FFCP PHASE1:Mm9::chr8:125778069..125778097,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=72325 | |EntrezGene=72325 | ||
|HGNC= | |HGNC= | ||
|TSSclassifier=NA | |||
|UniProt=Q3U280,Q8C190,D6RGB6 | |UniProt=Q3U280,Q8C190,D6RGB6 | ||
|association_with_transcript=0bp_to_ENSMUST00000117643,NM_028200,uc009nus.2,uc009nut.2,uc009nuu.2,uc009nuv.2,uc009nuw.2,uc009nux.2,uc009nuz.2_5end | |association_with_transcript=0bp_to_ENSMUST00000117643,NM_028200,uc009nus.2,uc009nut.2,uc009nuu.2,uc009nuv.2,uc009nuw.2,uc009nux.2,uc009nuz.2_5end | ||
|cluster_id=chr8:125778069..125778097,- | |||
|description=CAGE_peak_2_at_1300018I17Rik_5end | |description=CAGE_peak_2_at_1300018I17Rik_5end | ||
|id=chr8:125778069..125778097,- | |id=chr8:125778069..125778097,- | ||
|ontology_enrichment_celltype=CL:0000540!8.14e-08!33;CL:0000047!8.14e-08!33;CL:0000031!8.14e-08!33;CL:0000404!8.14e-08!33;CL:0000117!1.06e-07!23;CL:0000337!1.06e-07!23 | |ontology_enrichment_celltype=CL:0000540!8.14e-08!33;CL:0000047!8.14e-08!33;CL:0000031!8.14e-08!33;CL:0000404!8.14e-08!33;CL:0000117!1.06e-07!23;CL:0000337!1.06e-07!23 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,6.68e-08,33;CL:0000047,6.68e-08,33;CL:0000031,6.68e-08,33;CL:0000404,6.68e-08,33;CL:0000117,6.86e-08,23;CL:0000337,6.86e-08,23 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.90e-17!73;UBERON:0005743!2.90e-17!73;UBERON:0000153!5.56e-17!94;UBERON:0001049!8.11e-17!52;UBERON:0005068!8.11e-17!52;UBERON:0006241!8.11e-17!52;UBERON:0007135!8.11e-17!52;UBERON:0007811!2.73e-16!86;UBERON:0000073!2.80e-16!75;UBERON:0001016!2.80e-16!75;UBERON:0000033!2.73e-15!63;UBERON:0000955!3.55e-15!50;UBERON:0006238!3.55e-15!50;UBERON:0003056!4.21e-15!49;UBERON:0004121!5.31e-15!102;UBERON:0000924!5.31e-15!102;UBERON:0006601!5.31e-15!102;UBERON:0002346!9.19e-15!71;UBERON:0003075!9.19e-15!71;UBERON:0007284!9.19e-15!71;UBERON:0002616!1.61e-14!49;UBERON:0003080!2.14e-14!40;UBERON:0002780!5.01e-14!39;UBERON:0001890!5.01e-14!39;UBERON:0006240!5.01e-14!39;UBERON:0002020!2.73e-13!34;UBERON:0002791!4.18e-12!29;UBERON:0003528!4.18e-12!29;UBERON:0001893!4.18e-12!29;UBERON:0000956!7.00e-10!21;UBERON:0001869!7.00e-10!21;UBERON:0000203!7.00e-10!21;UBERON:0002619!8.41e-08!17;UBERON:0002021!5.16e-07!10;UBERON:0000411!5.16e-07!10;UBERON:0001950!5.16e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010371,2.67e-17,73;UBERON:0002346,3.44e-17,64;UBERON:0003075,3.44e-17,64;UBERON:0007284,3.44e-17,64;UBERON:0001017,4.21e-17,73;UBERON:0004121,1.09e-16,95;UBERON:0000924,1.09e-16,95;UBERON:0006601,1.09e-16,95;UBERON:0001049,1.21e-16,52;UBERON:0005068,1.21e-16,52;UBERON:0006241,1.21e-16,52;UBERON:0007135,1.21e-16,52;UBERON:0001016,4.02e-16,75;UBERON:0000073,7.56e-16,54;UBERON:0000955,9.38e-16,47;UBERON:0006238,9.38e-16,47;UBERON:0002616,4.45e-15,46;UBERON:0003056,6.36e-15,49;UBERON:0003080,3.43e-14,40;UBERON:0002780,8.05e-14,39;UBERON:0001890,8.05e-14,39;UBERON:0006240,8.05e-14,39;UBERON:0002020,3.42e-13,34;UBERON:0003528,5.40e-12,29;UBERON:0002791,5.40e-12,29;UBERON:0001893,5.40e-12,29;UBERON:0010314,1.02e-10,92;UBERON:0000956,9.61e-10,21;UBERON:0001869,9.61e-10,21;UBERON:0000203,9.61e-10,21;UBERON:0002619,1.18e-07,17;UBERON:0002021,4.64e-07,10;UBERON:0000411,4.64e-07,10;UBERON:0001950,4.64e-07,10 | |||
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| ||
|short_description=p2@1300018I17Rik | |short_description=p2@1300018I17Rik | ||
}} | }} |
Latest revision as of 16:46, 1 October 2015
Short description: | p2@1300018I17Rik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_1300018I17Rik_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000117643, NM_028200, uc009nus.2, uc009nut.2, uc009nuu.2, uc009nuv.2, uc009nuw.2, uc009nux.2, uc009nuz.2_5end |
EntrezGene: | 1300018I17Rik |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 6.68e-08 | 33 |
neuronal stem cell | 6.68e-08 | 33 |
neuroblast | 6.68e-08 | 33 |
electrically signaling cell | 6.68e-08 | 33 |
CNS neuron (sensu Vertebrata) | 6.86e-08 | 23 |
neuroblast (sensu Vertebrata) | 6.86e-08 | 23 |
Ontology term | p-value | n |
---|---|---|
ecto-epithelium | 2.67e-17 | 73 |
neurectoderm | 3.44e-17 | 64 |
neural plate | 3.44e-17 | 64 |
presumptive neural plate | 3.44e-17 | 64 |
central nervous system | 4.21e-17 | 73 |
ectoderm-derived structure | 1.09e-16 | 95 |
ectoderm | 1.09e-16 | 95 |
presumptive ectoderm | 1.09e-16 | 95 |
neural tube | 1.21e-16 | 52 |
neural rod | 1.21e-16 | 52 |
future spinal cord | 1.21e-16 | 52 |
neural keel | 1.21e-16 | 52 |
nervous system | 4.02e-16 | 75 |
regional part of nervous system | 7.56e-16 | 54 |
brain | 9.38e-16 | 47 |
future brain | 9.38e-16 | 47 |
regional part of brain | 4.45e-15 | 46 |
pre-chordal neural plate | 6.36e-15 | 49 |
anterior neural tube | 3.43e-14 | 40 |
regional part of forebrain | 8.05e-14 | 39 |
forebrain | 8.05e-14 | 39 |
future forebrain | 8.05e-14 | 39 |
gray matter | 3.42e-13 | 34 |
brain grey matter | 5.40e-12 | 29 |
regional part of telencephalon | 5.40e-12 | 29 |
telencephalon | 5.40e-12 | 29 |
structure with developmental contribution from neural crest | 1.02e-10 | 92 |
cerebral cortex | 9.61e-10 | 21 |
cerebral hemisphere | 9.61e-10 | 21 |
pallium | 9.61e-10 | 21 |
regional part of cerebral cortex | 1.18e-07 | 17 |
occipital lobe | 4.64e-07 | 10 |
visual cortex | 4.64e-07 | 10 |
neocortex | 4.64e-07 | 10 |