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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS007718
|DRA_sample_Accession=CAGE@SAMD00005708
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005708
|accession_numbers=CAGE;DRX007823;DRR008695;DRZ000120;DRZ001505;DRZ011470;DRZ012855
|accession_numbers_RNASeq=RNA-Seq;DRX057145;DRR062904;DRZ007980
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002369,UBERON:0002100,UBERON:0001851,UBERON:0001235,UBERON:0000064,UBERON:0010314,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0005172,UBERON:0002530,UBERON:0006858,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0000916
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002369,UBERON:0002100,UBERON:0001851,UBERON:0001235,UBERON:0000064,UBERON:0010314,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0005172,UBERON:0002530,UBERON:0006858,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0000916
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
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chr19:21688387..21688432,+!p1@ZNF429!0.21!8.25!ZNF429;;chr6:143266297..143266356,-!p1@HIVEP2!0.21!6.31!HIVEP2;;chr19:21512144..21512191,-!p2@ZNF708!0.21!6.07!ZNF708;;chr19:53289995..53290050,-!p1@ZNF600!0.21!5.34!ZNF600;;chr19:9785724..9785740,-!p2@ZNF562!0.21!5.10!ZNF562;;chr12:104531854..104531893,-!p2@NFYB!0.21!4.61!NFYB;;chr19:58326267..58326292,-!p1@ZNF552!0.21!4.49!ZNF552;;chr8:144373550..144373617,+!p1@ZNF696!0.21!4.49!ZNF696;;chr1:23694794..23694863,-!p1@ZNF436!0.21!4.25!ZNF436;;chr7:74072135..74072171,+!p2@GTF2I!0.21!3.76!GTF2I;;chr5:178157609..178157650,-!p2@ZNF354A!0.21!3.28!ZNF354A;;chr2:178128250..178128293,-!p6@NFE2L2!0.21!2.91!NFE2L2;;chr7:102985288..102985310,-!p2@DNAJC2!0.21!2.67!DNAJC2;;chr7:99102267..99102304,+!p2@ZKSCAN5!0.21!2.67!ZKSCAN5;;chr12:80084167..80084197,-!p5@PAWR!0.21!2.67!PAWR;;chr19:58570605..58570655,+!p1@ZNF135!0.21!1.82!ZNF135;;chr1:59165763..59165780,-!p2@MYSM1!0.21!1.82!MYSM1;;chr12:6798523..6798548,-!p6@ZNF384!0.21!1.70!ZNF384;;chr6:28303901..28303944,-!p2@ZNF323!0.21!1.58!ZNF323;;chr5:178322893..178322931,+!p1@ZFP2!0.21!1.33!ZFP2;;chr10:94449649..94449664,+!p3@HHEX!0.21!1.33!HHEX;;chr12:56401175..56401225,+!p3@IKZF4!0.21!1.33!IKZF4;;chr19:20011731..20011743,+!p3@ZNF93!0.21!1.09!ZNF93;;chr20:52210338..52210352,-!p4@ZNF217!0.21!0.97!ZNF217;;chr19:19303794..19303805,+!p5@RFXANK!0.21!0.85!RFXANK;;chr15:37391614..37391626,-!p18@MEIS2!0.21!0.61!MEIS2;;chr17:46655578..46655589,-!p4@HOXB4!0.21!0.61!HOXB4;;chr17:46703240..46703257,-!p6@HOXB9!0.21!0.61!HOXB9;;chr17:48045917..48045977,+!p1@DLX4!0.21!0.61!DLX4;;chr18:55102628..55102646,+!p2@ONECUT2!0.21!0.61!ONECUT2;;chr19:38720356..38720369,-!p4@DPF1!0.21!0.61!DPF1;;chr19:50529307..50529323,+!p3@ZNF473!0.21!0.61!ZNF473;;chr1:3569101..3569115,+!p2@TP73!0.21!0.61!TP73;;chr1:3569135..3569150,+!p3@TP73!0.21!0.61!TP73;;chr1:8763394..8763399,-!p34@RERE!0.21!0.61!RERE;;chr20:2673369..2673382,+!p2@EBF4!0.21!0.61!EBF4;;chr6:21597499..21597513,+!p16@SOX4!0.21!0.61!SOX4;;chr7:21468134..21468143,+!p6@SP4!0.21!0.61!SP4;;chr8:144512897..144512903,-!p1@MAFA!0.21!0.61!MAFA;;chr8:30891078..30891128,-!p2@PURG!0.21!0.61!PURG;;chr2:176987441..176987454,+!p1@HOXD9!0.21!0.61!HOXD9;;chr2:176995011..176995029,+!p6@HOXD8!0.21!0.61!HOXD8;;chr2:200322259..200322280,-!p5@SATB2!0.21!0.61!SATB2;;chr3:181430496..181430506,+!p6@SOX2!0.21!0.61!SOX2;;chr3:25469815..25469866,+!p3@RARB!0.21!0.61!RARB;;chr10:102505312..102505320,+!p6@PAX2!0.21!0.61!PAX2;;chr11:31832610..31832639,-!p5@PAX6!0.21!0.61!PAX6;;chr11:64764402..64764413,-!p2@BATF2!0.21!0.61!BATF2;;chr11:8040739..8040815,+!p4@TUB!0.21!0.61!TUB;;chr12:54332608..54332636,+!p1@HOXC13!0.21!0.61!HOXC13;;chr12:54379477..54379498,+!p5@HOXC5!0.21!0.61!HOXC5;;chr13:100633726..100633749,+!p6@ZIC2!0.21!0.61!ZIC2;;chr14:33408057..33408068,+!p9@NPAS3!0.21!0.61!NPAS3;;chr14:45722418..45722426,-!p6@MIS18BP1!0.21!0.61!MIS18BP1;;chr9:14308004..14308041,-!p14@NFIB!0.21!0.61!NFIB;;chr9:14314946..14314983,-!p8@NFIB!0.21!0.61!NFIB;;chr19:6424813..6424835,-!p1@KHSRP!0.20!88.47!KHSRP;;chr19:56154958..56155027,+!p1@ZNF581!0.20!47.33!ZNF581;;chr19:58331088..58331106,+!p1@ZNF587!0.20!19.66!ZNF587;;chr6:155635583..155635644,-!p1@TFB1M!0.20!18.08!TFB1M;;chr7:44925044..44925156,-!p1@PURB!0.20!10.80!PURB;;chr19:58740266..58740297,+!p1@ZNF544!0.20!9.71!ZNF544;;chr6:33422343..33422394,+!p1@ZBTB9!0.20!8.86!ZBTB9;;chr16:3450963..3451019,-!p1@ZNF434!0.20!8.13!ZNF434;;chr19:52511437..52511490,-!p1@ZNF615!0.20!7.65!ZNF615;;chr15:57025759..57025811,-!p2@ZNF280D!0.20!6.67!ZNF280D;;chr17:41322281..41322328,-!p2@BRCA1!0.20!3.40!BRCA1;;chr19:37341160..37341194,-!p2@ZNF790!0.20!2.31!ZNF790;;chr1:249153114..249153175,-!p3@ZNF692!0.20!1.94!ZNF692;;chr12:52430894..52430952,+!p3@NR4A1!0.20!1.94!NR4A1;;chr3:178789622..178789633,-!p3@ZMAT3!0.20!1.94!ZMAT3;;
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chr19:21688387..21688432,+!p1@ZNF429!0.21!8.25!ZNF429;;chr6:143266297..143266356,-!p1@HIVEP2!0.21!6.31!HIVEP2;;chr19:21512144..21512191,-!p2@ZNF708!0.21!6.07!ZNF708;;chr19:53289995..53290050,-!p1@ZNF600!0.21!5.34!ZNF600;;chr19:9785724..9785740,-!p2@ZNF562!0.21!5.10!ZNF562;;chr12:104531854..104531893,-!p2@NFYB!0.21!4.61!NFYB;;chr19:58326267..58326292,-!p1@ZNF552!0.21!4.49!ZNF552;;chr8:144373550..144373617,+!p1@ZNF696!0.21!4.49!ZNF696;;chr1:23694794..23694863,-!p1@ZNF436!0.21!4.25!ZNF436;;chr7:74072135..74072171,+!p2@GTF2I!0.21!3.76!GTF2I;;chr5:178157609..178157650,-!p2@ZNF354A!0.21!3.28!ZNF354A;;chr2:178128250..178128293,-!p6@NFE2L2!0.21!2.91!NFE2L2;;chr7:102985288..102985310,-!p2@DNAJC2!0.21!2.67!DNAJC2;;chr7:99102267..99102304,+!p2@ZKSCAN5!0.21!2.67!ZKSCAN5;;chr12:80084167..80084197,-!p5@PAWR!0.21!2.67!PAWR;;chr19:58570605..58570655,+!p1@ZNF135!0.21!1.82!ZNF135;;chr1:59165763..59165780,-!p2@MYSM1!0.21!1.82!MYSM1;;chr12:6798523..6798548,-!p6@ZNF384!0.21!1.70!ZNF384;;chr6:28303901..28303944,-!p2@ZNF323!0.21!1.58!ZNF323;;chr5:178322893..178322931,+!p1@ZFP2!0.21!1.33!ZFP2;;chr10:94449649..94449664,+!p3@HHEX!0.21!1.33!HHEX;;chr12:56401175..56401225,+!p3@IKZF4!0.21!1.33!IKZF4;;chr19:20011731..20011743,+!p3@ZNF93!0.21!1.09!ZNF93;;chr20:52210338..52210352,-!p4@ZNF217!0.21!0.97!ZNF217;;chr19:19303794..19303805,+!p5@RFXANK!0.21!0.85!RFXANK;;chr15:37391614..37391626,-!p18@MEIS2!0.21!0.61!MEIS2;;chr17:46655578..46655589,-!p4@HOXB4!0.21!0.61!HOXB4;;chr17:46703240..46703257,-!p6@HOXB9!0.21!0.61!HOXB9;;chr17:48045917..48045977,+!p1@DLX4!0.21!0.61!DLX4;;chr18:55102628..55102646,+!p2@ONECUT2!0.21!0.61!ONECUT2;;chr19:38720356..38720369,-!p4@DPF1!0.21!0.61!DPF1;;chr19:50529307..50529323,+!p3@ZNF473!0.21!0.61!ZNF473;;chr1:3569101..3569115,+!p2@TP73!0.21!0.61!TP73;;chr1:3569135..3569150,+!p3@TP73!0.21!0.61!TP73;;chr1:8763394..8763399,-!p34@RERE!0.21!0.61!RERE;;chr20:2673369..2673382,+!p2@EBF4!0.21!0.61!EBF4;;chr6:21597499..21597513,+!p16@SOX4!0.21!0.61!SOX4;;chr7:21468134..21468143,+!p6@SP4!0.21!0.61!SP4;;chr8:144512897..144512903,-!p1@MAFA!0.21!0.61!MAFA;;chr8:30891078..30891128,-!p2@PURG!0.21!0.61!PURG;;chr2:176987441..176987454,+!p1@HOXD9!0.21!0.61!HOXD9;;chr2:176995011..176995029,+!p6@HOXD8!0.21!0.61!HOXD8;;chr2:200322259..200322280,-!p5@SATB2!0.21!0.61!SATB2;;chr3:181430496..181430506,+!p6@SOX2!0.21!0.61!SOX2;;chr3:25469815..25469866,+!p3@RARB!0.21!0.61!RARB;;chr10:102505312..102505320,+!p6@PAX2!0.21!0.61!PAX2;;chr11:31832610..31832639,-!p5@PAX6!0.21!0.61!PAX6;;chr11:64764402..64764413,-!p2@BATF2!0.21!0.61!BATF2;;chr11:8040739..8040815,+!p4@TUB!0.21!0.61!TUB;;chr12:54332608..54332636,+!p1@HOXC13!0.21!0.61!HOXC13;;chr12:54379477..54379498,+!p5@HOXC5!0.21!0.61!HOXC5;;chr13:100633726..100633749,+!p6@ZIC2!0.21!0.61!ZIC2;;chr14:33408057..33408068,+!p9@NPAS3!0.21!0.61!NPAS3;;chr14:45722418..45722426,-!p6@MIS18BP1!0.21!0.61!MIS18BP1;;chr9:14308004..14308041,-!p14@NFIB!0.21!0.61!NFIB;;chr9:14314946..14314983,-!p8@NFIB!0.21!0.61!NFIB;;chr19:6424813..6424835,-!p1@KHSRP!0.20!88.47!KHSRP;;chr19:56154958..56155027,+!p1@ZNF581!0.20!47.33!ZNF581;;chr19:58331088..58331106,+!p1@ZNF587!0.20!19.66!ZNF587;;chr6:155635583..155635644,-!p1@TFB1M!0.20!18.08!TFB1M;;chr7:44925044..44925156,-!p1@PURB!0.20!10.80!PURB;;chr19:58740266..58740297,+!p1@ZNF544!0.20!9.71!ZNF544;;chr6:33422343..33422394,+!p1@ZBTB9!0.20!8.86!ZBTB9;;chr16:3450963..3451019,-!p1@ZNF434!0.20!8.13!ZNF434;;chr19:52511437..52511490,-!p1@ZNF615!0.20!7.65!ZNF615;;chr15:57025759..57025811,-!p2@ZNF280D!0.20!6.67!ZNF280D;;chr17:41322281..41322328,-!p2@BRCA1!0.20!3.40!BRCA1;;chr19:37341160..37341194,-!p2@ZNF790!0.20!2.31!ZNF790;;chr1:249153114..249153175,-!p3@ZNF692!0.20!1.94!ZNF692;;chr12:52430894..52430952,+!p3@NR4A1!0.20!1.94!NR4A1;;chr3:178789622..178789633,-!p3@ZMAT3!0.20!1.94!ZMAT3;;
Line 39: Line 43:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/adrenal%2520cortex%2520adenocarcinoma%2520cell%2520line%253aSW-13.CNhs11893.10810-111A9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/adrenal%2520cortex%2520adenocarcinoma%2520cell%2520line%253aSW-13.CNhs11893.10810-111A9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/adrenal%2520cortex%2520adenocarcinoma%2520cell%2520line%253aSW-13.CNhs11893.10810-111A9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/adrenal%2520cortex%2520adenocarcinoma%2520cell%2520line%253aSW-13.CNhs11893.10810-111A9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/adrenal%2520cortex%2520adenocarcinoma%2520cell%2520line%253aSW-13.CNhs11893.10810-111A9.hg38.nobarcode.ctss.bed.gz
|id=FF:10810-111A9
|id=FF:10810-111A9
|is_a=DOID:7;;EFO:0002091;;FF:0000210;;FF:0100167;;UBERON:0001235
|is_a=DOID:7;;EFO:0002091;;FF:0000210;;FF:0100167;;UBERON:0001235
|is_obsolete=
|is_obsolete=
|library_ids=CNhs11893
|library_id=CNhs11893
|library_id_phase_based=2:CNhs11893
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10810
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10810
|name=adrenal cortex adenocarcinoma cell line:SW-13
|name=adrenal cortex adenocarcinoma cell line:SW-13
|namespace=FANTOM5
|namespace=FANTOM5
Line 48: Line 62:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11893,LSID830,release010,COMPLETED
|profile_hcage=CNhs11893,LSID830,release010,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=cell lines
Line 87: Line 103:
|top_motifs=NRF1:2.27862748454;ELK1,4_GABP{A,B1}:1.985631442;CRX:1.7582384136;PPARG:1.71771821788;ZNF143:1.66885138691;NANOG:1.59145877697;NFY{A,B,C}:1.48400984147;VSX1,2:1.4415073775;GFI1:1.42292769238;PAX8:1.33369678592;E2F1..5:1.27153384789;TFDP1:1.22193738226;ALX1:1.21437588511;NKX2-3_NKX2-5:1.13734680921;PAX4:1.03704747859;POU1F1:1.00782782659;PBX1:1.0006606723;STAT1,3:0.989935733115;PAX1,9:0.971228801936;HOX{A6,A7,B6,B7}:0.940686148101;ONECUT1,2:0.924556431255;RFX1:0.842219889962;LHX3,4:0.794525910687;NKX6-1,2:0.779049531738;AIRE:0.712896675565;MYB:0.687919078819;ARID5B:0.666041896853;SOX17:0.665622536125;FOXQ1:0.650281064083;HOX{A4,D4}:0.62747508164;YY1:0.609377861381;HIC1:0.575928284826;BREu{core}:0.527811037255;EVI1:0.52740722478;HOX{A5,B5}:0.521647003832;T:0.51258467067;OCT4_SOX2{dimer}:0.508162970826;RBPJ:0.504747158101;TEF:0.479186654898;GATA6:0.422979278139;PRRX1,2:0.412242125126;FOX{I1,J2}:0.393944226519;SOX{8,9,10}:0.369738148203;CDX1,2,4:0.34717279035;STAT5{A,B}:0.341224537571;HMGA1,2:0.340026803484;ZNF384:0.324903456898;FOXM1:0.315842855118;PAX3,7:0.31193649109;EN1,2:0.287810239912;LEF1_TCF7_TCF7L1,2:0.238259655838;NR5A1,2:0.23599108503;NR6A1:0.232352583208;PITX1..3:0.230534913895;ADNP_IRX_SIX_ZHX:0.20503996838;HNF4A_NR2F1,2:0.201895179425;HBP1_HMGB_SSRP1_UBTF:0.195633473582;HSF1,2:0.19375550215;ZFP161:0.193192537261;CUX2:0.178879855849;IKZF1:0.163349275795;IKZF2:0.15612287272;ZEB1:0.122591524536;SP1:0.101966626926;POU6F1:0.0815153974945;POU2F1..3:0.0708605350342;KLF4:0.024201833253;HAND1,2:0.0238503015365;FOXA2:0.0234841442728;SREBF1,2:0.0193419295879;GCM1,2:0.0191830657247;ATF5_CREB3:0.0181135623924;EGR1..3:0.00705710380978;REST:-0.0127749997867;GFI1B:-0.0308193546161;DMAP1_NCOR{1,2}_SMARC:-0.0338030648298;FOXP3:-0.034142922726;FOXN1:-0.0351303595437;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0472635458934;TFAP2B:-0.0666832776353;GTF2A1,2:-0.0669982645724;FOXP1:-0.0917479459679;TEAD1:-0.100222540673;ESRRA:-0.137829752094;CREB1:-0.154027163687;NKX2-1,4:-0.176115219049;CDC5L:-0.188492686843;TGIF1:-0.202828175553;FOXL1:-0.202949713015;PATZ1:-0.210510669909;RORA:-0.22704028649;SNAI1..3:-0.232088131984;RUNX1..3:-0.236151959085;ZBTB16:-0.246925452666;ZBTB6:-0.250108087985;HNF1A:-0.278300423534;HOXA9_MEIS1:-0.295303419132;HES1:-0.299229777288;RREB1:-0.310055607252;LMO2:-0.311009450182;AHR_ARNT_ARNT2:-0.313463560235;MYOD1:-0.316670320503;ELF1,2,4:-0.320718485869;NKX3-2:-0.322538958081;NFKB1_REL_RELA:-0.331498011717;PDX1:-0.337506078281;DBP:-0.351429109429;NFE2L2:-0.352774883809;TP53:-0.365037590395;POU3F1..4:-0.366016290037;UFEwm:-0.376395808771;bHLH_family:-0.382753997328;SOX2:-0.402873682212;MEF2{A,B,C,D}:-0.408263600642;XBP1:-0.417406332081;RXR{A,B,G}:-0.418685953327;MZF1:-0.421304539278;RFX2..5_RFXANK_RFXAP:-0.42856818849;FOS_FOS{B,L1}_JUN{B,D}:-0.435341449237;FOSL2:-0.46819096424;PAX5:-0.488814274748;PRDM1:-0.49193060081;JUN:-0.501841414196;SRF:-0.505948888139;NFE2L1:-0.509627603754;SPIB:-0.517863626108;ATF2:-0.531757509433;PAX6:-0.534515220097;SPI1:-0.538085217915;AR:-0.553623713032;NR3C1:-0.554478689406;NANOG{mouse}:-0.556788391002;NFE2:-0.558162707072;ATF4:-0.567365997577;TOPORS:-0.568884427105;HLF:-0.569962065265;BACH2:-0.582818900429;XCPE1{core}:-0.588466373635;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.590255472496;NHLH1,2:-0.601935297364;MED-1{core}:-0.630420764188;TAL1_TCF{3,4,12}:-0.66239441003;MTE{core}:-0.674738961763;PAX2:-0.684924230513;ZIC1..3:-0.695608010784;SOX5:-0.698298079247;FOX{D1,D2}:-0.705943006118;ZNF148:-0.722138068552;GATA4:-0.724766687438;FOXD3:-0.736998487825;TLX1..3_NFIC{dimer}:-0.753965875352;ESR1:-0.757668310934;GTF2I:-0.776778810093;MYBL2:-0.783153215615;NKX3-1:-0.785376893874;POU5F1:-0.79111070154;NFIX:-0.793899730809;MTF1:-0.886437397112;ALX4:-0.891560767863;FOXO1,3,4:-0.915868690151;BPTF:-0.933167230516;ETS1,2:-0.940395531867;NFIL3:-0.941591272632;FOX{F1,F2,J1}:-0.962486661269;NKX2-2,8:-0.970981838627;IRF7:-0.974314450478;TFAP2{A,C}:-0.994624285089;MYFfamily:-1.04265004254;ZNF423:-1.06032027298;NFATC1..3:-1.0692906736;TLX2:-1.07670625323;SPZ1:-1.08479737025;GLI1..3:-1.10203362322;CEBPA,B_DDIT3:-1.13242628214;ZNF238:-1.13468500785;EP300:-1.14577049006;NR1H4:-1.17165450435;TFAP4:-1.21307014736;IRF1,2:-1.26273301411;STAT2,4,6:-1.26410828874;EBF1:-1.27638544596;MAZ:-1.29028614029;TFCP2:-1.3371682509;ATF6:-1.35026832235;HMX1:-1.35042397375;GZF1:-1.35566603468;HIF1A:-1.38977492823;SMAD1..7,9:-1.53097223013;TBP:-1.59874586588;RXRA_VDR{dimer}:-1.65517122003;MAFB:-1.73823918554;TBX4,5:-1.96209347971
|top_motifs=NRF1:2.27862748454;ELK1,4_GABP{A,B1}:1.985631442;CRX:1.7582384136;PPARG:1.71771821788;ZNF143:1.66885138691;NANOG:1.59145877697;NFY{A,B,C}:1.48400984147;VSX1,2:1.4415073775;GFI1:1.42292769238;PAX8:1.33369678592;E2F1..5:1.27153384789;TFDP1:1.22193738226;ALX1:1.21437588511;NKX2-3_NKX2-5:1.13734680921;PAX4:1.03704747859;POU1F1:1.00782782659;PBX1:1.0006606723;STAT1,3:0.989935733115;PAX1,9:0.971228801936;HOX{A6,A7,B6,B7}:0.940686148101;ONECUT1,2:0.924556431255;RFX1:0.842219889962;LHX3,4:0.794525910687;NKX6-1,2:0.779049531738;AIRE:0.712896675565;MYB:0.687919078819;ARID5B:0.666041896853;SOX17:0.665622536125;FOXQ1:0.650281064083;HOX{A4,D4}:0.62747508164;YY1:0.609377861381;HIC1:0.575928284826;BREu{core}:0.527811037255;EVI1:0.52740722478;HOX{A5,B5}:0.521647003832;T:0.51258467067;OCT4_SOX2{dimer}:0.508162970826;RBPJ:0.504747158101;TEF:0.479186654898;GATA6:0.422979278139;PRRX1,2:0.412242125126;FOX{I1,J2}:0.393944226519;SOX{8,9,10}:0.369738148203;CDX1,2,4:0.34717279035;STAT5{A,B}:0.341224537571;HMGA1,2:0.340026803484;ZNF384:0.324903456898;FOXM1:0.315842855118;PAX3,7:0.31193649109;EN1,2:0.287810239912;LEF1_TCF7_TCF7L1,2:0.238259655838;NR5A1,2:0.23599108503;NR6A1:0.232352583208;PITX1..3:0.230534913895;ADNP_IRX_SIX_ZHX:0.20503996838;HNF4A_NR2F1,2:0.201895179425;HBP1_HMGB_SSRP1_UBTF:0.195633473582;HSF1,2:0.19375550215;ZFP161:0.193192537261;CUX2:0.178879855849;IKZF1:0.163349275795;IKZF2:0.15612287272;ZEB1:0.122591524536;SP1:0.101966626926;POU6F1:0.0815153974945;POU2F1..3:0.0708605350342;KLF4:0.024201833253;HAND1,2:0.0238503015365;FOXA2:0.0234841442728;SREBF1,2:0.0193419295879;GCM1,2:0.0191830657247;ATF5_CREB3:0.0181135623924;EGR1..3:0.00705710380978;REST:-0.0127749997867;GFI1B:-0.0308193546161;DMAP1_NCOR{1,2}_SMARC:-0.0338030648298;FOXP3:-0.034142922726;FOXN1:-0.0351303595437;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0472635458934;TFAP2B:-0.0666832776353;GTF2A1,2:-0.0669982645724;FOXP1:-0.0917479459679;TEAD1:-0.100222540673;ESRRA:-0.137829752094;CREB1:-0.154027163687;NKX2-1,4:-0.176115219049;CDC5L:-0.188492686843;TGIF1:-0.202828175553;FOXL1:-0.202949713015;PATZ1:-0.210510669909;RORA:-0.22704028649;SNAI1..3:-0.232088131984;RUNX1..3:-0.236151959085;ZBTB16:-0.246925452666;ZBTB6:-0.250108087985;HNF1A:-0.278300423534;HOXA9_MEIS1:-0.295303419132;HES1:-0.299229777288;RREB1:-0.310055607252;LMO2:-0.311009450182;AHR_ARNT_ARNT2:-0.313463560235;MYOD1:-0.316670320503;ELF1,2,4:-0.320718485869;NKX3-2:-0.322538958081;NFKB1_REL_RELA:-0.331498011717;PDX1:-0.337506078281;DBP:-0.351429109429;NFE2L2:-0.352774883809;TP53:-0.365037590395;POU3F1..4:-0.366016290037;UFEwm:-0.376395808771;bHLH_family:-0.382753997328;SOX2:-0.402873682212;MEF2{A,B,C,D}:-0.408263600642;XBP1:-0.417406332081;RXR{A,B,G}:-0.418685953327;MZF1:-0.421304539278;RFX2..5_RFXANK_RFXAP:-0.42856818849;FOS_FOS{B,L1}_JUN{B,D}:-0.435341449237;FOSL2:-0.46819096424;PAX5:-0.488814274748;PRDM1:-0.49193060081;JUN:-0.501841414196;SRF:-0.505948888139;NFE2L1:-0.509627603754;SPIB:-0.517863626108;ATF2:-0.531757509433;PAX6:-0.534515220097;SPI1:-0.538085217915;AR:-0.553623713032;NR3C1:-0.554478689406;NANOG{mouse}:-0.556788391002;NFE2:-0.558162707072;ATF4:-0.567365997577;TOPORS:-0.568884427105;HLF:-0.569962065265;BACH2:-0.582818900429;XCPE1{core}:-0.588466373635;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.590255472496;NHLH1,2:-0.601935297364;MED-1{core}:-0.630420764188;TAL1_TCF{3,4,12}:-0.66239441003;MTE{core}:-0.674738961763;PAX2:-0.684924230513;ZIC1..3:-0.695608010784;SOX5:-0.698298079247;FOX{D1,D2}:-0.705943006118;ZNF148:-0.722138068552;GATA4:-0.724766687438;FOXD3:-0.736998487825;TLX1..3_NFIC{dimer}:-0.753965875352;ESR1:-0.757668310934;GTF2I:-0.776778810093;MYBL2:-0.783153215615;NKX3-1:-0.785376893874;POU5F1:-0.79111070154;NFIX:-0.793899730809;MTF1:-0.886437397112;ALX4:-0.891560767863;FOXO1,3,4:-0.915868690151;BPTF:-0.933167230516;ETS1,2:-0.940395531867;NFIL3:-0.941591272632;FOX{F1,F2,J1}:-0.962486661269;NKX2-2,8:-0.970981838627;IRF7:-0.974314450478;TFAP2{A,C}:-0.994624285089;MYFfamily:-1.04265004254;ZNF423:-1.06032027298;NFATC1..3:-1.0692906736;TLX2:-1.07670625323;SPZ1:-1.08479737025;GLI1..3:-1.10203362322;CEBPA,B_DDIT3:-1.13242628214;ZNF238:-1.13468500785;EP300:-1.14577049006;NR1H4:-1.17165450435;TFAP4:-1.21307014736;IRF1,2:-1.26273301411;STAT2,4,6:-1.26410828874;EBF1:-1.27638544596;MAZ:-1.29028614029;TFCP2:-1.3371682509;ATF6:-1.35026832235;HMX1:-1.35042397375;GZF1:-1.35566603468;HIF1A:-1.38977492823;SMAD1..7,9:-1.53097223013;TBP:-1.59874586588;RXRA_VDR{dimer}:-1.65517122003;MAFB:-1.73823918554;TBX4,5:-1.96209347971
|xref=
|xref=
}} {{DRAAccessionNumbers
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10810-111A9;search_select_hide=table117:FF:10810-111A9
|DRA_sample_Accession=CAGE@DRS007718
|accession_numbers=DRX007823;DRR008695;DRZ000120;DRZ001505;CAGE
|library_id=CNhs11893
}}
}}

Latest revision as of 15:06, 3 June 2020

Name:adrenal cortex adenocarcinoma cell line:SW-13
Species:Human (Homo sapiens)
Library ID:CNhs11893
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueadrenal gland
dev stageNA
sexfemale
ageunknown
cell typeadrenal cortex cell
cell lineSW-13
companyJAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005708
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11893 CAGE DRX007823 DRR008695
Accession ID Hg19

Library idBAMCTSS
CNhs11893 DRZ000120 DRZ001505
Accession ID Hg38

Library idBAMCTSS
CNhs11893 DRZ011470 DRZ012855
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
RNA-Seq  SAMD00005708
Library accession numbers

Library idMethodExp. accession idRun accession id
RDhi10088 RNA-Seq DRX057145 DRR062904
Accession ID Hg19

Library idBAMCTSS
RDhi10088 DRZ007980


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.116
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.518
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0.912
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0664
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0658
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0803
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.049
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0761
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.138
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.023
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.5
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11893

Jaspar motifP-value
MA0002.20.0066
MA0003.10.246
MA0004.10.794
MA0006.10.36
MA0007.10.759
MA0009.10.513
MA0014.10.856
MA0017.10.0552
MA0018.20.383
MA0019.10.94
MA0024.13.41186e-4
MA0025.10.817
MA0027.10.342
MA0028.15.874e-6
MA0029.10.289
MA0030.10.00344
MA0031.10.205
MA0035.20.145
MA0038.12.08091e-5
MA0039.20.321
MA0040.10.266
MA0041.10.791
MA0042.10.503
MA0043.10.539
MA0046.10.142
MA0047.20.255
MA0048.10.323
MA0050.13.99956e-9
MA0051.13.29211e-6
MA0052.10.0027
MA0055.10.0039
MA0057.10.81
MA0058.10.898
MA0059.10.876
MA0060.15.81915e-16
MA0061.10.0532
MA0062.21.43517e-7
MA0065.20.317
MA0066.10.675
MA0067.10.98
MA0068.10.647
MA0069.10.768
MA0070.10.481
MA0071.10.846
MA0072.10.108
MA0073.10.606
MA0074.10.186
MA0076.11.21815e-7
MA0077.10.97
MA0078.10.737
MA0079.20.717
MA0080.28.75972e-11
MA0081.10.34
MA0083.10.0973
MA0084.10.351
MA0087.10.417
MA0088.10.0287
MA0090.10.414
MA0091.10.00474
MA0092.10.157
MA0093.10.628
MA0099.23.42688e-13
MA0100.10.192
MA0101.10.836
MA0102.21.80134e-4
MA0103.10.928
MA0104.20.208
MA0105.10.0102
MA0106.10.521
MA0107.10.395
MA0108.24.54337e-7
MA0111.10.974
MA0112.22.73272e-4
MA0113.10.0309
MA0114.10.939
MA0115.10.808
MA0116.10.0454
MA0117.10.801
MA0119.10.0836
MA0122.10.95
MA0124.10.742
MA0125.10.351
MA0131.10.158
MA0135.10.87
MA0136.11.51305e-6
MA0137.20.262
MA0138.20.549
MA0139.10.0356
MA0140.10.171
MA0141.10.447
MA0142.10.942
MA0143.10.0459
MA0144.10.0189
MA0145.10.103
MA0146.10.411
MA0147.10.126
MA0148.10.196
MA0149.10.565
MA0150.15.49666e-4
MA0152.10.343
MA0153.10.161
MA0154.10.0144
MA0155.10.309
MA0156.10.321
MA0157.10.46
MA0159.10.123
MA0160.10.695
MA0162.10.0449
MA0163.10.164
MA0164.10.778
MA0258.10.0228
MA0259.10.0728



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11893

Novel motifP-value
10.93
100.782
1000.474
1010.806
1020.656
1030.446
1040.666
1050.575
1061.176e-7
1070.00217
1080.533
1090.563
110.623
1100.87
1110.825
1120.00651
1130.0486
1140.234
1150.399
1160.733
1170.966
1180.327
1190.814
120.709
1200.857
1210.297
1220.81
1230.914
1240.59
1250.733
1260.97
1270.773
1280.00213
1290.745
130.953
1300.0235
1310.0316
1320.585
1330.117
1340.0785
1350.0212
1360.268
1370.276
1380.422
1390.025
140.471
1400.0534
1410.56
1420.976
1430.169
1440.95
1450.638
1460.389
1470.89
1480.00466
1490.0553
150.417
1500.276
1510.247
1520.029
1530.534
1540.7
1550.672
1560.736
1570.277
1580.746
1590.421
160.352
1600.197
1610.774
1620.784
1630.0641
1640.441
1650.186
1660.124
1670.142
1680.114
1690.0129
170.155
180.0719
190.072
20.0501
200.247
210.468
220.18
230.0032
240.886
250.634
260.456
270.124
280.899
290.751
30.363
300.453
310.677
320.0325
330.776
340.333
350.798
360.235
370.15
380.56
390.439
40.208
400.316
410.408
420.823
430.199
440.665
450.323
460.109
470.789
480.932
490.472
50.357
500.768
510.744
520.00476
530.351
540.603
550.766
560.577
570.978
580.142
590.0635
60.967
600.00138
610.835
620.0736
630.205
640.82
650.058
660.00976
670.806
680.039
690.72
70.787
700.338
710.163
720.181
730.177
740.435
750.862
760.714
770.0911
780.56
790.327
80.477
800.0662
810.45
820.0935
830.575
840.528
850.00418
860.427
870.667
880.614
890.28
90.0861
900.492
910.00716
920.161
930.231
940.141
950.167
960.394
970.808
980.728
990.665



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11893


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)
299 (adenocarcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002369 (adrenal gland)
0002100 (trunk)
0001851 (cortex)
0001235 (adrenal cortex)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0005172 (abdomen element)
0002530 (gland)
0006858 (adrenal/interrenal gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100167 (adenocarcinoma cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

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