor2.CNhs12078.11552-120C41.96
Mouse Astrocytes, donor3.CNhs12107.11633-122C44.31
Mouse CD19+ B Cells, donor1.CNhs13531.11856-125A20.00
Mouse CD4+ T Cells, donor1.CNhs13509.11854-124I90.00
Mouse CD8+ T Cells, donor1.CNhs13511.11855-125A10.00
Mouse Cardiac Myocytes, donor1.CNhs12355.11711-123C13.86
Mouse Cardiac Myocytes, donor2.CNhs12356.11729-123E12.58
Mouse Cardiac Myocytes, donor3.CNhs12353.11634-122C53.61
Mouse Granule cells, donor1.CNhs12131.11713-123C35.46
Mouse Granule cells, donor2.CNhs12357.11731-123E36.88
Mouse Granule cells, donor3.CNhs12108.11636-122C73.17
Mouse Meningeal cells, donor1.CNhs12132.11716-123C64.07
Mouse Meningeal cells, donor3.CNhs12109.11639-122D11.78
Mouse Mesenchymal stem cells - bone marrow derived, donor1.CNhs12628.11717-123C70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor2.CNhs12633.11735-123E70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor3.CNhs12616.11640-122D20.00
Mouse Microglia, donor1.CNhs12629.11718-123C81.80
Mouse Microglia, donor2.CNhs12634.11736-123E83.07
Mouse Neurons - cortical, donor1.CNhs12025.11724-123D55.39
Mouse Neurons - cortical, donor2.CNhs11947.11742-123F57.02
Mouse Neurons - cortical, donor3.CNhs12112.11647-122D99.67
Mouse Neurons - dorsal spinal cord, donor2.CNhs12635.11738-123F110.57
Mouse Neurons - dorsal spinal cord, donor3.CNhs12618.11643-122D57.07
Mouse Neurons - hippocampal, donor1.CNhs12133.11721-123D25.76
Mouse Neurons - hippocampal, donor2.CNhs12359.11739-123F27.19
Mouse Neurons - hippocampal, donor3.CNhs12110.11644-122D611.03
Mouse Neurons - raphe, donor1.CNhs12631.11722-123D33.30
Mouse Neurons - raphe, donor2.CNhs12636.11740-123F37.02
Mouse Neurons - raphe, donor3.CNhs12619.11645-122D77.37
Mouse Neurons - striatal, donor1.CNhs12134.11723-123D45.01
Mouse Neurons - striatal, donor2.CNhs12360.11741-123F46.04
Mouse Neurons - striatal, donor3.CNhs12111.11646-122D89.38
Mouse Neurons - substantia nigra, donor4, tech_rep1.CNhs12612.11489-119E46.98
Mouse Neurons - substantia nigra, donor5.CNhs12614.11490-119E52.25
Mouse Neurons - substantia nigra, donor6.CNhs12643.11770-123I65.65
Mouse Neurons - ventral spinal cord, donor1.CNhs12632.11725-123D67.37
Mouse Neurons - ventral spinal cord, donor2.CNhs12638.11743-123F66.83
Mouse Neurons - ventral spinal cord, donor3.CNhs12113.11648-122E17.08
Mouse Schwann, donor1.CNhs12507.11728-123D95.00
Mouse Schwann, donor2.CNhs12573.11746-123F99.67
Mouse hepatic Sinusoidal Endothelial Cells, donor1.CNhs13209.11830-124G30.58
Mouse hepatic Stellate Cells (lipocyte), donor1.CNhs13196.11825-124F70.86
Mouse hepatocyte, donor1.CNhs13078.11714-123C40.00
Mouse hepatocyte, donor3.CNhs12615.11637-122C80.54
Mouse hepatocyte, donor6.CNhs13090.11822-124F40.00
Mouse hepatocyte, donor8.CNhs13091.11824-124F60.00
SABiosciences XpressRef Mouse Universal Total RNA, pool1.CNhs10611.10003-101A70.28
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep1 (000hC4).CNhs11939.12338-130I70.17
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep2 (000hC5).CNhs13275.12460-132E30.26
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep3 (000hC6).CNhs13324.12582-133I80.71
Sox2+ Supporting cells - organ of corti, pool1.CNhs12532.12157-128G65.49
TSt-4/DLL1 feeder cells, biol_rep1.CNhs13407.12971-138H10.00
TSt-4/DLL1 feeder cells, biol_rep2.CNhs13408.12987-138I80.00
TSt-4/DLL1 feeder cells, biol_rep3.CNhs13409.13003-139B67.11
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep1.CNhs13739.13367-143G11.30
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep2.CNhs13740.13368-143G22.28
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep3.CNhs13741.13369-143G30.00
Universal RNA - Mouse Normal Tissues Biochain, pool1.CNhs10613.10008-101B60.11
accessory axillary lymph node, adult.CNhs10475.1063-29H91.04
adrenal gland, adult.CNhs10508.49-24D71.63
adrenal gland, embryo E14.CNhs11038.406-44C53.64
adrenal gland, embryo E16.CNhs11004.1254-43D62.74
adrenal gland, embryo E17.CNhs11043.1263-45I12.31
adrenal gland, embryo E18.CNhs11026.1262-18F51.81
adrenal gland, neonate N00.CNhs11191.1311-23C13.41
adrenal gland, neonate N25.CNhs11223.1377-27I31.13
amnion, adult pregnant day17.5.CNhs10488.583-22A80.99
aorta, adult.CNhs10498.46-23H12.17
bone (os femoris), adult.CNhs10483.56-12G20.00
bone (os femoris), neonate N02.CNhs11227.1985-43F52.10
bone (os femoris), neonate N16.CNhs11225.1525-43A61.33
bone (os femoris), neonate N20.CNhs11195.1350-25C31.94
cecum, adult.CNhs10467.37-13H40.00
cerebellum, adult.CNhs10494.15-8B218.74
cerebellum, neonate N30.CNhs11135.1395-42I218.43
colon, adult.CNhs10468.36-18H70.00
common myeloid progenitor CMP, biol_rep1.CNhs12550.12122-128C70.12
common myeloid progenitor CMP, biol_rep2.CNhs12203.12125-128D10.00
common myeloid progenitor CMP, biol_rep3.CNhs12551.12128-128D40.00
corpora quadrigemina, adult.CNhs10501.16-22A47.64
corpus striatum, adult.CNhs10487.19-21D813.73
corpus striatum, neonate N00.CNhs11226.630-43F119.48
cortex, adult.CNhs10473.12-14D518.08
cortex, neonate N30.CNhs11107.1392-42F212.79
diencephalon, adult.CNhs10482.20-12F27.90
diencephalon, neonate N30.CNhs11201.1388-42B29.73
epididymis and seminiferous tubule, neonate N00.CNhs11218.1310-23B13.16
epididymis and seminiferous tubule, neonate N30.CNhs11199.1387-42A21.99
epididymis, adult.CNhs10490.58-23B20.76
eyeball, adult.CNhs10484.31-12G42.95
eyeball, embryo E12.CNhs11016.345-16C65.07
eyeball, embryo E14.CNhs10521.399-16E24.14
eyeball, embryo E15.CNhs10593.426-16C94.14
eyeball, embryo E17.CNhs11023.1261-18D45.73
eyeball, neonate N00.CNhs11207.633-15C66.40
eyeball, neonate N01.CNhs11140.1532-43E76.02
eyeball, neonate N02.CNhs11205.1551-44G85.53
eyeball, neonate N16.CNhs11188.777-19A23.88
forelimb, embryo E11.CNhs10596.335-25E24.96
forelimb, embryo E12.CNhs10600.359-14H23.21
forelimb, embryo E13.CNhs10589.384-1E23.52
forelimb, embryo E14.CNhs10577.413-26A82.19
forelimb, embryo E15.CNhs11007.437-20E77.51
forelimb, embryo E17.CNhs10598.1517-43C42.79
forelimb, embryo E18.CNhs11008.1520-43B52.88
gonad, embryo E13.CNhs11044.1564-45I61.99
granulocyte macrophage progenitor GMP, biol_rep1.CNhs12206.12123-128C80.00
granulocyte macrophage progenitor GMP, biol_rep2.CNhs12202.12126-128D20.00
granulocyte macrophage progenitor GMP, biol_rep3.CNhs11928.12129-128D50.00
heart, embryo E11.CNhs10586.331-24E92.90
heart, embryo E12.CNhs11015.353-12F52.11
heart, embryo E13.CNhs11013.376-3I93.60
heart, embryo E14.CNhs10597.403-26D42.60
heart, embryo E15.CNhs11017.431-16C84.13
heart, embryo E16.CNhs11021.457-17C62.62
heart, embryo E17.CNhs11025.479-18E54.19
heart, embryo E18.CNhs11030.1283-20G32.15
heart, neonate N00.CNhs11213.639-21E33.50
heart, neonate N03.CNhs11221.1349-25I23.62
heart, neonate N10.CNhs11118.749-24G11.48
heart, neonate N16.CNhs11209.782-15G11.46
heart, neonate N20.CNhs11127.821-26I62.19
heart, neonate N25.CNhs11196.1351-25D31.54
heart, neonate N30.CNhs11202.1390-42D21.07
hippocampus, adult.CNhs10478.13-16E815.77
hippocampus, neonate N00.CNhs11228.627-43G121.61
intestinal mucosa, adult.CNhs10506.860-29I30.33
intestine, adult.CNhs10496.178-9A30.53
intestine, embryo E12.CNhs11019.1251-16I52.13
intestine, embryo E13.CNhs11010.381-16D52.32
intestine, embryo E15.CNhs10602.976-16D82.71
intestine, embryo E16.CNhs10585.463-22H42.22
intestine, embryo E17.CNhs10582.482-18D31.11
intestine, embryo E18.CNhs10526.1289-20F71.14
intestine, neonate N00.CNhs11126.644-26D10.00
intestine, neonate N01.CNhs11192.1322-23E92.31
intestine, neonate N06.CNhs11102.688-20B81.76
intestine, neonate N07.CNhs11095.720-20F20.20
intestine, neonate N10.CNhs11098.755-23A50.78
intestine, neonate N20.CNhs11187.827-18D10.90
intestine, neonate N25.CNhs11121.1352-25E30.65
intestine, neonate N30.CNhs11131.1384-42G10.40
kidney, embryo E14.CNhs10606.411-4I91.90
kidney, embryo E15.CNhs10997.434-16F83.66
kidney, embryo E16.CNhs10584.464-22A51.13
kidney, embryo E17.CNhs11028.483-18I22.04
kidney, embryo E18.CNhs11001.1288-20C71.75
kidney, neonate N00.CNhs11214.646-21G71.82
kidney, neonate N10.CNhs11206.758-6D51.58
kidney, neonate N20.CNhs11113.832-19I11.18
kidney, neonate N25.CNhs11122.1353-25F31.57
kidney, neonate N30.CNhs11203.1385-42H10.86
liver, adult pregnant day01.CNhs10466.508-5B20.00
liver, embryo E12.CNhs10601.355-15F80.50
liver, embryo E13.CNhs10524.378-3H60.98
liver, embryo E14.CNhs10594.409-16E10.00
liver, embryo E15.CNhs10520.433-16D70.41
liver, embryo E16.CNhs10523.462-17F50.48
liver, embryo E17.CNhs10510.481-18A30.00
liver, embryo E18.CNhs10579.499-43G40.29
liver, neonate N00.CNhs11117.641-24F40.00
liver, neonate N03.CNhs11123.1345-25G20.00
liver, neonate N06.CNhs11101.684-20A81.44
liver, neonate N07.CNhs11103.716-20H21.12
liver, neonate N10.CNhs11115.751-24B90.62
liver, neonate N20.CNhs11220.823-25A30.00
liver, neonate N25.CNhs11198.1368-26H10.00
liver, neonate N30.CNhs11106.1382-42D10.48
lung, adult.CNhs10474.28-22B13.51
lung, embryo E12.CNhs10522.354-16G22.08
lung, embryo E14.CNhs10604.404-26F83.10
lung, embryo E15.CNhs11020.432-17C52.21
lung, embryo E16.CNhs10998.458-17B61.64
lung, embryo E17.CNhs10605.480-44A62.85
lung, embryo E18.CNhs10583.1287-20I61.43
lung, neonate N00.CNhs11224.640-42C61.95
lung, neonate N06.CNhs11212.683-20E55.36
lung, neonate N07.CNhs11111.715-19A34.65
lung, neonate N10.CNhs11219.750-23E62.71
lung, neonate N20.CNhs11109.822-18A43.11
lung, neonate N25.CNhs11119.1359-25C74.14
lung, neonate N30.CNhs11133.1394-42H23.04
macrophage, bone marrow derived, pool1.CNhs11457.3560-170A10.00
macrophage, bone marrow derived, pool2.CNhs11532.3632-171A10.00
mammary gland, adult lactating day02.CNhs10480.595-22B60.49
mammary gland, adult pregnant day19.CNhs10476.588-5H21.10
medulla oblongata, adult.CNhs10477.17-12C29.15
medulla oblongata, neonate N30.CNhs11200.1396-42A39.14
mouse fibroblast cell line: CRL-1658 NIH/3T3.CNhs11093.1830-49C70.00
muscle (biceps femoris), neonate N30.CNhs11129.1389-42C21.26
neurospheres - enteric neuron derived, biol_rep1.CNhs13087.11810-124E10.95
neurospheres - enteric neuron derived, biol_rep2.CNhs13088.11811-124E21.17
neurospheres - enteric neuron derived, biol_rep3.CNhs13089.11812-124E30.65
neurospheres - parasympathetic neuron derived, biol_rep1.CNhs13084.11807-124D70.48
neurospheres - parasympathetic neuron derived, biol_rep2.CNhs13085.11808-124D80.67
neurospheres - parasympathetic neuron derived, biol_rep3.CNhs13086.11809-124D90.00
neurospheres - sympathetic neuron derived, biol_rep1.CNhs13081.11804-124D41.62
neurospheres - sympathetic neuron derived, biol_rep2.CNhs13082.11805-124D51.46
neurospheres - sympathetic neuron derived, biol_rep3.CNhs13083.11806-124D61.98
olfactory brain, adult.CNhs10489.18-22I918.96
ovary, adult.CNhs10507.91-2I71.85
ovary, embryo E18.CNhs11040.505-44H71.78
ovary, neonate N00.CNhs11217.1299-22I42.28
oviduct, adult pregnant day01.CNhs10500.988-6G61.98
pancreas, adult.CNhs10486.34-16E40.00
pancreas, embryo E14.CNhs11012.405-44F41.70
pancreas, embryo E15.CNhs11042.1556-45F20.60
pancreas, embryo E16.CNhs11003.460-26E50.94
pancreas, embryo E17.CNhs10599.1558-45G31.18
pancreas, embryo E18.CNhs10580.1535-43I70.92
pancreas, neonate N00.CNhs11105.645-26G91.55
pancreas, neonate N01.CNhs11138.1531-43D70.73
pancreas, neonate N02.CNhs11139.1539-43D81.07
pancreas, neonate N16.CNhs11136.787-43B60.00
pancreas, neonate N25.CNhs11094.1555-45E20.00
pancreas, neonate N30.CNhs11182.1548-44H50.00
pituitary gland, adult.CNhs10493.21-1G84.43
pituitary gland, embryo E12.CNhs11018.346-16E63.60
pituitary gland, embryo E13.CNhs11009.370-44C75.30
pituitary gland, embryo E14.CNhs11037.398-44A55.14
pituitary gland, embryo E15.CNhs10592.427-16B93.55
pituitary gland, embryo E16.CNhs11036.449-43F66.06
pituitary gland, embryo E17.CNhs11039.1265-44F55.59
pituitary gland, neonate N00.CNhs11190.1308-22E97.92
placenta, adult pregnant day10.CNhs10472.539-13I71.41
placenta, adult pregnant day17.CNhs10464.577-18G33.39
prostate, adult.CNhs10470.859-1F80.44
skin, adult.CNhs10492.30-1C31.32
skin, neonate N00.CNhs11124.650-25G42.91
skin, neonate N03.CNhs11215.662-22H32.83
skin, neonate N06.CNhs11097.693-20I51.55
skin, neonate N10.CNhs11108.762-6C41.81
small intestine, neonate N16.CNhs11114.790-21I10.58
spinal cord, adult.CNhs10505.24-13C98.53
spleen, adult.CNhs10465.25-2G20.00
spleen, embryo E16.CNhs11035.461-43C11.44
spleen, embryo E18.CNhs11011.1271-21F20.74
spleen, neonate N10.CNhs11116.752-24D10.00
spleen, neonate N20.CNhs11112.824-19H10.27
spleen, neonate N25.CNhs11099.1354-25G30.23
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep1.CNhs12534.12121-128C60.17
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep2.CNhs12535.12124-128C90.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep3.CNhs12536.12127-128D30.00
stomach, adult.CNhs10503.33-1H60.95
stomach, embryo E12.CNhs10588.356-43E32.37
stomach, embryo E15.CNhs10603.1252-16G82.64
stomach, embryo E16.CNhs11022.459-17D42.70
stomach, embryo E17.CNhs11006.1035-18D52.09
stomach, embryo E18.CNhs10999.1286-20C62.18
stomach, neonate N03.CNhs11193.1340-24B82.16
stomach, neonate N07.CNhs11210.718-18A92.15
stomach, neonate N25.CNhs11104.1355-25E42.88
stomach, neonate N30.CNhs11134.1386-42I11.17
submandibular gland, adult.CNhs10469.59-29C11.24
testis, adult.CNhs10504.57-7G50.00
testis, embryo E13.CNhs11031.389-23F52.09
testis, embryo E15.CNhs11034.443-27C51.32
testis, embryo E16.CNhs11033.470-26G52.33
testis, embryo E17.CNhs11029.486-18I51.94
testis, embryo E18.CNhs11027.503-18G51.69
testis, neonate N00.CNhs11189.1300-22B73.17
testis, neonate N07.CNhs11222.726-26I41.17
testis, neonate N10.CNhs11204.763-44D91.05
testis, neonate N20.CNhs11110.839-18H30.00
testis, neonate N30.CNhs11130.1391-42E20.00
thymus, adult.CNhs10471.38-12B50.00
thymus, embryo E14.CNhs11041.402-44I41.22
thymus, embryo E15.CNhs11005.430-45I21.75
thymus, embryo E16.CNhs11002.456-26C50.52
thymus, embryo E17.CNhs10581.478-18C10.36
thymus, embryo E18.CNhs10595.1273-19G40.99
thymus, neonate N02.CNhs11181.1541-43F80.36
thymus, neonate N03.CNhs11137.2104-43C70.30
thymus, neonate N06.CNhs11197.681-26C40.10
thymus, neonate N07.CNhs11211.713-19D30.08
thymus, neonate N10.CNhs11194.748-24E40.20
thymus, neonate N20.CNhs11186.820-7A20.19
thymus, neonate N25.CNhs11125.1362-25G70.10
thymus, neonate N30.CNhs11132.1393-42G20.35
tongue, adult.CNhs10499.32-1B41.81
trophoblast stem cell line B1 differentiation, day00, biol_rep1.CNhs13526.13297-142H30.00
trophoblast stem cell line R1AB differentiation, day00, biol_rep1.CNhs13481.13283-142F70.09
trophoblast stem cell line Rybp differentiation, day00, biol_rep1.CNhs13519.13290-142G50.00
urinary bladder, adult.CNhs10481.879-12E42.13
uterus, adult pregnant day19.CNhs10497.590-15F51.69
uterus, adult.CNhs10509.92-27E51.65
vagina, adult.CNhs10502.89-27D51.50
vesicular gland, adult.CNhs10491.51-27F82.51
visual cortex - wildtype, neonate N15, donor1.CNhs13031.10235-104A114.12
visual cortex - wildtype, neonate N15, donor2.CNhs13032.10236-104A221.17
visual cortex - wildtype, neonate N15, donor3.CNhs13033.10237-104A322.92
visual cortex - wildtype, neonate N15, donor5.CNhs13820.10349-105D718.56
visual cortex - wildtype, neonate N30, donor1.CNhs13034.10238-104A416.44
visual cortex - wildtype, neonate N30, donor2.CNhs13035.10239-104A511.33
visual cortex - wildtype, neonate N30, donor3.CNhs13036.10240-104A611.48
visual cortex - wildtype, neonate N60-70, donor1.CNhs13037.10241-104A717.11
visual cortex - wildtype, neonate N60-70, donor2.CNhs13038.10242-104A816.77
visual cortex - wildtype, neonate N60-70, donor3.CNhs13039.10243-104A916.05
whole body, embryo E11.CNhs11014.324-5I81.56
whole body, embryo E12.CNhs10587.857-27C94.79
whole body, embryo E13.CNhs10512.372-23H23.76
whole body, embryo E14.5.CNhs10578.420-27D23.16
whole body, embryo E14.CNhs10519.395-14B11.47
whole body, embryo E16.CNhs10514.453-14F22.21
whole body, embryo E17.5, pool1 (internal control).CNhs10479.3139-67G52.89
whole body, embryo E17.5, pool1 (internal control).CNhs10495.3139-67G53.09
whole body, embryo E17.5, pool1 (internal control).CNhs10511.3139-67G52.25
whole body, embryo E17.5, pool1 (internal control).CNhs10527.3139-67G54.30
whole body, embryo E17.5, pool1 (internal control).CNhs10591.3139-67G53.04
whole body, embryo E17.5, pool1 (internal control).CNhs10607.3139-67G52.45
whole body, embryo E17.5, pool1 (internal control).CNhs10623.3139-67G54.03
whole body, embryo E17.5, pool1 (internal control).CNhs10639.3139-67G53.65
whole body, embryo E17.5, pool1 (internal control).CNhs10655.3139-67G53.27
whole body, embryo E17.5, pool1 (internal control).CNhs10725.3139-67G54.29
whole body, embryo E17.5, pool1 (internal control).CNhs10749.3139-67G54.06
whole body, embryo E17.5, pool1 (internal control).CNhs10840.3139-67G53.28
whole body, embryo E17.5, pool1 (internal control).CNhs10856.3139-67G51.65
whole body, embryo E17.5, pool1 (internal control).CNhs10880.3139-67G53.83
whole body, embryo E17.5, pool1 (internal control).CNhs11000.3139-67G52.74
whole body, embryo E17.5, pool1 (internal control).CNhs11024.3139-67G53.73
whole body, embryo E17.5, pool1 (internal control).CNhs11032.3139-67G54.05
whole body, embryo E17.5, pool1 (internal control).CNhs11048.3139-67G52.18
whole body, embryo E17.5, pool1 (internal control).CNhs11072.3139-67G53.39
whole body, embryo E17.5, pool1 (internal control).CNhs11080.3139-67G53.55
whole body, embryo E17.5, pool1 (internal control).CNhs11096.3139-67G53.66
whole body, embryo E17.5, pool1 (internal control).CNhs11120.3139-67G51.32
whole body, embryo E17.5, pool1 (internal control).CNhs11128.3139-67G52.85
whole body, embryo E17.5, pool1 (internal control).CNhs11184.3139-67G53.93
whole body, embryo E17.5, pool1 (internal control).CNhs11208.3139-67G52.49
whole body, embryo E17.5, pool1 (internal control).CNhs11216.3139-67G53.74
whole body, embryo E17.5, pool1 (internal control).CNhs11246.3139-67G54.91
whole body, embryo E17.5, pool1 (internal control).CNhs11278.3139-67G52.94
whole body, embryo E17.5.CNhs10513.490-9F93.47
whole body, embryo E17.CNhs10517.475-3I58.99
whole body, embryo E18.CNhs10516.493-3B34.21
whole body, neonate N00.CNhs10525.657-19C23.65
whole body, neonate N01.CNhs10576.659-23C62.68
whole body, neonate N06.CNhs10515.692-21D11.32
whole body, neonate N10.CNhs10518.761-6B41.85





  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Cell type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)5.58e-1123
neuroblast (sensu Vertebrata)5.58e-1123
ectodermal cell4.79e-0844
neurectodermal cell4.79e-0844
neural cell1.09e-0743

Uber anatomy
Ontology termp-valuen
neurectoderm7.93e-3064
neural plate7.93e-3064
presumptive neural plate7.93e-3064
regional part of nervous system8.34e-3054
structure with developmental contribution from neural crest2.56e-2992
neural tube3.96e-2952
neural rod3.96e-2952
future spinal cord3.96e-2952
neural keel3.96e-2952
ectoderm-derived structure4.31e-2795
ectoderm4.31e-2795
presumptive ectoderm4.31e-2795
ecto-epithelium8.37e-2773
brain2.84e-2647
future brain2.84e-2647
nervous system8.48e-2675
pre-chordal neural plate1.42e-2549
regional part of brain1.79e-2546
central nervous system1.14e-2473
anterior neural tube3.00e-2240
regional part of forebrain1.19e-2139
forebrain1.19e-2139
future forebrain1.19e-2139
gray matter3.30e-2034
brain grey matter1.85e-1729
regional part of telencephalon1.85e-1729
telencephalon1.85e-1729
cerebral cortex5.54e-1421
cerebral hemisphere5.54e-1421
pallium5.54e-1421
tube1.51e-13114
anatomical conduit6.85e-13122
regional part of cerebral cortex7.83e-1217
occipital lobe3.55e-0810
visual cortex3.55e-0810
neocortex3.55e-0810
embryo5.35e-08320
posterior neural tube2.72e-0712
chordal neural plate2.72e-0712
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