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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005088
|DRA_sample_Accession=CAGE@SAMD00005088
|accession_numbers=CAGE;DRX008696;DRR009568;DRZ000993;DRZ002378
|accession_numbers=CAGE;DRX008696;DRR009568;DRZ000993;DRZ002378;DRZ012343;DRZ013728
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|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
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|microRNAs=
|microRNAs=
|microRNAs_nn=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#cage;sample;10277
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10277
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#cage;sample;10277
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10277
|name=optic nerve, donor1
|name=optic nerve, donor1
|namespace=
|namespace=
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|profile_rnaseq=
|profile_rnaseq=
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|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 101: Line 101:
|top_motifs=SOX5:4.13144263399;XBP1:3.39925162705;FOXP1:3.35703831675;SOX2:3.21708074801;SOX{8,9,10}:2.78492918536;SOX17:2.6415170472;NHLH1,2:2.52816275447;ALX1:2.52325823014;ZFP161:2.33053831227;MED-1{core}:2.29442742394;HIC1:2.20438552043;POU6F1:2.10179868527;NFIX:2.02410277264;MTE{core}:1.90636895714;ATF2:1.86057087796;REST:1.85529823367;EP300:1.84996969601;NKX3-2:1.8188092907;RBPJ:1.75503568712;CUX2:1.75154924392;NANOG:1.71459697365;GATA4:1.57321761671;TFAP2B:1.54045186022;FOXO1,3,4:1.52666501648;PITX1..3:1.52411098805;DBP:1.52383188092;TFAP2{A,C}:1.51569693826;FOX{F1,F2,J1}:1.51042985211;MYFfamily:1.4426149886;BREu{core}:1.440189532;AR:1.43106566501;LMO2:1.42197589907;ZBTB6:1.39902290763;ZNF423:1.37445858437;PAX6:1.3743219776;FOX{D1,D2}:1.36415865776;ZNF384:1.36033041134;HOX{A6,A7,B6,B7}:1.35822194089;JUN:1.3566118354;HOXA9_MEIS1:1.27532052978;PRRX1,2:1.25551791303;SMAD1..7,9:1.24691891658;GTF2I:1.20361817032;NR3C1:1.16587724334;TGIF1:1.1411682337;FOXP3:1.11673050414;HBP1_HMGB_SSRP1_UBTF:1.07142245432;CRX:1.06811120577;MTF1:1.04380395086;SPZ1:1.01756691919;FOXQ1:0.992985386611;MZF1:0.963811068726;MAZ:0.907589284293;LEF1_TCF7_TCF7L1,2:0.874060702781;PATZ1:0.80758664775;BPTF:0.804487314832;MYBL2:0.792269905084;RREB1:0.7497198474;EBF1:0.707960533031;SREBF1,2:0.667536667715;OCT4_SOX2{dimer}:0.65349348434;PAX5:0.626871738594;EGR1..3:0.558927456405;RFX2..5_RFXANK_RFXAP:0.546408719122;MAFB:0.54613892089;GFI1B:0.539468031921;NKX6-1,2:0.53020697864;CREB1:0.520610967834;POU3F1..4:0.517246876791;NKX2-2,8:0.50542659189;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.446678001111;ZBTB16:0.439669924314;RFX1:0.420595462329;TFDP1:0.415702008118;STAT2,4,6:0.310532020872;FOXM1:0.303121645915;NRF1:0.282971882932;ZNF143:0.251312694523;KLF4:0.20955530633;ZIC1..3:0.194281809409;IKZF2:0.18208908923;STAT5{A,B}:0.151473463178;FOXD3:0.148419179436;PAX4:0.139737022263;TLX1..3_NFIC{dimer}:0.131947243611;IRF7:0.106417803942;SP1:0.0869042488164;GZF1:0.0859636867878;RORA:0.0824054713477;TOPORS:0.0779700978945;LHX3,4:0.0773212422058;TBX4,5:0.0757616062024;ZNF238:0.074094665239;ARID5B:0.0685940459879;GCM1,2:0.0425087883358;PRDM1:0.0327407614336;ADNP_IRX_SIX_ZHX:0.00168516431372;HMGA1,2:-0.00945314607689;YY1:-0.033249502505;CDC5L:-0.0394822359827;TFAP4:-0.0399626835382;GTF2A1,2:-0.0426177082178;NR5A1,2:-0.061925513117;HOX{A4,D4}:-0.0800508550272;NKX2-3_NKX2-5:-0.0828609221395;HMX1:-0.121943380433;STAT1,3:-0.128010770578;AHR_ARNT_ARNT2:-0.138141045895;ESRRA:-0.142926275917;FOX{I1,J2}:-0.149100938212;NFIL3:-0.181397184074;RXR{A,B,G}:-0.186084632812;ATF5_CREB3:-0.206661211277;HNF4A_NR2F1,2:-0.236571741397;GATA6:-0.253913083001;NFATC1..3:-0.276810904882;ONECUT1,2:-0.283993233898;TAL1_TCF{3,4,12}:-0.289238696921;PDX1:-0.319099538959;MEF2{A,B,C,D}:-0.338578004674;IRF1,2:-0.346201966395;EVI1:-0.367875033125;HNF1A:-0.395681760686;TFCP2:-0.412028987462;NANOG{mouse}:-0.414998493189;PAX2:-0.452504785688;ZEB1:-0.454813131542;FOXN1:-0.458216680255;PBX1:-0.475746271344;POU5F1:-0.476011909354;HES1:-0.496074394093;IKZF1:-0.506038981138;NKX2-1,4:-0.531847975302;TBP:-0.546145727548;HAND1,2:-0.569039626141;ATF6:-0.569251640316;PAX1,9:-0.574765179058;NFY{A,B,C}:-0.581076803123;NFE2:-0.58440995363;TEAD1:-0.595352073255;ETS1,2:-0.601116706478;CEBPA,B_DDIT3:-0.617312129607;ESR1:-0.621120155099;SRF:-0.658628663542;SPIB:-0.659537719023;XCPE1{core}:-0.660445687648;FOXL1:-0.674840321043;FOSL2:-0.698825098819;TP53:-0.715323056028;NFE2L2:-0.726317582625;FOXA2:-0.730473532194;FOS_FOS{B,L1}_JUN{B,D}:-0.734471318966;HLF:-0.740040932693;NKX3-1:-0.746799839008;ALX4:-0.749303522578;T:-0.755771108223;BACH2:-0.770026302836;CDX1,2,4:-0.779909908293;UFEwm:-0.789249832297;ATF4:-0.790487745377;TEF:-0.795582547086;MYOD1:-0.811292641523;NFE2L1:-0.841191367557;TLX2:-0.876073330309;SPI1:-0.953334248793;RUNX1..3:-0.959683188528;POU1F1:-0.962701789915;POU2F1..3:-0.96644561159;GFI1:-0.97499100086;NFKB1_REL_RELA:-0.992158926087;SNAI1..3:-1.01330586878;HIF1A:-1.02192816242;DMAP1_NCOR{1,2}_SMARC:-1.05946828159;ELF1,2,4:-1.09418563647;PAX8:-1.09648107318;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.10331155255;AIRE:-1.14323762651;MYB:-1.18928851903;E2F1..5:-1.20703829632;VSX1,2:-1.23028327382;NR6A1:-1.33321544889;ELK1,4_GABP{A,B1}:-1.35680960174;bHLH_family:-1.44710578243;GLI1..3:-1.50337522868;PAX3,7:-1.56858768556;ZNF148:-1.60962899358;NR1H4:-1.70579982267;RXRA_VDR{dimer}:-1.76205880984;HSF1,2:-1.9966143511;EN1,2:-2.07372290766;HOX{A5,B5}:-2.09022899375;PPARG:-2.91062579172
|top_motifs=SOX5:4.13144263399;XBP1:3.39925162705;FOXP1:3.35703831675;SOX2:3.21708074801;SOX{8,9,10}:2.78492918536;SOX17:2.6415170472;NHLH1,2:2.52816275447;ALX1:2.52325823014;ZFP161:2.33053831227;MED-1{core}:2.29442742394;HIC1:2.20438552043;POU6F1:2.10179868527;NFIX:2.02410277264;MTE{core}:1.90636895714;ATF2:1.86057087796;REST:1.85529823367;EP300:1.84996969601;NKX3-2:1.8188092907;RBPJ:1.75503568712;CUX2:1.75154924392;NANOG:1.71459697365;GATA4:1.57321761671;TFAP2B:1.54045186022;FOXO1,3,4:1.52666501648;PITX1..3:1.52411098805;DBP:1.52383188092;TFAP2{A,C}:1.51569693826;FOX{F1,F2,J1}:1.51042985211;MYFfamily:1.4426149886;BREu{core}:1.440189532;AR:1.43106566501;LMO2:1.42197589907;ZBTB6:1.39902290763;ZNF423:1.37445858437;PAX6:1.3743219776;FOX{D1,D2}:1.36415865776;ZNF384:1.36033041134;HOX{A6,A7,B6,B7}:1.35822194089;JUN:1.3566118354;HOXA9_MEIS1:1.27532052978;PRRX1,2:1.25551791303;SMAD1..7,9:1.24691891658;GTF2I:1.20361817032;NR3C1:1.16587724334;TGIF1:1.1411682337;FOXP3:1.11673050414;HBP1_HMGB_SSRP1_UBTF:1.07142245432;CRX:1.06811120577;MTF1:1.04380395086;SPZ1:1.01756691919;FOXQ1:0.992985386611;MZF1:0.963811068726;MAZ:0.907589284293;LEF1_TCF7_TCF7L1,2:0.874060702781;PATZ1:0.80758664775;BPTF:0.804487314832;MYBL2:0.792269905084;RREB1:0.7497198474;EBF1:0.707960533031;SREBF1,2:0.667536667715;OCT4_SOX2{dimer}:0.65349348434;PAX5:0.626871738594;EGR1..3:0.558927456405;RFX2..5_RFXANK_RFXAP:0.546408719122;MAFB:0.54613892089;GFI1B:0.539468031921;NKX6-1,2:0.53020697864;CREB1:0.520610967834;POU3F1..4:0.517246876791;NKX2-2,8:0.50542659189;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.446678001111;ZBTB16:0.439669924314;RFX1:0.420595462329;TFDP1:0.415702008118;STAT2,4,6:0.310532020872;FOXM1:0.303121645915;NRF1:0.282971882932;ZNF143:0.251312694523;KLF4:0.20955530633;ZIC1..3:0.194281809409;IKZF2:0.18208908923;STAT5{A,B}:0.151473463178;FOXD3:0.148419179436;PAX4:0.139737022263;TLX1..3_NFIC{dimer}:0.131947243611;IRF7:0.106417803942;SP1:0.0869042488164;GZF1:0.0859636867878;RORA:0.0824054713477;TOPORS:0.0779700978945;LHX3,4:0.0773212422058;TBX4,5:0.0757616062024;ZNF238:0.074094665239;ARID5B:0.0685940459879;GCM1,2:0.0425087883358;PRDM1:0.0327407614336;ADNP_IRX_SIX_ZHX:0.00168516431372;HMGA1,2:-0.00945314607689;YY1:-0.033249502505;CDC5L:-0.0394822359827;TFAP4:-0.0399626835382;GTF2A1,2:-0.0426177082178;NR5A1,2:-0.061925513117;HOX{A4,D4}:-0.0800508550272;NKX2-3_NKX2-5:-0.0828609221395;HMX1:-0.121943380433;STAT1,3:-0.128010770578;AHR_ARNT_ARNT2:-0.138141045895;ESRRA:-0.142926275917;FOX{I1,J2}:-0.149100938212;NFIL3:-0.181397184074;RXR{A,B,G}:-0.186084632812;ATF5_CREB3:-0.206661211277;HNF4A_NR2F1,2:-0.236571741397;GATA6:-0.253913083001;NFATC1..3:-0.276810904882;ONECUT1,2:-0.283993233898;TAL1_TCF{3,4,12}:-0.289238696921;PDX1:-0.319099538959;MEF2{A,B,C,D}:-0.338578004674;IRF1,2:-0.346201966395;EVI1:-0.367875033125;HNF1A:-0.395681760686;TFCP2:-0.412028987462;NANOG{mouse}:-0.414998493189;PAX2:-0.452504785688;ZEB1:-0.454813131542;FOXN1:-0.458216680255;PBX1:-0.475746271344;POU5F1:-0.476011909354;HES1:-0.496074394093;IKZF1:-0.506038981138;NKX2-1,4:-0.531847975302;TBP:-0.546145727548;HAND1,2:-0.569039626141;ATF6:-0.569251640316;PAX1,9:-0.574765179058;NFY{A,B,C}:-0.581076803123;NFE2:-0.58440995363;TEAD1:-0.595352073255;ETS1,2:-0.601116706478;CEBPA,B_DDIT3:-0.617312129607;ESR1:-0.621120155099;SRF:-0.658628663542;SPIB:-0.659537719023;XCPE1{core}:-0.660445687648;FOXL1:-0.674840321043;FOSL2:-0.698825098819;TP53:-0.715323056028;NFE2L2:-0.726317582625;FOXA2:-0.730473532194;FOS_FOS{B,L1}_JUN{B,D}:-0.734471318966;HLF:-0.740040932693;NKX3-1:-0.746799839008;ALX4:-0.749303522578;T:-0.755771108223;BACH2:-0.770026302836;CDX1,2,4:-0.779909908293;UFEwm:-0.789249832297;ATF4:-0.790487745377;TEF:-0.795582547086;MYOD1:-0.811292641523;NFE2L1:-0.841191367557;TLX2:-0.876073330309;SPI1:-0.953334248793;RUNX1..3:-0.959683188528;POU1F1:-0.962701789915;POU2F1..3:-0.96644561159;GFI1:-0.97499100086;NFKB1_REL_RELA:-0.992158926087;SNAI1..3:-1.01330586878;HIF1A:-1.02192816242;DMAP1_NCOR{1,2}_SMARC:-1.05946828159;ELF1,2,4:-1.09418563647;PAX8:-1.09648107318;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.10331155255;AIRE:-1.14323762651;MYB:-1.18928851903;E2F1..5:-1.20703829632;VSX1,2:-1.23028327382;NR6A1:-1.33321544889;ELK1,4_GABP{A,B1}:-1.35680960174;bHLH_family:-1.44710578243;GLI1..3:-1.50337522868;PAX3,7:-1.56858768556;ZNF148:-1.60962899358;NR1H4:-1.70579982267;RXRA_VDR{dimer}:-1.76205880984;HSF1,2:-1.9966143511;EN1,2:-2.07372290766;HOX{A5,B5}:-2.09022899375;PPARG:-2.91062579172
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10277-104E7;search_select_hide=table117:FF:10277-104E7
}}
}}

Latest revision as of 13:57, 3 June 2020

Name:optic nerve, donor1
Species:Human (Homo sapiens)
Library ID:CNhs13449
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueoptic nerve
dev stageNA
sexmale
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationAlessandro Bonetti
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1-On
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005088
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13449 CAGE DRX008696 DRR009568
Accession ID Hg19

Library idBAMCTSS
CNhs13449 DRZ000993 DRZ002378
Accession ID Hg38

Library idBAMCTSS
CNhs13449 DRZ012343 DRZ013728
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.63
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.402
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0.385
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.195
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.636
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.574
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.542
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.805
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.0269
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.586
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0963
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.587
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.385
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial1.291
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0.827
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13449

Jaspar motifP-value
MA0002.20.124
MA0003.10.253
MA0004.10.159
MA0006.10.607
MA0007.10.636
MA0009.10.213
MA0014.10.382
MA0017.10.0115
MA0018.20.146
MA0019.10.918
MA0024.10.784
MA0025.10.654
MA0027.10.691
MA0028.10.00282
MA0029.10.297
MA0030.10.0961
MA0031.10.0926
MA0035.20.193
MA0038.10.769
MA0039.20.0351
MA0040.10.96
MA0041.10.703
MA0042.10.905
MA0043.10.806
MA0046.10.0953
MA0047.20.628
MA0048.10.0576
MA0050.10.00298
MA0051.10.0876
MA0052.10.202
MA0055.10.0019
MA0057.10.641
MA0058.10.229
MA0059.10.0507
MA0060.10.321
MA0061.16.3616e-4
MA0062.21.83862e-6
MA0065.20.0306
MA0066.10.0135
MA0067.10.712
MA0068.10.359
MA0069.10.864
MA0070.10.95
MA0071.10.0747
MA0072.10.82
MA0073.10.318
MA0074.10.395
MA0076.10.00168
MA0077.14.65675e-4
MA0078.10.06
MA0079.20.665
MA0080.28.91792e-7
MA0081.10.00652
MA0083.10.0781
MA0084.10.044
MA0087.10.0997
MA0088.10.25
MA0090.10.392
MA0091.10.535
MA0092.10.748
MA0093.10.17
MA0099.28.81409e-16
MA0100.10.277
MA0101.18.24592e-5
MA0102.20.18
MA0103.10.0426
MA0104.20.232
MA0105.11.0735e-4
MA0106.10.125
MA0107.16.84232e-5
MA0108.20.206
MA0111.10.838
MA0112.20.0033
MA0113.10.656
MA0114.10.0462
MA0115.10.973
MA0116.13.57985e-4
MA0117.10.524
MA0119.10.447
MA0122.10.499
MA0124.10.988
MA0125.10.234
MA0131.10.896
MA0135.10.432
MA0136.12.27782e-12
MA0137.20.625
MA0138.20.411
MA0139.10.399
MA0140.10.463
MA0141.10.00489
MA0142.10.893
MA0143.10.0915
MA0144.10.844
MA0145.10.742
MA0146.10.0504
MA0147.10.13
MA0148.10.916
MA0149.10.0424
MA0150.12.29449e-4
MA0152.10.77
MA0153.10.671
MA0154.10.04
MA0155.10.554
MA0156.14.12888e-9
MA0157.10.273
MA0159.10.0385
MA0160.10.0935
MA0162.10.314
MA0163.11.44545e-6
MA0164.10.59
MA0258.10.111
MA0259.10.716



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13449

Novel motifP-value
10.308
100.134
1000.788
1010.634
1020.651
1030.0219
1040.0227
1050.0587
1060.108
1070.513
1080.574
1090.00263
110.0122
1100.0553
1110.695
1120.44
1130.0204
1140.49
1150.419
1160.235
1170.0146
1180.369
1190.845
120.374
1200.0328
1210.848
1220.907
1230.00103
1240.536
1250.913
1260.145
1270.195
1280.698
1290.942
130.00522
1300.0568
1310.0035
1320.437
1330.114
1340.444
1350.879
1360.0031
1370.294
1380.463
1390.73
140.93
1400.179
1410.881
1420.497
1430.0808
1440.305
1450.792
1460.926
1470.985
1480.882
1490.177
150.102
1500.0808
1510.942
1520.0906
1530.297
1540.141
1550.771
1560.493
1570.434
1580.351
1590.0765
160.0549
1600.347
1610.329
1620.526
1630.798
1640.015
1650.0999
1660.821
1670.229
1680.67
1690.109
170.178
180.113
190.445
20.737
200.185
210.161
220.237
230.793
240.0022
250.467
260.143
270.297
280.936
295.1869e-4
30.0842
300.597
310.766
320.0243
330.15
340.667
350.749
360.583
370.0315
380.615
390.465
40.635
400.196
410.605
420.421
430.287
440.00703
450.824
460.085
470.0787
480.055
490.49
50.455
500.629
510.607
520.976
530.14
540.908
550.831
560.936
570.815
580.286
590.0326
60.55
600.203
610.13
620.135
630.96
640.178
650.381
660.0837
670.676
680.206
690.435
70.135
700.713
710.00806
720.0678
730.0226
740.79
750.0104
760.685
770.1
780.0165
790.15
80.104
800.324
810.532
820.96
830.0247
840.49
850.351
860.21
870.00108
880.578
890.128
90.252
900.626
910.363
920.668
930.569
940.466
950.00285
960.274
970.88
980.426
990.761



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13449


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000941 (cranial nerve II)
0003714 (neural tissue)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0005162 (multi cell component structure)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0001785 (cranial nerve)
0002464 (nerve trunk)
0004904 (nerve connecting eye with brain)
0000122 (neuron projection bundle)
0001021 (nerve)
0004732 (segmental subdivision of nervous system)
0001032 (sensory system)
0010317 (germ layer / neural crest derived structure)
0000010 (peripheral nervous system)
0001016 (nervous system)
0002104 (visual system)
0004456 (entire sense organ system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0011166 (human optic nerve sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0003056 (pre-chordal neural plate)
UBERON:0005425 (presumptive neural retina)
UBERON:0010316 (germ layer / neural crest)

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