FFCP PHASE1:Mm9::chrX:149574484..149574554,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=245670 | |EntrezGene=245670 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |MCL_coexpression_id=1 | ||
|TSSclassifier=NA | |||
|UniProt=Q6NTA4,G3UYP1 | |UniProt=Q6NTA4,G3UYP1 | ||
|association_with_transcript=0bp_to_ENSMUST00000039720,ENSMUST00000144175,NM_001004154,uc012hqx.1_5end | |association_with_transcript=0bp_to_ENSMUST00000039720,ENSMUST00000144175,NM_001004154,uc012hqx.1_5end | ||
|cluster_id=chrX:149574484..149574554,+ | |||
|description=CAGE_peak_1_at_Rragb_5end | |description=CAGE_peak_1_at_Rragb_5end | ||
|id=chrX:149574484..149574554,+ | |id=chrX:149574484..149574554,+ | ||
|ontology_enrichment_celltype=CL:0000540!4.46e-17!33;CL:0000047!4.46e-17!33;CL:0000031!4.46e-17!33;CL:0000404!4.46e-17!33;CL:0000393!3.66e-15!39;CL:0000211!3.66e-15!39;CL:0000117!2.44e-13!23;CL:0000337!2.44e-13!23;CL:0000221!3.02e-13!44;CL:0000133!3.02e-13!44;CL:0002319!6.00e-13!43;CL:0000055!4.54e-11!50 | |ontology_enrichment_celltype=CL:0000540!4.46e-17!33;CL:0000047!4.46e-17!33;CL:0000031!4.46e-17!33;CL:0000404!4.46e-17!33;CL:0000393!3.66e-15!39;CL:0000211!3.66e-15!39;CL:0000117!2.44e-13!23;CL:0000337!2.44e-13!23;CL:0000221!3.02e-13!44;CL:0000133!3.02e-13!44;CL:0002319!6.00e-13!43;CL:0000055!4.54e-11!50 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.30e-17,33;CL:0000047,1.30e-17,33;CL:0000031,1.30e-17,33;CL:0000404,1.30e-17,33;CL:0000393,1.57e-15,39;CL:0000211,1.57e-15,39;CL:0000117,9.60e-14,23;CL:0000337,9.60e-14,23;CL:0000221,3.52e-13,44;CL:0000133,3.52e-13,44;CL:0002319,7.15e-13,43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.92e-33!73;UBERON:0005743!1.92e-33!73;UBERON:0000073!8.72e-32!75;UBERON:0001016!8.72e-32!75;UBERON:0002346!1.31e-28!71;UBERON:0003075!1.31e-28!71;UBERON:0007284!1.31e-28!71;UBERON:0000033!1.18e-26!63;UBERON:0001049!8.29e-26!52;UBERON:0005068!8.29e-26!52;UBERON:0006241!8.29e-26!52;UBERON:0007135!8.29e-26!52;UBERON:0004121!1.03e-25!102;UBERON:0000924!1.03e-25!102;UBERON:0006601!1.03e-25!102;UBERON:0000955!1.81e-24!50;UBERON:0006238!1.81e-24!50;UBERON:0002616!6.67e-24!49;UBERON:0003056!3.67e-23!49;UBERON:0003080!2.56e-20!40;UBERON:0002780!1.31e-19!39;UBERON:0001890!1.31e-19!39;UBERON:0006240!1.31e-19!39;UBERON:0002020!3.33e-18!34;UBERON:0002791!5.54e-15!29;UBERON:0003528!5.54e-15!29;UBERON:0001893!5.54e-15!29;UBERON:0000153!1.37e-13!94;UBERON:0007811!1.74e-13!86;UBERON:0000956!2.13e-10!21;UBERON:0001869!2.13e-10!21;UBERON:0000203!2.13e-10!21;UBERON:0002619!6.10e-09!17;UBERON:0002021!3.95e-07!10;UBERON:0000411!3.95e-07!10;UBERON:0001950!3.95e-07!10 | |ontology_enrichment_uberon=UBERON:0001017!1.92e-33!73;UBERON:0005743!1.92e-33!73;UBERON:0000073!8.72e-32!75;UBERON:0001016!8.72e-32!75;UBERON:0002346!1.31e-28!71;UBERON:0003075!1.31e-28!71;UBERON:0007284!1.31e-28!71;UBERON:0000033!1.18e-26!63;UBERON:0001049!8.29e-26!52;UBERON:0005068!8.29e-26!52;UBERON:0006241!8.29e-26!52;UBERON:0007135!8.29e-26!52;UBERON:0004121!1.03e-25!102;UBERON:0000924!1.03e-25!102;UBERON:0006601!1.03e-25!102;UBERON:0000955!1.81e-24!50;UBERON:0006238!1.81e-24!50;UBERON:0002616!6.67e-24!49;UBERON:0003056!3.67e-23!49;UBERON:0003080!2.56e-20!40;UBERON:0002780!1.31e-19!39;UBERON:0001890!1.31e-19!39;UBERON:0006240!1.31e-19!39;UBERON:0002020!3.33e-18!34;UBERON:0002791!5.54e-15!29;UBERON:0003528!5.54e-15!29;UBERON:0001893!5.54e-15!29;UBERON:0000153!1.37e-13!94;UBERON:0007811!1.74e-13!86;UBERON:0000956!2.13e-10!21;UBERON:0001869!2.13e-10!21;UBERON:0000203!2.13e-10!21;UBERON:0002619!6.10e-09!17;UBERON:0002021!3.95e-07!10;UBERON:0000411!3.95e-07!10;UBERON:0001950!3.95e-07!10 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.80e-34,73;UBERON:0001016,3.18e-32,75;UBERON:0002346,1.14e-31,64;UBERON:0003075,1.14e-31,64;UBERON:0007284,1.14e-31,64;UBERON:0000073,1.48e-28,54;UBERON:0004121,1.33e-27,95;UBERON:0000924,1.33e-27,95;UBERON:0006601,1.33e-27,95;UBERON:0001049,6.69e-27,52;UBERON:0005068,6.69e-27,52;UBERON:0006241,6.69e-27,52;UBERON:0007135,6.69e-27,52;UBERON:0010314,2.06e-25,92;UBERON:0010371,4.87e-25,73;UBERON:0003056,6.59e-24,49;UBERON:0000955,3.35e-23,47;UBERON:0006238,3.35e-23,47;UBERON:0002616,1.26e-22,46;UBERON:0003080,5.76e-21,40;UBERON:0002780,3.11e-20,39;UBERON:0001890,3.11e-20,39;UBERON:0006240,3.11e-20,39;UBERON:0002020,8.88e-19,34;UBERON:0003528,1.91e-15,29;UBERON:0002791,1.91e-15,29;UBERON:0001893,1.91e-15,29;UBERON:0000956,1.06e-10,21;UBERON:0001869,1.06e-10,21;UBERON:0000203,1.06e-10,21;UBERON:0002619,3.39e-09,17;UBERON:0002021,2.53e-07,10;UBERON:0000411,2.53e-07,10;UBERON:0001950,2.53e-07,10 | |||
|phase1_expression=8.48788889655408,0,0,0,0,0.16787927191189,0.467225281191051,0.903863264091034,0.703943610758334,0.468129052643987,3.4243593645101,5.10541817570153,1.54080656938085,1.31130603628496,0.999329285446988,1.01237633694913,0.699561878128147,1.57731082679119,2.4680598049033,1.27316895539409,10.8004978491859,1.19149141441062,0.783599367416806,0.159992422793407,0,0,0,0,0.190023419456374,0,0.665191531965914,5.08024538767705,6.76571266343027,0,0,0.332469290716985,0,0,0,0,0,0,0,9.56815816614387,7.29913904780505,3.48738829107195,0,5.66865406589161,1.97717564461025,6.02732687130279,3.3596741190087,1.43752564364972,1.67782606057736,0.725362142011344,1.00828139742739,0.257259436035947,0.573066879877513,2.06268836910977,18.613114399083,19.5726662330652,15.2119536841483,0,0,0,0,0,0.898800331555214,3.07374644257244,10.2652716185393,9.04539786822327,8.62332341540666,45.9898084890124,43.0693654855646,16.4137670948038,13.0349840584801,10.1114066527102,72.6764814595965,50.5641858817343,51.9190082406103,22.0250100509424,24.6101761290482,24.4829284161677,52.4864038122596,49.5231096827878,56.3825534296429,49.4976023595762,56.2368139156457,35.975093044283,0.681535739998656,0.906858721281426,0.289864488701678,0,0,0.539703191637817,0,0.448026887097336,2.38755514223978,4.09032774187339,3.11743205523443,3.88673531961374,7.46470124816407,0,0,0,0.216491041011214,0,0.505524445014783,1.37020655662872,3.36619248741323,5.64080128446334,0.867426633830679,3.04465478312141,1.84492397804847,2.11011696773672,3.05730638552832,2.76466500925286,0.247194967734374,2.74738778147832,0.884610551949874,1.7794353494215,0.662524555381181,0.484875253135222,0,22.2513405728776,24.0863712835473,0.510914110417183,0.599075622529601,1.19980546198682,0.635351135365324,51.527979955259,30.652540388848,31.2879336761032,31.9836749153789,39.1244649715406,38.6485762880782,49.9703090248694,2.34230536855727,2.23932547098167,6.57079171927554,6.94458124425364,7.1566243629487,5.51765050640335,6.30217454318722,6.78171680260718,11.0899493616664,8.71173297936978,10.4945931506896,12.6764651662118,5.38919982332106,6.05139456537022,5.80638709741031,3.06874025398605,3.61461423993277,1.0447564995665,0.61734640922383,2.7864797354589,0,0.51469581422943,1.13665399758237,2.89976081549703,2.57978665979206,3.78130329068131,4.49814997611899,4.32881309844288,2.93107514486019,2.32533944750408,4.02410102099429,1.98501082024188,3.45575684818309,1.47750717671186,1.13496333364198,1.60819986167866,1.3173006917463,1.34206418760372,41.0065399700048,21.9186824367876,0,0,4.69234151177515,2.78684006232526,1.54640953586512,1.61346819698674,1.11189021922435,1.14135375667535,0,1.15289268306808,1.50801125280162,2.38747766449381,1.36474860983384,0.898819408654221,0.432276099749388,0.796565093017469,1.89667900953082,2.74196430263349,2.25415471346161,4.2766778847516,2.90928730751439,3.22624771495465,2.33975187359752,3.39503340353085,2.19798218977925,2.71473760627961,0.296452627087149,0.667380422864376,0.786235980452812,0.449724224769707,0.811440485554012,0.72353147925725,0.25462585178142,0,0.648540907100142,0.549122826376163,0,1.11642284300551,1.87222603868736,0.252578877947112,0.358794827043824,1.4473305640901,2.03228509183265,2.4633883530163,1.14075483509418,1.52770577197669,1.17345124144251,0.335012514883631,0.238043640886014,0.195133647857799,0.945810864637146,0.8858587585951,0.956728611944923,0.983179888294428,1.03610989119537,0.723245292907558,0,1.08781136763742,0.491764273019036,0,57.4771112156295,59.0746900424704,0,1.76729649043061,11.042787679569,12.4940398174924,12.9254038639679,13.860190281248,9.35754431146055,9.6246020468203,13.3587531552715,11.3979784585412,8.30104333687699,23.7777774152137,1.41940085208269,1.78065603667255,0.977321756121456,2.8044920905331,0,4.85561272309963,4.23252979750651,2.07465587731488,2.06711325016541,2.76691633149535,3.10113951801865,3.27180356529755,3.92147116223193,2.21225730555071,2.10837217149998,1.03135543248187,13.6175842301515,11.8840322060665,9.83125996748934,14.3605813471167,16.4926417287314,11.9507107793387,9.21474515371877,10.656273219011,0.704015124191131,0.21183207086382,0.882113592219848,0.32977250588296,0,0.180938774784468,0.119372344003136,0.164140899745061,0.582961673259701,43.5749459724698,1.19609616558497,1.23832120777933,0.925972636848558,1.31857919903284,1.36694227721025,1.37266903923914,1.69978429993855,1.81936888020755,0.552799895217695,1.90934123603023,4.74503990371703,3.45643094115643,2.70013352054503,2.50905955217362,1.09181281873089,0.809186078308924,2.39695021603474,1.30877970992015,0.648074866458964,0,4.50954350947352,3.58839710505549,2.48187735685646,2.72231663681667,3.48731523389874,4.22390313726945,3.87278887530988,7.55185432094911,10.2762157537197,6.03960302065015,4.60848010012585,1.58005560314089,0.810900861160657,0.616265742988964,1.03936658382236,1.43221356533985,0.596044064343795,0.721172697119813,0.147689527174577,0.807731599585181,0.457240839929999,0.201652370273681,0.38983152295901,0.577271049841977,0.93501521745255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| ||
|short_description=p1@Rragb | |short_description=p1@Rragb | ||
}} | }} |
Latest revision as of 16:58, 1 October 2015
Short description: | p1@Rragb |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rragb_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000039720, ENSMUST00000144175, NM_001004154, uc012hqx.1_5end |
EntrezGene: | Rragb |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.30e-17 | 33 |
neuronal stem cell | 1.30e-17 | 33 |
neuroblast | 1.30e-17 | 33 |
electrically signaling cell | 1.30e-17 | 33 |
electrically responsive cell | 1.57e-15 | 39 |
electrically active cell | 1.57e-15 | 39 |
CNS neuron (sensu Vertebrata) | 9.60e-14 | 23 |
neuroblast (sensu Vertebrata) | 9.60e-14 | 23 |
ectodermal cell | 3.52e-13 | 44 |
neurectodermal cell | 3.52e-13 | 44 |
neural cell | 7.15e-13 | 43 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.80e-34 | 73 |
nervous system | 3.18e-32 | 75 |
neurectoderm | 1.14e-31 | 64 |
neural plate | 1.14e-31 | 64 |
presumptive neural plate | 1.14e-31 | 64 |
regional part of nervous system | 1.48e-28 | 54 |
ectoderm-derived structure | 1.33e-27 | 95 |
ectoderm | 1.33e-27 | 95 |
presumptive ectoderm | 1.33e-27 | 95 |
neural tube | 6.69e-27 | 52 |
neural rod | 6.69e-27 | 52 |
future spinal cord | 6.69e-27 | 52 |
neural keel | 6.69e-27 | 52 |
structure with developmental contribution from neural crest | 2.06e-25 | 92 |
ecto-epithelium | 4.87e-25 | 73 |
pre-chordal neural plate | 6.59e-24 | 49 |
brain | 3.35e-23 | 47 |
future brain | 3.35e-23 | 47 |
regional part of brain | 1.26e-22 | 46 |
anterior neural tube | 5.76e-21 | 40 |
regional part of forebrain | 3.11e-20 | 39 |
forebrain | 3.11e-20 | 39 |
future forebrain | 3.11e-20 | 39 |
gray matter | 8.88e-19 | 34 |
brain grey matter | 1.91e-15 | 29 |
regional part of telencephalon | 1.91e-15 | 29 |
telencephalon | 1.91e-15 | 29 |
cerebral cortex | 1.06e-10 | 21 |
cerebral hemisphere | 1.06e-10 | 21 |
pallium | 1.06e-10 | 21 |
regional part of cerebral cortex | 3.39e-09 | 17 |
occipital lobe | 2.53e-07 | 10 |
visual cortex | 2.53e-07 | 10 |
neocortex | 2.53e-07 | 10 |