FF:11283-116I5: Difference between revisions

Revision as of 15:00, 15 May 2017

Name:	Smooth Muscle Cells - Aortic, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11085
Sample type:	primary cells
Genomic View:	UCSC
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13
CAGEd-oPOSSUM:	link

Additional information

Sample information

strain	NA
tissue	aorta
dev stage	39 years old adult
sex	male
age	39
cell type	smooth muscle cell
cell line	NA
company	Cell Applications
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	1401(1)
catalog number	CA354-R10a
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005435

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11085		CAGE		DRX008468		DRR009340

Accession ID Hg19

Library id		BAM		CTSS
CNhs11085		DRZ000765		DRZ002150

Download raw sequence, BAM & CTSS

Hg19

BAM	CTSS
[{{{hg19bam}}} download]	[{{{hg19ctss}}} donwload]

Hg38

BAM	CTSS
[{{{hg38bam}}} download]	[{{{hg38ctss}}} donwload]

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0528
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.145
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.114
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.0976
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.168
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.368
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.113
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.284
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.343
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0.845
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.422
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.195
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.0958
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0411
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.405
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.284
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.284
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.836
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.405
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.284
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11085

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.929
MA0003.1	MA0003.1	0.455
MA0004.1	MA0004.1	0.721
MA0006.1	MA0006.1	0.157
MA0007.1	MA0007.1	0.475
MA0009.1	MA0009.1	0.78
MA0014.1	MA0014.1	0.182
MA0017.1	MA0017.1	0.894
MA0018.2	MA0018.2	0.00199
MA0019.1	MA0019.1	0.338
MA0024.1	MA0024.1	1.22947e-5
MA0025.1	MA0025.1	0.196
MA0027.1	MA0027.1	0.999
MA0028.1	MA0028.1	0.00291
MA0029.1	MA0029.1	0.434
MA0030.1	MA0030.1	0.547
MA0031.1	MA0031.1	0.315
MA0035.2	MA0035.2	0.976
MA0038.1	MA0038.1	0.764
MA0039.2	MA0039.2	0.114
MA0040.1	MA0040.1	0.956
MA0041.1	MA0041.1	0.21
MA0042.1	MA0042.1	0.384
MA0043.1	MA0043.1	0.00335
MA0046.1	MA0046.1	0.986
MA0047.2	MA0047.2	0.74
MA0048.1	MA0048.1	0.519
MA0050.1	MA0050.1	5.41115e-21
MA0051.1	MA0051.1	1.122e-15
MA0052.1	MA0052.1	0.869
MA0055.1	MA0055.1	0.965
MA0057.1	MA0057.1	0.727
MA0058.1	MA0058.1	0.606
MA0059.1	MA0059.1	0.539
MA0060.1	MA0060.1	0.073
MA0061.1	MA0061.1	0.146
MA0062.2	MA0062.2	9.46867e-6
MA0065.2	MA0065.2	0.737
MA0066.1	MA0066.1	0.753
MA0067.1	MA0067.1	0.00469
MA0068.1	MA0068.1	0.213
MA0069.1	MA0069.1	0.645
MA0070.1	MA0070.1	0.848
MA0071.1	MA0071.1	0.4
MA0072.1	MA0072.1	0.759
MA0073.1	MA0073.1	0.778
MA0074.1	MA0074.1	0.192
MA0076.1	MA0076.1	0.00174
MA0077.1	MA0077.1	0.273
MA0078.1	MA0078.1	0.142
MA0079.2	MA0079.2	0.879
MA0080.2	MA0080.2	0.00563
MA0081.1	MA0081.1	0.0502
MA0083.1	MA0083.1	0.0242
MA0084.1	MA0084.1	0.28
MA0087.1	MA0087.1	0.365
MA0088.1	MA0088.1	0.574
MA0090.1	MA0090.1	0.00339
MA0091.1	MA0091.1	0.328
MA0092.1	MA0092.1	0.188
MA0093.1	MA0093.1	0.751
MA0099.2	MA0099.2	9.89241e-11
MA0100.1	MA0100.1	0.0782
MA0101.1	MA0101.1	0.124
MA0102.2	MA0102.2	0.618
MA0103.1	MA0103.1	0.0298
MA0104.2	MA0104.2	0.366
MA0105.1	MA0105.1	0.298
MA0106.1	MA0106.1	0.205
MA0107.1	MA0107.1	0.0147
MA0108.2	MA0108.2	7.98466e-8
MA0111.1	MA0111.1	0.0135
MA0112.2	MA0112.2	0.0794
MA0113.1	MA0113.1	0.384
MA0114.1	MA0114.1	0.835
MA0115.1	MA0115.1	0.97
MA0116.1	MA0116.1	0.578
MA0117.1	MA0117.1	0.307
MA0119.1	MA0119.1	0.0391
MA0122.1	MA0122.1	0.801
MA0124.1	MA0124.1	0.319
MA0125.1	MA0125.1	0.883
MA0131.1	MA0131.1	0.325
MA0135.1	MA0135.1	0.936
MA0136.1	MA0136.1	0.0209
MA0137.2	MA0137.2	0.955
MA0138.2	MA0138.2	0.295
MA0139.1	MA0139.1	0.507
MA0140.1	MA0140.1	0.684
MA0141.1	MA0141.1	0.726
MA0142.1	MA0142.1	0.767
MA0143.1	MA0143.1	0.452
MA0144.1	MA0144.1	0.415
MA0145.1	MA0145.1	0.146
MA0146.1	MA0146.1	0.779
MA0147.1	MA0147.1	0.611
MA0148.1	MA0148.1	0.427
MA0149.1	MA0149.1	0.332
MA0150.1	MA0150.1	0.149
MA0152.1	MA0152.1	0.229
MA0153.1	MA0153.1	0.865
MA0154.1	MA0154.1	0.21
MA0155.1	MA0155.1	0.0284
MA0156.1	MA0156.1	0.211
MA0157.1	MA0157.1	0.877
MA0159.1	MA0159.1	0.871
MA0160.1	MA0160.1	0.712
MA0162.1	MA0162.1	0.147
MA0163.1	MA0163.1	0.284
MA0164.1	MA0164.1	0.413
MA0258.1	MA0258.1	0.177
MA0259.1	MA0259.1	0.253

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11085

Novel motif	Logo	P-value
1	1	0.4
10	10	0.0997
100	100	0.487
101	101	0.594
102	102	0.691
103	103	0.673
104	104	0.146
105	105	0.929
106	106	0.0343
107	107	0.00597
108	108	0.206
109	109	0.605
11	11	0.533
110	110	0.339
111	111	0.223
112	112	0.69
113	113	0.166
114	114	0.493
115	115	0.602
116	116	0.113
117	117	0.873
118	118	0.721
119	119	0.754
12	12	0.81
120	120	0.309
121	121	0.245
122	122	0.932
123	123	0.00896
124	124	0.669
125	125	0.902
126	126	0.421
127	127	0.619
128	128	0.175
129	129	0.497
13	13	0.736
130	130	0.191
131	131	0.576
132	132	0.483
133	133	0.818
134	134	0.967
135	135	0.32
136	136	0.135
137	137	0.819
138	138	0.908
139	139	0.684
14	14	0.924
140	140	0.764
141	141	0.0422
142	142	0.639
143	143	0.198
144	144	0.418
145	145	0.507
146	146	0.0673
147	147	0.0182
148	148	0.572
149	149	0.256
15	15	0.878
150	150	0.101
151	151	0.362
152	152	0.0378
153	153	0.195
154	154	0.702
155	155	0.016
156	156	0.592
157	157	0.121
158	158	0.0324
159	159	0.407
16	16	0.141
160	160	0.239
161	161	0.786
162	162	0.235
163	163	0.762
164	164	0.934
165	165	0.331
166	166	0.0363
167	167	0.225
168	168	0.963
169	169	0.0951
17	17	0.295
18	18	0.0672
19	19	0.128
2	2	0.336
20	20	0.405
21	21	0.336
22	22	0.4
23	23	0.329
24	24	0.221
25	25	0.0539
26	26	0.364
27	27	0.824
28	28	0.136
29	29	0.989
3	3	0.614
30	30	0.415
31	31	0.526
32	32	8.92011e-6
33	33	0.972
34	34	0.271
35	35	0.649
36	36	0.327
37	37	0.39
38	38	0.961
39	39	0.14
4	4	0.667
40	40	0.145
41	41	0.86
42	42	0.961
43	43	0.243
44	44	0.686
45	45	0.169
46	46	0.456
47	47	0.831
48	48	0.808
49	49	0.919
5	5	0.942
50	50	0.51
51	51	0.671
52	52	0.692
53	53	0.268
54	54	0.565
55	55	0.24
56	56	0.434
57	57	0.858
58	58	0.334
59	59	0.194
6	6	0.25
60	60	0.568
61	61	0.424
62	62	0.536
63	63	0.401
64	64	0.855
65	65	0.252
66	66	0.849
67	67	0.857
68	68	0.24
69	69	0.405
7	7	0.263
70	70	0.463
71	71	0.885
72	72	0.229
73	73	0.0633
74	74	0.972
75	75	0.594
76	76	0.593
77	77	0.023
78	78	0.425
79	79	0.199
8	8	0.433
80	80	0.512
81	81	0.891
82	82	0.441
83	83	0.434
84	84	0.648
85	85	0.0748
86	86	0.655
87	87	0.0697
88	88	0.107
89	89	0.126
9	9	0.161
90	90	0.613
91	91	0.694
92	92	0.659
93	93	0.815
94	94	0.715
95	95	0.527
96	96	0.896
97	97	0.135
98	98	0.36
99	99	0.018

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11085

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000168 human aortic smooth muscle cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002539 (aortic smooth muscle cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001135 (smooth muscle tissue)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0002385 (muscle tissue)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0004237 (blood vessel smooth muscle)
0004695 (arterial system smooth muscle)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0002111 (artery smooth muscle tissue)
0007798 (vascular system)
0001015 (musculature)
0004178 (aorta smooth muscle tissue)
0002204 (musculoskeletal system)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0000383 (musculature of body)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000168 (human aortic smooth muscle cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

@@ Line 13: / Line 13: @@
 |def=
 |expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.09!121.37!TCF21;;chr8:55370487..55370503,+!p1@SOX17!1.95!87.79!SOX17;;chr1:170633348..170633399,+!p2@PRRX1!1.71!67.46!PRRX1;;chr4:174451370..174451387,-!p1@HAND2!1.66!44.36!HAND2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.53!33.27!HOXC5;;chr11:64764435..64764449,-!p1@BATF2!1.52!43.74!BATF2;;chr8:11561684..11561751,+!p1@GATA4!1.40!24.03!GATA4;;chr18:19749386..19749404,+!p2@GATA6!1.38!32.34!GATA6;;chr11:46299199..46299233,+!p1@CREB3L1!1.37!113.66!CREB3L1;;chr9:132427972..132428056,+!p1@PRRX2!1.34!27.11!PRRX2;;chr18:19749541..19749557,+!p1@GATA6!1.32!60.68!GATA6;;chr16:86600426..86600441,+!p1@FOXC2!1.30!46.51!FOXC2;;chr1:170633262..170633285,+!p3@PRRX1!1.30!21.87!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!1.23!16.02!PRRX1;;chr10:94449703..94449718,+!p1@HHEX!1.22!59.14!HHEX;;chr19:13134772..13134822,+!p2@NFIX!1.21!22.18!NFIX;;chr4:174450089..174450153,-!p2@HAND2!1.19!14.48!HAND2;;chr20:6748325..6748352,+!p1@BMP2!1.17!19.71!BMP2;;chr11:46299539..46299620,+!p2@CREB3L1!1.15!22.18!CREB3L1;;chr2:231084639..231084654,-!p2@SP110!1.13!20.64!SP110;;chr1:170632285..170632309,+!p1@PRRX1!1.13!14.17!PRRX1;;chr7:19157248..19157268,-!p1@TWIST1!1.12!33.58!TWIST1;;chr11:615570..615721,-!p2@IRF7!1.12!24.03!IRF7;;chr8:72756063..72756125,-!p1@MSC!1.09!22.79!MSC;;chr8:106330656..106330684,+!p1@ZFPM2!1.08!29.26!ZFPM2;;chr18:77155922..77155939,+!p1@NFATC1!1.06!28.65!NFATC1;;chr8:22550982..22550999,-!p1@EGR3!1.04!28.34!EGR3;;chr11:615942..615957,-!p1@IRF7!1.02!90.87!IRF7;;chr1:170632115..170632136,+!p9@PRRX1!1.02!9.55!PRRX1;;chr7:27205136..27205164,-!p1@HOXA9!1.02!9.55!HOXA9;;chr17:38256822..38256851,-!p1@NR1D1!1.00!72.70!NR1D1;;chr3:25470156..25470227,+!p2@RARB!1.00!8.93!RARB;;chr6:34204921..34204939,+!p3@HMGA1!0.99!271.38!HMGA1;;chr20:42543441..42543497,+!p1@TOX2!0.99!40.04!TOX2;;chr11:65667884..65667895,-!p2@FOSL1!0.99!34.81!FOSL1;;chr15:83953397..83953425,-!p1@BNC1!0.99!10.17!BNC1;;chr17:46622070..46622109,-!p1@HOXB2!0.98!19.41!HOXB2;;chr17:46655704..46655718,-!p2@HOXB4!0.98!12.94!HOXB4;;chr18:19749353..19749367,+!p4@GATA6!0.98!8.62!GATA6;;chr2:191878812..191878823,-!p2@STAT1!0.96!10.47!STAT1;;chr12:124873357..124873401,-!p1@NCOR2!0.95!94.87!NCOR2;;chr2:239756671..239756732,+!p1@TWIST2!0.95!26.49!TWIST2;;chr4:174451350..174451363,-!p3@HAND2!0.95!8.01!HAND2;;chr11:34642612..34642646,+!p1@EHF!0.95!8.01!EHF;;chr8:106330696..106330719,+!p2@ZFPM2!0.94!9.86!ZFPM2;;chr2:113993052..113993097,-!p2@PAX8!0.93!17.25!PAX8;;chr2:19558373..19558392,-!p1@OSR1!0.91!20.02!OSR1;;chr11:65686802..65686818,+!p6@DRAP1!0.91!12.63!DRAP1;;chr7:35293685..35293718,-!p1@TBX20!0.91!7.08!TBX20;;chr17:1958388..1958404,+!p1@HIC1!0.90!45.90!HIC1;;chr12:66218598..66218645,+!p2@HMGA2!0.90!33.58!HMGA2;;chr6:126240380..126240430,+!p2@NCOA7!0.90!18.79!NCOA7;;chr2:239756739..239756755,+!p2@TWIST2!0.90!12.32!TWIST2;;chr14:24630902..24630948,+!p2@IRF9!0.89!8.32!IRF9;;chr2:66662510..66662521,+!p6@MEIS1!0.89!6.78!MEIS1;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.87!68.08!GLIS2;;chr17:1959369..1959388,+!p2@HIC1!0.87!17.87!HIC1;;chr5:158526459..158526481,-!p2@EBF1!0.87!8.62!EBF1;;chr7:1577899..1577943,+!p3@MAFK!0.87!6.47!MAFK;;chr17:48072574..48072597,-!p1@DLX3!0.87!6.47!DLX3;;chr12:54422217..54422239,+!p3@HOXC6!0.87!6.47!HOXC6;;chr19:16435625..16435682,+!p1@KLF2!0.86!213.78!KLF2;;chr5:92918919..92918942,+!p1@NR2F1!0.86!29.26!NR2F1;;chr8:77593474..77593612,+!p1@ZFHX4!0.85!27.41!ZFHX4;;chr1:170632959..170632987,+!p4@PRRX1!0.85!6.78!PRRX1;;chr1:170632051..170632081,+!p16@PRRX1!0.85!6.16!PRRX1;;chr9:16705069..16705086,-!p3@BNC2!0.85!6.16!BNC2;;chr11:64764402..64764413,-!p2@BATF2!0.85!6.16!BATF2;;chr12:54393880..54393962,+!p1@HOXC9!0.85!6.16!HOXC9;;chr19:42636586..42636607,-!p1@POU2F2!0.84!17.25!POU2F2;;chr19:13136130..13136165,+!p6@NFIX!0.84!8.01!NFIX;;chr18:53068911..53068935,-!p4@TCF4!0.84!6.78!TCF4;;chr3:25469815..25469866,+!p3@RARB!0.84!5.85!RARB;;chr10:8095593..8095625,+!p3@GATA3!0.83!6.78!GATA3;;chr15:67418119..67418162,+!p5@SMAD3!0.83!6.47!SMAD3;;chr16:4366021..4366045,+!p@chr16:4366021..4366045,+!0.82!28.65!GLIS2;;chr17:46622114..46622138,-!p4@HOXB2!0.82!8.93!HOXB2;;chr17:6926362..6926377,+!p1@BCL6B!0.82!5.54!BCL6B;;chr1:37940170..37940190,+!p1@ZC3H12A!0.81!73.00!ZC3H12A;;chr12:53614115..53614154,-!p1@RARG!0.81!31.42!RARG;;chr11:65687362..65687436,+!p3@DRAP1!0.81!26.49!DRAP1;;chr12:66218255..66218304,+!p3@HMGA2!0.81!15.40!HMGA2;;chr2:145277882..145277967,-!p3@ZEB2!0.81!9.86!ZEB2;;chr17:46622205..46622218,-!p3@HOXB2!0.81!6.47!HOXB2;;chr17:46622440..46622477,-!p5@HOXB2!0.81!6.16!HOXB2;;chr10:8096631..8096660,+!p1@GATA3!0.80!6.47!GATA3;;chr19:13106214..13106382,+!p1@NFIX!0.79!129.37!NFIX;;chr7:14029283..14029311,-!p1@ETV1!0.79!29.57!ETV1;;chr12:54402745..54402788,+!p1@HOXC8!0.79!5.24!HOXC8;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.79!5.24!HOXC5;;chrY:21906594..21906622,-!p1@KDM5D!0.79!5.24!KDM5D;;chr2:66662249..66662267,+!p2@MEIS1!0.78!20.95!MEIS1;;chr2:66662281..66662308,+!p1@MEIS1!0.78!18.79!MEIS1;;chr10:94449675..94449694,+!p2@HHEX!0.78!14.48!HHEX;;chr15:67418047..67418093,+!p4@SMAD3!0.78!6.47!SMAD3;;chr19:45251943..45252006,+!p1@BCL3!0.77!140.46!BCL3;;chr20:42543506..42543549,+!p2@TOX2!0.77!12.63!TOX2;;chr1:170632477..170632506,+!p6@PRRX1!0.77!4.93!PRRX1;;chr19:49865646..49865718,-!p1@TEAD2!0.76!44.66!TEAD2;;chr15:96874927..96874938,+!p8@NR2F2!0.76!10.78!NR2F2;;chr11:65686732..65686756,+!p2@DRAP1!0.75!21.56!DRAP1;;chr7:19157043..19157088,-!p2@TWIST1!0.75!12.63!TWIST1;;chr18:19749517..19749531,+!p3@GATA6!0.75!8.62!GATA6;;chr11:65687222..65687240,+!p7@DRAP1!0.75!6.16!DRAP1;;chr14:29236269..29236285,+!p3@FOXG1!0.75!4.62!FOXG1;;chr15:67458491..67458505,+!p18@SMAD3!0.75!4.62!SMAD3;;chr11:65667846..65667868,-!p1@FOSL1!0.74!131.22!FOSL1;;chr7:139762641..139762768,-!p1@PARP12!0.74!69.00!PARP12;;chr7:26191809..26191890,+!p1@NFE2L3!0.73!23.72!NFE2L3;;chr11:65430554..65430579,-!p3@RELA!0.73!12.01!RELA;;chr17:46655730..46655791,-!p1@HOXB4!0.73!11.71!HOXB4;;chr17:46622229..46622257,-!p6@HOXB2!0.73!5.24!HOXB2;;chr7:14028488..14028516,-!p2@ETV1!0.73!4.93!ETV1;;chr2:66666432..66666462,+!p7@MEIS1!0.73!4.31!MEIS1;;chr9:132427883..132427951,+!p2@PRRX2!0.73!4.31!PRRX2;;chr19:3366570..3366619,+!p1@NFIC!0.72!154.63!NFIC;;chr12:57504975..57505019,-!p2@STAT6!0.72!19.10!STAT6;;chr3:25469724..25469773,+!p1@RARB!0.72!6.47!RARB;;chr6:126070769..126070801,+!p1@HEY2!0.72!4.93!HEY2;;chr3:52001448..52001478,-!p2@PCBP4!0.71!65.30!PCBP4;;chr1:154975258..154975330,+!p1@ZBTB7B!0.71!16.94!ZBTB7B;;chr12:27485762..27485776,+!p3@ARNTL2!0.71!12.01!ARNTL2;;chr12:124873852..124873881,-!p3@NCOR2!0.70!27.11!NCOR2;;chr17:38465413..38465438,+!p5@RARA!0.70!6.78!RARA;;chr6:36355513..36355578,-!p2@ETV7!0.70!5.24!ETV7;;chr10:8096772..8096787,+!p2@GATA3!0.70!4.93!GATA3;;chr11:65429891..65429915,-!p7@RELA!0.70!4.00!RELA;;chr12:54447637..54447659,+!p4@HOXC4!0.70!4.00!HOXC4;;chr14:29235961..29236008,+!p1@FOXG1!0.70!4.00!FOXG1;;chr15:67418177..67418204,+!p9@SMAD3!0.70!4.00!SMAD3;;chr21:38071430..38071456,+!p1@SIM2!0.70!4.00!SIM2;;chr3:52001426..52001447,-!p3@PCBP4!0.69!12.32!PCBP4;;chr7:44143925..44143970,+!p1@AEBP1!0.68!97.34!AEBP1;;chr5:72744594..72744609,-!p1@FOXD1!0.68!19.71!FOXD1;;chr1:158979792..158979814,+!p2@IFI16!0.67!40.97!IFI16;;chr20:48599506..48599526,+!p1@SNAI1!0.67!27.41!SNAI1;;chr17:41622925..41622976,-!p3@ETV4!0.67!5.85!ETV4;;chr11:65687243..65687276,+!p8@DRAP1!0.67!5.24!DRAP1;;chr12:54447599..54447630,+!p3@HOXC4!0.67!4.62!HOXC4;;chr6:126240356..126240379,+!p7@NCOA7!0.67!4.62!NCOA7;;chr8:22550530..22550609,-!p2@EGR3!0.67!3.70!EGR3;;chr2:102091144..102091183,-!p2@RFX8!0.67!3.70!RFX8;;chr3:25470062..25470084,+!p4@RARB!0.67!3.70!RARB;;chrY:2803415..2803468,+!p1@ZFY!0.67!3.70!ZFY;;chr20:47894569..47894799,-!p1@ZNFX1!0.66!111.51!ZNFX1;;chr12:66218836..66218888,+!p1@HMGA2!0.66!39.12!HMGA2;;chr2:145275162..145275202,-!p2@ZEB2!0.66!24.03!ZEB2;;chr6:1610293..1610310,+!p1@FOXC1!0.66!6.47!FOXC1;;chr12:56753869..56753930,-!p1@STAT2!0.65!180.51!STAT2;;chr4:4861385..4861398,+!p1@MSX1!0.65!11.71!MSX1;;chr12:53625966..53626012,-!p2@RARG!0.65!10.17!RARG;;chr17:38256799..38256815,-!p3@NR1D1!0.65!6.78!NR1D1;;chr2:191878874..191878938,-!p1@STAT1!0.64!216.24!STAT1;;chr2:231084659..231084721,-!p1@SP110!0.64!92.10!SP110;;chr2:28616337..28616355,+!p2@FOSL2!0.64!70.23!FOSL2;;chr2:231280954..231280965,+!p2@SP100!0.64!6.78!SP100;;chr17:46688334..46688385,-!p1@HOXB7!0.64!5.24!HOXB7;;chr6:1389789..1389821,+!p1@FOXF2!0.64!4.93!FOXF2;;chr7:27192185..27192209,-!p1@HOXA3!0.64!3.39!HOXA3;;chr18:45663490..45663528,-!p2@ZBTB7C!0.64!3.39!ZBTB7C;;chr1:170632028..170632043,+!p20@PRRX1!0.64!3.39!PRRX1;;chr9:14314476..14314487,-!p9@NFIB!0.64!3.39!NFIB;;chr1:8938709..8938720,-!p3@ENO1!0.63!186.98!ENO1;;chr11:128563948..128564003,+!p1@FLI1!0.63!46.21!FLI1;;chr19:3359591..3359667,+!p2@NFIC!0.63!44.36!NFIC;;chr3:187463220..187463232,-!p3@BCL6!0.63!11.09!BCL6;;chr12:96588368..96588394,+!p3@ELK3!0.63!9.86!ELK3;;chr6:85474299..85474324,-!p1@TBX18!0.63!6.47!TBX18;;chr3:141087393..141087426,+!p3@ZBTB38!0.62!14.79!ZBTB38;;chr1:221052733..221052749,+!p2@HLX!0.62!4.31!HLX;;chr6:135502501..135502546,+!p1@MYB!0.62!4.00!MYB;;chr19:1863568..1863586,-!p1@KLF16!0.61!122.29!KLF16;;chr9:14314566..14314618,-!p1@NFIB!0.61!44.66!NFIB;;chr12:54772960..54773015,-!p3@ZNF385A!0.61!17.56!ZNF385A;;chr3:114343768..114343822,-!p1@ZBTB20!0.61!15.71!ZBTB20;;chr14:61116183..61116208,-!p1@SIX1!0.61!13.55!SIX1;;chr11:61520075..61520136,+!p1@C11orf9!0.61!7.39!C11orf9;;chr12:53614155..53614187,-!p3@RARG!0.61!6.78!RARG;;chr11:125034605..125034636,+!p2@PKNOX2!0.61!3.08!PKNOX2;;chr11:125034640..125034655,+!p1@PKNOX2!0.61!3.08!PKNOX2;;chr11:46333934..46333963,+!p5@CREB3L1!0.61!3.08!CREB3L1;;chr1:170632137..170632172,+!p10@PRRX1!0.61!3.08!PRRX1;;chr1:170633294..170633303,+!p23@PRRX1!0.61!3.08!PRRX1;;chr2:85981027..85981047,+!p8@ATOH8!0.61!3.08!ATOH8;;chr2:85981969..85982019,+!p6@ATOH8!0.61!3.08!ATOH8;;chr16:51185172..51185197,-!p1@SALL1!0.61!3.08!SALL1;;chr19:13136057..13136085,+!p11@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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002539;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000947;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001135;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004573;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798
 |ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
 |fonse_cell_line=

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FF:11283-116I5: Difference between revisions

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Revision as of 15:00, 15 May 2017

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0