FF:10844-111E7: Difference between revisions

Latest revision as of 15:09, 3 June 2020

Name:	merkel cell carcinoma cell line:MS-1
Species:	Human (Homo sapiens)
Library ID:	CNhs12839
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	skin
dev stage	NA
sex	unknown
age	unknown
cell type	merkel cell
cell line	MS-1
company	ECACC
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005928

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12839		CAGE		DRX007934		DRR008806

Accession ID Hg19

Library id		BAM		CTSS
CNhs12839		DRZ000231		DRZ001616

Accession ID Hg38

Library id		BAM		CTSS
CNhs12839		DRZ011581		DRZ012966

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.0588
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0732
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.538
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0.599
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0.946
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0212
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0934
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0613
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0.111
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0143
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.749
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.157
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.199
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.00427
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.059
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.0063
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.656
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.111
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0.0588
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12839

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.57561e-6
MA0003.1	MA0003.1	0.208
MA0004.1	MA0004.1	0.507
MA0006.1	MA0006.1	0.201
MA0007.1	MA0007.1	0.298
MA0009.1	MA0009.1	0.211
MA0014.1	MA0014.1	0.984
MA0017.1	MA0017.1	0.00422
MA0018.2	MA0018.2	9.33916e-4
MA0019.1	MA0019.1	0.796
MA0024.1	MA0024.1	4.91116e-7
MA0025.1	MA0025.1	0.201
MA0027.1	MA0027.1	0.511
MA0028.1	MA0028.1	0.131
MA0029.1	MA0029.1	0.655
MA0030.1	MA0030.1	0.26
MA0031.1	MA0031.1	0.912
MA0035.2	MA0035.2	0.435
MA0038.1	MA0038.1	0.0105
MA0039.2	MA0039.2	0.617
MA0040.1	MA0040.1	0.859
MA0041.1	MA0041.1	0.319
MA0042.1	MA0042.1	0.24
MA0043.1	MA0043.1	0.144
MA0046.1	MA0046.1	0.711
MA0047.2	MA0047.2	0.218
MA0048.1	MA0048.1	0.392
MA0050.1	MA0050.1	4.82299e-12
MA0051.1	MA0051.1	2.14574e-5
MA0052.1	MA0052.1	0.179
MA0055.1	MA0055.1	0.909
MA0057.1	MA0057.1	0.163
MA0058.1	MA0058.1	0.482
MA0059.1	MA0059.1	0.58
MA0060.1	MA0060.1	2.04764e-21
MA0061.1	MA0061.1	0.00349
MA0062.2	MA0062.2	0.0444
MA0065.2	MA0065.2	0.00412
MA0066.1	MA0066.1	0.0929
MA0067.1	MA0067.1	0.6
MA0068.1	MA0068.1	0.0612
MA0069.1	MA0069.1	0.0921
MA0070.1	MA0070.1	7.85497e-4
MA0071.1	MA0071.1	0.341
MA0072.1	MA0072.1	0.699
MA0073.1	MA0073.1	0.593
MA0074.1	MA0074.1	0.16
MA0076.1	MA0076.1	0.0126
MA0077.1	MA0077.1	2.25282e-4
MA0078.1	MA0078.1	0.481
MA0079.2	MA0079.2	0.85
MA0080.2	MA0080.2	3.96338e-11
MA0081.1	MA0081.1	0.0388
MA0083.1	MA0083.1	5.09838e-4
MA0084.1	MA0084.1	0.594
MA0087.1	MA0087.1	0.822
MA0088.1	MA0088.1	0.768
MA0090.1	MA0090.1	0.00124
MA0091.1	MA0091.1	0.436
MA0092.1	MA0092.1	0.24
MA0093.1	MA0093.1	0.408
MA0099.2	MA0099.2	3.13198e-14
MA0100.1	MA0100.1	0.264
MA0101.1	MA0101.1	0.0083
MA0102.2	MA0102.2	0.0395
MA0103.1	MA0103.1	0.061
MA0104.2	MA0104.2	0.0897
MA0105.1	MA0105.1	0.00286
MA0106.1	MA0106.1	0.278
MA0107.1	MA0107.1	0.0029
MA0108.2	MA0108.2	0.934
MA0111.1	MA0111.1	0.528
MA0112.2	MA0112.2	1.13425e-4
MA0113.1	MA0113.1	0.00569
MA0114.1	MA0114.1	0.0268
MA0115.1	MA0115.1	0.86
MA0116.1	MA0116.1	0.0139
MA0117.1	MA0117.1	0.953
MA0119.1	MA0119.1	0.188
MA0122.1	MA0122.1	0.428
MA0124.1	MA0124.1	0.556
MA0125.1	MA0125.1	0.0159
MA0131.1	MA0131.1	0.519
MA0135.1	MA0135.1	0.249
MA0136.1	MA0136.1	7.06913e-7
MA0137.2	MA0137.2	0.0242
MA0138.2	MA0138.2	0.311
MA0139.1	MA0139.1	0.324
MA0140.1	MA0140.1	0.0855
MA0141.1	MA0141.1	0.0331
MA0142.1	MA0142.1	0.36
MA0143.1	MA0143.1	0.819
MA0144.1	MA0144.1	0.0119
MA0145.1	MA0145.1	0.0938
MA0146.1	MA0146.1	0.0934
MA0147.1	MA0147.1	0.185
MA0148.1	MA0148.1	0.228
MA0149.1	MA0149.1	0.0115
MA0150.1	MA0150.1	1.90783e-4
MA0152.1	MA0152.1	0.648
MA0153.1	MA0153.1	0.105
MA0154.1	MA0154.1	0.05
MA0155.1	MA0155.1	0.345
MA0156.1	MA0156.1	0.013
MA0157.1	MA0157.1	0.539
MA0159.1	MA0159.1	0.0188
MA0160.1	MA0160.1	0.0464
MA0162.1	MA0162.1	0.215
MA0163.1	MA0163.1	6.39084e-4
MA0164.1	MA0164.1	0.631
MA0258.1	MA0258.1	0.0194
MA0259.1	MA0259.1	0.285

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12839

Novel motif	Logo	P-value
1	1	0.0853
10	10	0.125
100	100	0.704
101	101	0.268
102	102	0.583
103	103	0.086
104	104	0.532
105	105	0.54
106	106	0.00178
107	107	0.0433
108	108	0.657
109	109	0.0337
11	11	0.0651
110	110	0.382
111	111	0.157
112	112	0.124
113	113	0.708
114	114	0.0162
115	115	0.531
116	116	0.416
117	117	0.197
118	118	0.37
119	119	0.269
12	12	0.856
120	120	0.778
121	121	0.655
122	122	0.495
123	123	0.713
124	124	0.448
125	125	0.913
126	126	0.187
127	127	0.198
128	128	0.0144
129	129	0.334
13	13	0.197
130	130	0.569
131	131	0.174
132	132	0.811
133	133	0.606
134	134	0.792
135	135	0.07
136	136	0.899
137	137	0.31
138	138	0.212
139	139	0.126
14	14	0.662
140	140	0.272
141	141	0.692
142	142	0.276
143	143	0.0142
144	144	0.577
145	145	0.117
146	146	0.966
147	147	0.788
148	148	0.0545
149	149	0.0184
15	15	0.167
150	150	0.626
151	151	0.333
152	152	0.0166
153	153	0.206
154	154	0.797
155	155	0.913
156	156	0.984
157	157	0.35
158	158	0.813
159	159	0.834
16	16	0.104
160	160	0.379
161	161	0.493
162	162	0.885
163	163	0.238
164	164	0.123
165	165	0.0855
166	166	0.622
167	167	0.352
168	168	0.0499
169	169	0.00953
17	17	0.21
18	18	0.227
19	19	0.0506
2	2	0.412
20	20	0.906
21	21	0.0928
22	22	0.0882
23	23	0.00635
24	24	0.293
25	25	0.868
26	26	0.244
27	27	0.489
28	28	0.888
29	29	0.452
3	3	0.0308
30	30	0.747
31	31	0.375
32	32	0.00255
33	33	0.412
34	34	0.408
35	35	0.641
36	36	0.652
37	37	0.0472
38	38	0.44
39	39	0.244
4	4	0.717
40	40	0.48
41	41	0.331
42	42	0.257
43	43	0.106
44	44	0.332
45	45	0.382
46	46	0.238
47	47	0.363
48	48	0.269
49	49	0.194
5	5	0.0978
50	50	0.216
51	51	0.4
52	52	0.156
53	53	0.448
54	54	0.173
55	55	0.0194
56	56	0.559
57	57	0.548
58	58	0.345
59	59	0.0663
6	6	0.439
60	60	0.013
61	61	0.366
62	62	0.114
63	63	0.0812
64	64	0.753
65	65	0.173
66	66	0.466
67	67	0.934
68	68	0.819
69	69	0.873
7	7	0.391
70	70	0.0286
71	71	0.075
72	72	0.25
73	73	0.0134
74	74	0.247
75	75	0.0808
76	76	0.577
77	77	0.109
78	78	0.263
79	79	0.0522
8	8	0.167
80	80	0.064
81	81	0.256
82	82	0.0853
83	83	0.547
84	84	0.552
85	85	0.00701
86	86	0.291
87	87	0.429
88	88	0.873
89	89	0.0679
9	9	0.339
90	90	0.0717
91	91	0.126
92	92	0.0444
93	93	0.918
94	94	0.0924
95	95	0.131
96	96	0.162
97	97	0.87
98	98	0.222
99	99	0.646

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12839

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
CL:0000242 Merkel cell
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100297 carcinoma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002319 (neural cell)
0000095 (neuron associated cell)
0000325 (stuff accumulating cell)
0000240 (stratified squamous epithelial cell)
0000311 (keratin accumulating cell)
0000079 (stratified epithelial cell)
0000123 (neuron associated cell (sensu Vertebrata))
0000312 (keratinocyte)
0000237 (keratinizing barrier epithelial cell)
0000362 (epidermal cell)
0002159 (general ecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000242 (Merkel cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001003 (skin epidermis)
0002097 (skin of body)
0002199 (integument)
0000483 (epithelium)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003102 (surface structure)
0007376 (outer epithelium)
0010371 (ecto-epithelium)
0010317 (germ layer / neural crest derived structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000133 (neurectodermal cell)
CL:0000357 (stratified epithelial stem cell)
CL:0000114 (surface ectodermal cell)
CL:0000221 (ectodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000119,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000483,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0001003,UBERON:0001062,UBERON:0002050,UBERON:0002097,UBERON:0002199,UBERON:0002416,UBERON:0002532,UBERON:0003102,UBERON:0004121,UBERON:0005423,UBERON:0007376,UBERON:0007383
+|DRA_sample_Accession=CAGE@SAMD00005928
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000035,CL:0000036,CL:0000063,CL:0000066,CL:0000076,CL:0000079,CL:0000095,CL:0000114,CL:0000123,CL:0000133,CL:0000144,CL:0000219,CL:0000220,CL:0000221,CL:0000237,CL:0000240,CL:0000242,CL:0000255,CL:0000311,CL:0000312,CL:0000325,CL:0000333,CL:0000357,CL:0000362,CL:0000548,CL:0000723,CL:0002077,CL:0002159,CL:0002319,CL:0002321,CL:0002371
+|accession_numbers=CAGE;DRX007934;DRR008806;DRZ000231;DRZ001616;DRZ011581;DRZ012966
-|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:305,DOID:4
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0000483,UBERON:0000479,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0010317,UBERON:0002416
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002319,CL:0000095,CL:0000325,CL:0000240,CL:0000311,CL:0000079,CL:0000123,CL:0000312,CL:0000237,CL:0000362,CL:0002159,CL:0000255,CL:0002077,CL:0000242
+|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr20:20348740..20348757,+!p1@INSM1!2.67!464.04!INSM1;;chr10:50604121..50604142,-!p1@DRGX!2.42!262.89!DRGX;;chr1:160336851..160336868,+!p1@NHLH1!2.40!252.31!NHLH1;;chr2:239148671..239148686,-!p1@HES6!2.29!682.00!HES6;;chr13:72441315..72441454,-!p1@DACH1!2.27!360.71!DACH1;;chr4:94749897..94749909,+!p1@ATOH1!2.27!183.33!ATOH1;;chr5:145718398..145718410,+!p1@POU4F3!2.15!139.56!POU4F3;;chr3:181429704..181429722,+!p1@SOX2!2.14!138.25!SOX2;;chrX:85403445..85403479,+!p2@DACH2!2.03!106.95!DACH2;;chr5:50679228..50679288,+!p1@ISL1!2.00!98.26!ISL1;;chr13:79177674..79177701,-!p1@POU4F1!1.93!85.07!POU4F1;;chr7:96654133..96654150,-!p1@DLX5!1.93!83.33!DLX5;;chr17:37764128..37764258,-!p1@NEUROD2!1.91!80.29!NEUROD2;;chr5:170736243..170736279,+!p1@TLX3!1.90!78.69!TLX3;;chr5:2751762..2751784,-!p1@IRX2!1.84!68.55!IRX2;;chr7:156803329..156803362,-!p1@MNX1!1.84!67.82!MNX1;;chr4:113437332..113437337,-!p1@NEUROG2!1.83!66.66!NEUROG2;;chr12:54785074..54785122,-!p2@ZNF385A!1.82!97.97!ZNF385A;;chr12:54785054..54785072,-!p4@ZNF385A!1.82!72.75!ZNF385A;;chr13:72441074..72441172,-!p2@DACH1!1.78!59.85!DACH1;;chr6:10415484..10415508,-!p3@TFAP2A!1.77!57.39!TFAP2A;;chr9:77112244..77112262,+!p1@RORB!1.75!61.16!RORB;;chr1:214161272..214161322,+!p1@PROX1!1.74!74.05!PROX1;;chr3:181429741..181429767,+!p2@SOX2!1.74!54.20!SOX2;;chr1:216896752..216896778,-!p1@ESRRG!1.71!50.87!ESRRG;;chr4:81118647..81118666,+!p1@PRDM8!1.69!63.19!PRDM8;;chr9:139094988..139095012,-!p1@LHX3!1.67!46.08!LHX3;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.67!45.94!PEG3;;chr1:3607228..3607250,+!p8@TP73!1.66!44.64!TP73;;chr8:53166899..53166914,-!p3@ST18!1.66!44.35!ST18;;chr1:3569072..3569093,+!p1@TP73!1.65!43.48!TP73;;chr1:92949331..92949377,-!p2@GFI1!1.65!43.33!GFI1;;chr2:5832508..5832524,+!p1@SOX11!1.64!42.75!SOX11;;chr11:63684602..63684664,-!p1@RCOR2!1.63!80.14!RCOR2;;chr6:50786591..50786614,+!p1@TFAP2B!1.61!39.85!TFAP2B;;chr15:57511609..57511651,+!p2@TCF12!1.60!63.91!TCF12;;chr1:41827095..41827155,+!p1@FOXO6!1.59!50.87!FOXO6;;chr8:65492915..65492932,+!p1@BHLHE22!1.59!37.82!BHLHE22;;chr7:1272522..1272537,+!p2@UNCX!1.59!37.68!UNCX;;chr17:48072574..48072597,-!p1@DLX3!1.58!37.39!DLX3;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.58!37.10!POU3F3;;chr6:10412600..10412637,-!p1@TFAP2A!1.56!58.26!TFAP2A;;chr1:10856665..10856683,-!p4@CASZ1!1.55!34.49!CASZ1;;chr2:2334997..2335053,-!p1@MYT1L!1.54!33.48!MYT1L;;chr1:197886461..197886558,+!p1@LHX9!1.53!33.04!LHX9;;chr4:111544219..111544240,-!p1@PITX2!1.52!31.88!PITX2;;chr6:10415276..10415341,-!p2@TFAP2A!1.49!36.67!TFAP2A;;chr1:6479968..6479986,-!p1@HES2!1.49!29.56!HES2;;chr15:76629123..76629151,+!p1@ISL2!1.48!32.17!ISL2;;chr5:145718596..145718607,+!p2@POU4F3!1.47!28.69!POU4F3;;chr12:103351444..103351461,+!p1@ASCL1!1.47!28.55!ASCL1;;chr18:55102598..55102623,+!p1@ONECUT2!1.47!28.26!ONECUT2;;chr1:10856639..10856662,-!p2@CASZ1!1.47!28.26!CASZ1;;chrX:131624056..131624069,-!p2@MBNL3!1.44!35.94!MBNL3;;chr17:46703687..46703740,-!p1@HOXB9!1.44!26.38!HOXB9;;chr2:95963052..95963106,+!p1@KCNIP3!1.43!26.09!KCNIP3;;chr1:2461692..2461710,-!p1@HES5!1.41!24.64!HES5;;chr6:19837592..19837621,+!p1@ID4!1.39!138.69!ID4;;chr18:55102628..55102646,+!p2@ONECUT2!1.39!23.77!ONECUT2;;chr9:139096968..139096979,-!p2@LHX3!1.39!23.62!LHX3;;chr11:20182017..20182023,-!p1@DBX1!1.36!22.17!DBX1;;chr1:23857698..23857733,-!p1@E2F2!1.35!38.69!E2F2;;chr1:151032922..151032951,+!p2@MLLT11!1.34!34.20!MLLT11;;chr2:219849012..219849065,-!p1@FEV!1.34!20.72!FEV;;chr6:10412392..10412409,-!p4@TFAP2A!1.30!21.74!TFAP2A;;chr5:170736216..170736238,+!p2@TLX3!1.28!18.26!TLX3;;chr7:96634878..96634900,+!p2@DLX6!1.28!18.26!DLX6;;chr1:160336929..160336938,+!p2@NHLH1!1.28!18.26!NHLH1;;chr7:27205136..27205164,-!p1@HOXA9!1.27!17.68!HOXA9;;chr7:1272500..1272513,+!p1@UNCX!1.27!17.54!UNCX;;chr6:50789717..50789729,+!p4@TFAP2B!1.26!17.39!TFAP2B;;chr10:131762504..131762555,-!p1@EBF3!1.26!17.39!EBF3;;chr7:96635178..96635181,+!p1@DLX6!1.25!16.96!DLX6;;chr3:40547564..40547616,+!p1@ZNF620!1.24!23.33!ZNF620;;chr18:6414884..6414942,-!p1@L3MBTL4!1.24!20.72!L3MBTL4;;chr5:2751785..2751808,-!p2@IRX2!1.23!15.94!IRX2;;chr13:72441506..72441562,-!p3@DACH1!1.23!15.94!DACH1;;chr1:216896780..216896800,-!p2@ESRRG!1.22!15.65!ESRRG;;chr2:5832493..5832507,+!p2@SOX11!1.22!15.65!SOX11;;chr17:46622205..46622218,-!p3@HOXB2!1.19!16.96!HOXB2;;chr11:111249993..111250006,-!p1@POU2AF1!1.19!14.49!POU2AF1;;chr3:157824202..157824211,-!p3@SHOX2!1.19!14.35!SHOX2;;chrX:84498989..84499003,+!p1@ZNF711!1.18!19.27!ZNF711;;chr9:96717629..96717644,-!p1@BARX1!1.18!14.20!BARX1;;chrX:84499081..84499115,+!p2@ZNF711!1.17!20.29!ZNF711;;chr2:176972000..176972025,+!p4@HOXD11!1.17!13.77!HOXD11;;chr1:10754477..10754517,-!p1@CASZ1!1.16!22.46!CASZ1;;chr15:68115672..68115691,+!p1@SKOR1!1.16!13.33!SKOR1;;chr18:53089453..53089482,-!p11@TCF4!1.16!13.33!TCF4;;chr17:80797886..80797906,-!p1@ZNF750!1.15!13.19!ZNF750;;chr9:126774018..126774055,+!p1@LHX2!1.15!13.04!LHX2;;chr2:2335109..2335134,-!p2@MYT1L!1.15!13.04!MYT1L;;chr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+|ffid_belonging_in_development=CL:0000133,CL:0000357,CL:0000114,CL:0000221
 |fonse_cell_line=FF:0101120
 |fonse_cell_line_closure=FF:0101120
@@ Line 35: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/merkel%2520cell%2520carcinoma%2520cell%2520line%253aMS-1.CNhs12839.10844-111E7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/merkel%2520cell%2520carcinoma%2520cell%2520line%253aMS-1.CNhs12839.10844-111E7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/merkel%2520cell%2520carcinoma%2520cell%2520line%253aMS-1.CNhs12839.10844-111E7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/merkel%2520cell%2520carcinoma%2520cell%2520line%253aMS-1.CNhs12839.10844-111E7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/merkel%2520cell%2520carcinoma%2520cell%2520line%253aMS-1.CNhs12839.10844-111E7.hg38.nobarcode.ctss.bed.gz
 |id=FF:10844-111E7
-|is_a=CL:0000242;;EFO:0002091;;FF:0000003;;FF:0000210;;FF:0100297
+|is_a=CL:0000242;;EFO:0002091;;FF:0000210;;FF:0100297
+|is_obsolete=
+|library_id=CNhs12839
+|library_id_phase_based=2:CNhs12839
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10844
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10844
 |name=merkel cell carcinoma cell line:MS-1
 |namespace=FANTOM5
@@ Line 42: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12839,LSID973,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
+|repeat_enrich_byfamily=0,0,0.0552682668253555,0,0,0,0,-0.0497814964356746,0,-0.133353085922057,0.525270730552222,0,0,0,0,0,0,0,0,0.156780194442811,0,0,0.110536533650711,0,0.209213984823722,0,0,0,0.0992851254171535,0,0.10061235456625,0,0,0.518137652279524,0,0,0,0,0,0,0,0,0,0,0,0,0.0537692427908373,0.156780194442811,0,0,0,0,0,0,0,0.00517274492322435,0,0,0,0,0,0.00499419103924756,0.0587755320721174,0.340607970464489,0,0,0.10122662362121,0,0,0,0,0,0,0,0,0.0587755320721174,0,0,0,0,0,0,0,0,0,0.0293877660360587,0,0,0,0,0.0472836963971567,0.0686489036992597,0.0552682668253555,0,0,0.260325729508765,0.11383833364163,0,0,0.0293877660360587,0,0.012501182413005,0.359085877836145,0,0,0,0,0,0,0.110536533650711,0,0,0,0.0587755320721174,0,0,0,0,0,0,0.0219712445293401,0.156780194442811,0,0,0,-0.0850570879155377,0,0,0.167922246295693,0,0,0
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 |rna_box=111
 |rna_catalog_number=
@@ Line 54: / Line 75: @@
 |rna_rin=
 |rna_sample_type=total RNA
-|rna_tube_id=111E7
+|rna_tube_id=1.11E+09
 |rna_weight_ug=8.88165
 |sample_age=unknown
+|sample_category=cell lines
 |sample_cell_catalog=9111802
 |sample_cell_line=MS-1
@@ Line 69: / Line 91: @@
 |sample_ethnicity=unknown
 |sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.42232391687662e-304!GO:0043226;organelle;6.88493266351785e-275!GO:0043229;intracellular organelle;2.38778402061046e-274!GO:0043231;intracellular membrane-bound organelle;6.29521154315307e-270!GO:0043227;membrane-bound organelle;1.1126426920878e-269!GO:0005634;nucleus;8.97829107531225e-168!GO:0044422;organelle part;2.10283849634498e-159!GO:0044446;intracellular organelle part;1.9279037908986e-158!GO:0005737;cytoplasm;2.04096152916797e-135!GO:0044237;cellular metabolic process;6.75980993136182e-114!GO:0043170;macromolecule metabolic process;8.1938830640438e-112!GO:0044238;primary metabolic process;1.83915585851213e-111!GO:0032991;macromolecular complex;2.2047255190177e-108!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.78037459421321e-103!GO:0043283;biopolymer metabolic process;1.24976485266656e-96!GO:0010467;gene expression;3.39162574632171e-95!GO:0044428;nuclear part;3.8510841100519e-95!GO:0044444;cytoplasmic part;7.81749622357827e-89!GO:0030529;ribonucleoprotein complex;2.38651047822261e-86!GO:0003723;RNA binding;7.87335832479666e-79!GO:0043233;organelle lumen;2.46609905426969e-77!GO:0031974;membrane-enclosed lumen;2.46609905426969e-77!GO:0003676;nucleic acid binding;2.91745253634214e-76!GO:0016070;RNA metabolic process;5.52309899351765e-65!GO:0006396;RNA processing;3.45246732437343e-59!GO:0005515;protein binding;2.28215623182594e-58!GO:0043234;protein complex;5.39208912853924e-56!GO:0016043;cellular component organization and biogenesis;5.87165608796644e-56!GO:0031981;nuclear lumen;3.4852226277377e-54!GO:0005739;mitochondrion;3.83552740671415e-54!GO:0006996;organelle organization and biogenesis;4.89089572227346e-48!GO:0006259;DNA metabolic process;7.15278478044381e-47!GO:0016071;mRNA metabolic process;1.67607372157531e-46!GO:0043228;non-membrane-bound organelle;2.08724082660346e-46!GO:0043232;intracellular non-membrane-bound organelle;2.08724082660346e-46!GO:0005840;ribosome;4.06700660089486e-46!GO:0008380;RNA splicing;5.79382984576126e-44!GO:0006397;mRNA processing;5.13033241932201e-41!GO:0031090;organelle membrane;9.66971957320859e-40!GO:0033036;macromolecule localization;1.80264635859046e-38!GO:0003735;structural constituent of ribosome;1.81684703939696e-38!GO:0031967;organelle envelope;2.31199873154022e-38!GO:0044429;mitochondrial part;2.72545708777787e-38!GO:0031975;envelope;3.36045042109487e-38!GO:0015031;protein transport;4.58469054224418e-38!GO:0006412;translation;2.31217543130691e-37!GO:0007049;cell cycle;9.44705356498717e-37!GO:0033279;ribosomal subunit;4.51603790540132e-35!GO:0005654;nucleoplasm;4.08990838044372e-34!GO:0008104;protein localization;9.518241053147e-34!GO:0046907;intracellular transport;1.12389598379761e-33!GO:0045184;establishment of protein localization;2.91294695154502e-33!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.59673429931243e-31!GO:0005694;chromosome;1.38292676414432e-30!GO:0005681;spliceosome;2.44802676706085e-30!GO:0065003;macromolecular complex assembly;4.43772323724356e-30!GO:0022402;cell cycle process;5.96104031249737e-29!GO:0000166;nucleotide binding;8.73836659296577e-29!GO:0044451;nucleoplasm part;2.09871266688938e-28!GO:0009059;macromolecule biosynthetic process;3.02200775831982e-28!GO:0000278;mitotic cell cycle;3.67800511879777e-28!GO:0051649;establishment of cellular localization;4.58359575007684e-28!GO:0019538;protein metabolic process;6.14320066311274e-28!GO:0051641;cellular localization;2.9337823133768e-27!GO:0022607;cellular component assembly;3.01968205788653e-27!GO:0009058;biosynthetic process;3.42637890555703e-27!GO:0006350;transcription;3.83724343028903e-27!GO:0051276;chromosome organization and biogenesis;1.12944819959185e-26!GO:0044249;cellular biosynthetic process;1.43801214844543e-26!GO:0044267;cellular protein metabolic process;1.63871124351616e-26!GO:0006974;response to DNA damage stimulus;1.65673781151688e-26!GO:0019222;regulation of metabolic process;1.29100913487713e-25!GO:0044260;cellular macromolecule metabolic process;1.65808583278931e-25!GO:0044427;chromosomal part;1.6888710659053e-25!GO:0006886;intracellular protein transport;2.19402225784924e-25!GO:0022403;cell cycle phase;4.38236123840402e-25!GO:0019866;organelle inner membrane;1.07298643787061e-24!GO:0006281;DNA repair;1.21758053602624e-24!GO:0005740;mitochondrial envelope;5.98423416493055e-24!GO:0032774;RNA biosynthetic process;6.13688399199701e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.42596894455122e-24!GO:0005829;cytosol;1.00669802786502e-23!GO:0006351;transcription, DNA-dependent;1.00778206055967e-23!GO:0000087;M phase of mitotic cell cycle;1.88547725029653e-23!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.03151135184536e-23!GO:0007067;mitosis;6.38155987321072e-23!GO:0006119;oxidative phosphorylation;7.12225753652512e-23!GO:0031323;regulation of cellular metabolic process;1.0025324455578e-22!GO:0010468;regulation of gene expression;1.04484619729577e-22!GO:0016462;pyrophosphatase activity;1.11842641924798e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.64146002659847e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;1.8911003902214e-22!GO:0017111;nucleoside-triphosphatase activity;1.90606563163943e-22!GO:0031966;mitochondrial membrane;2.01376205234061e-22!GO:0005743;mitochondrial inner membrane;3.17767926579501e-22!GO:0006325;establishment and/or maintenance of chromatin architecture;9.76363888839655e-22!GO:0003677;DNA binding;1.10241468905626e-21!GO:0044455;mitochondrial membrane part;1.72155877992994e-21!GO:0045449;regulation of transcription;2.29401060633165e-21!GO:0000279;M phase;2.39169358508341e-21!GO:0006323;DNA packaging;8.46266997114959e-21!GO:0044445;cytosolic part;2.73252034616055e-20!GO:0005730;nucleolus;4.20200644878766e-20!GO:0006355;regulation of transcription, DNA-dependent;5.26487248666361e-20!GO:0032553;ribonucleotide binding;1.60191958834008e-19!GO:0032555;purine ribonucleotide binding;1.60191958834008e-19!GO:0050794;regulation of cellular process;3.70163818620356e-19!GO:0051301;cell division;6.70126517263446e-19!GO:0006260;DNA replication;9.36031825958134e-19!GO:0005524;ATP binding;1.37375619112001e-18!GO:0015935;small ribosomal subunit;2.20963884791166e-18!GO:0006512;ubiquitin cycle;2.63241626662584e-18!GO:0022618;protein-RNA complex assembly;6.31163455792876e-18!GO:0017076;purine nucleotide binding;7.04825211479492e-18!GO:0015934;large ribosomal subunit;7.07499288807601e-18!GO:0032559;adenyl ribonucleotide binding;8.68139599666726e-18!GO:0031980;mitochondrial lumen;1.65840996058339e-17!GO:0005759;mitochondrial matrix;1.65840996058339e-17!GO:0005746;mitochondrial respiratory chain;2.1883679584857e-17!GO:0015630;microtubule cytoskeleton;4.25933342292515e-17!GO:0008134;transcription factor binding;9.92903213600195e-17!GO:0016874;ligase activity;1.20331513038591e-16!GO:0031965;nuclear membrane;1.22149936878658e-16!GO:0012505;endomembrane system;1.78639459058743e-16!GO:0008135;translation factor activity, nucleic acid binding;1.8101404748957e-16!GO:0050136;NADH dehydrogenase (quinone) activity;3.94637586052227e-16!GO:0003954;NADH dehydrogenase activity;3.94637586052227e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.94637586052227e-16!GO:0009719;response to endogenous stimulus;4.73533704703189e-16!GO:0030554;adenyl nucleotide binding;6.53351270125453e-16!GO:0016887;ATPase activity;8.42248622831086e-16!GO:0000398;nuclear mRNA splicing, via spliceosome;1.91384197474762e-15!GO:0000375;RNA splicing, via transesterification reactions;1.91384197474762e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.91384197474762e-15!GO:0005635;nuclear envelope;1.99787858993122e-15!GO:0042623;ATPase activity, coupled;4.28752123652444e-15!GO:0006457;protein folding;4.75739047294674e-15!GO:0016604;nuclear body;5.46025011139274e-15!GO:0044453;nuclear membrane part;1.15852492684731e-14!GO:0050789;regulation of biological process;1.49190345333145e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;1.55291784050816e-14!GO:0019941;modification-dependent protein catabolic process;1.82183479909455e-14!GO:0043632;modification-dependent macromolecule catabolic process;1.82183479909455e-14!GO:0006511;ubiquitin-dependent protein catabolic process;2.40668355115289e-14!GO:0005761;mitochondrial ribosome;2.70307324446417e-14!GO:0000313;organellar ribosome;2.70307324446417e-14!GO:0000785;chromatin;2.73666780106343e-14!GO:0042254;ribosome biogenesis and assembly;3.30381129901561e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.32508257049917e-14!GO:0006333;chromatin assembly or disassembly;3.37207282948299e-14!GO:0044257;cellular protein catabolic process;4.6034052898065e-14!GO:0030964;NADH dehydrogenase complex (quinone);6.31071508503487e-14!GO:0045271;respiratory chain complex I;6.31071508503487e-14!GO:0005747;mitochondrial respiratory chain complex I;6.31071508503487e-14!GO:0005643;nuclear pore;8.42910587736611e-14!GO:0042775;organelle ATP synthesis coupled electron transport;9.47168393584101e-14!GO:0042773;ATP synthesis coupled electron transport;9.47168393584101e-14!GO:0016568;chromatin modification;1.00355724797163e-13!GO:0044265;cellular macromolecule catabolic process;1.35752497108134e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.16828389502184e-13!GO:0000502;proteasome complex (sensu Eukaryota);3.04114198865006e-13!GO:0006403;RNA localization;4.10478465844841e-13!GO:0006605;protein targeting;4.75904748249582e-13!GO:0050657;nucleic acid transport;5.46669800944479e-13!GO:0051236;establishment of RNA localization;5.46669800944479e-13!GO:0050658;RNA transport;5.46669800944479e-13!GO:0065004;protein-DNA complex assembly;6.06877069377194e-13!GO:0004386;helicase activity;6.33972880964609e-13!GO:0016607;nuclear speck;9.15085498240473e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.47327498550752e-12!GO:0006366;transcription from RNA polymerase II promoter;1.48063274314161e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.75351221868533e-12!GO:0043285;biopolymer catabolic process;3.34750630538258e-12!GO:0051082;unfolded protein binding;4.47637134556112e-12!GO:0051726;regulation of cell cycle;6.1621946896305e-12!GO:0008026;ATP-dependent helicase activity;6.17001416343389e-12!GO:0043412;biopolymer modification;7.98482271799176e-12!GO:0003743;translation initiation factor activity;9.32570211020511e-12!GO:0000074;regulation of progression through cell cycle;1.70782474477933e-11!GO:0048770;pigment granule;2.30036166909891e-11!GO:0042470;melanosome;2.30036166909891e-11!GO:0005794;Golgi apparatus;2.55818813970635e-11!GO:0008565;protein transporter activity;3.67619448090602e-11!GO:0051028;mRNA transport;5.94545582049381e-11!GO:0030163;protein catabolic process;6.32861892198464e-11!GO:0006399;tRNA metabolic process;6.45545417329368e-11!GO:0006413;translational initiation;6.71166065585475e-11!GO:0016192;vesicle-mediated transport;9.57488582041754e-11!GO:0009057;macromolecule catabolic process;1.3384187471534e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.73190969251034e-10!GO:0046930;pore complex;1.85283012416987e-10!GO:0065002;intracellular protein transport across a membrane;2.15083641344675e-10!GO:0003712;transcription cofactor activity;2.42998086537161e-10!GO:0006261;DNA-dependent DNA replication;2.48553412666725e-10!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.51764500592103e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.62166282872905e-10!GO:0006913;nucleocytoplasmic transport;2.69307320407937e-10!GO:0006446;regulation of translational initiation;2.73270489314924e-10!GO:0019829;cation-transporting ATPase activity;2.73270489314924e-10!GO:0005874;microtubule;2.94380577546081e-10!GO:0000775;chromosome, pericentric region;3.55145436977056e-10!GO:0006464;protein modification process;3.5979378492829e-10!GO:0005819;spindle;4.07800941028563e-10!GO:0043566;structure-specific DNA binding;4.82748257869232e-10!GO:0006364;rRNA processing;5.17560701523622e-10!GO:0051169;nuclear transport;5.81660380627613e-10!GO:0006163;purine nucleotide metabolic process;7.05523161281394e-10!GO:0009259;ribonucleotide metabolic process;8.13484488544562e-10!GO:0016072;rRNA metabolic process;8.13484488544562e-10!GO:0030532;small nuclear ribonucleoprotein complex;1.22830296918054e-09!GO:0048193;Golgi vesicle transport;1.44216427532405e-09!GO:0051186;cofactor metabolic process;1.78430905290202e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.01264937515222e-09!GO:0007017;microtubule-based process;2.32737087776991e-09!GO:0003697;single-stranded DNA binding;2.44891487883849e-09!GO:0009141;nucleoside triphosphate metabolic process;4.59646782341983e-09!GO:0006334;nucleosome assembly;4.64373947008272e-09!GO:0043687;post-translational protein modification;4.70228723751788e-09!GO:0009199;ribonucleoside triphosphate metabolic process;4.76643293333032e-09!GO:0009150;purine ribonucleotide metabolic process;4.99425856074368e-09!GO:0031497;chromatin assembly;6.85914992891284e-09!GO:0006164;purine nucleotide biosynthetic process;7.69252809522031e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.19372369710031e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.35772741732615e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.35772741732615e-08!GO:0015986;ATP synthesis coupled proton transport;1.56418921562735e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.56418921562735e-08!GO:0009260;ribonucleotide biosynthetic process;1.711018521564e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.18920003918694e-08!GO:0046034;ATP metabolic process;2.25687567984769e-08!GO:0016779;nucleotidyltransferase activity;3.31068781713302e-08!GO:0009060;aerobic respiration;4.02266358956265e-08!GO:0008639;small protein conjugating enzyme activity;4.06563553373696e-08!GO:0051329;interphase of mitotic cell cycle;4.28145722470644e-08!GO:0017038;protein import;4.50346023466408e-08!GO:0003682;chromatin binding;4.64952889800717e-08!GO:0009152;purine ribonucleotide biosynthetic process;5.47060921121138e-08!GO:0009142;nucleoside triphosphate biosynthetic process;5.76625627025299e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.76625627025299e-08!GO:0000075;cell cycle checkpoint;5.82117465525987e-08!GO:0044248;cellular catabolic process;5.96150616170326e-08!GO:0008094;DNA-dependent ATPase activity;6.97466182720897e-08!GO:0004842;ubiquitin-protein ligase activity;7.27009494288585e-08!GO:0019787;small conjugating protein ligase activity;7.76109184510992e-08!GO:0009055;electron carrier activity;8.35518064213031e-08!GO:0051325;interphase;9.20677160444579e-08!GO:0006732;coenzyme metabolic process;9.84024694481255e-08!GO:0065007;biological regulation;1.32329509344784e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.61701132624965e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.61701132624965e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.61701132624965e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.63711156922569e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.63711156922569e-07!GO:0003899;DNA-directed RNA polymerase activity;2.23265994400353e-07!GO:0000245;spliceosome assembly;2.29275597362386e-07!GO:0044431;Golgi apparatus part;2.32254833850933e-07!GO:0006754;ATP biosynthetic process;2.36437301296924e-07!GO:0006753;nucleoside phosphate metabolic process;2.36437301296924e-07!GO:0007051;spindle organization and biogenesis;2.42778608097253e-07!GO:0005667;transcription factor complex;2.83081818232535e-07!GO:0043623;cellular protein complex assembly;3.07295493509972e-07!GO:0045333;cellular respiration;3.4965177443902e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;3.94191559321235e-07!GO:0016881;acid-amino acid ligase activity;5.47808794477903e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;5.49229942200943e-07!GO:0015078;hydrogen ion transmembrane transporter activity;6.02968171295658e-07!GO:0043038;amino acid activation;6.46264650431073e-07!GO:0006418;tRNA aminoacylation for protein translation;6.46264650431073e-07!GO:0043039;tRNA aminoacylation;6.46264650431073e-07!GO:0016469;proton-transporting two-sector ATPase complex;7.50218380115531e-07!GO:0045259;proton-transporting ATP synthase complex;7.54406066883874e-07!GO:0005657;replication fork;8.0527272283455e-07!GO:0003724;RNA helicase activity;8.0527272283455e-07!GO:0005813;centrosome;8.73923057774299e-07!GO:0007059;chromosome segregation;8.79471006073091e-07!GO:0032446;protein modification by small protein conjugation;1.06800405697088e-06!GO:0045045;secretory pathway;1.19498054374739e-06!GO:0031988;membrane-bound vesicle;1.24299082278518e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.36216763585076e-06!GO:0007010;cytoskeleton organization and biogenesis;1.49615162821261e-06!GO:0000226;microtubule cytoskeleton organization and biogenesis;1.77049921135909e-06!GO:0048475;coated membrane;1.85878673330511e-06!GO:0030117;membrane coat;1.85878673330511e-06!GO:0005815;microtubule organizing center;1.90002110785323e-06!GO:0006099;tricarboxylic acid cycle;2.00161480701965e-06!GO:0046356;acetyl-CoA catabolic process;2.00161480701965e-06!GO:0031982;vesicle;2.05115869381238e-06!GO:0008270;zinc ion binding;2.57854719748324e-06!GO:0031410;cytoplasmic vesicle;2.69154243353043e-06!GO:0016567;protein ubiquitination;2.74226227243696e-06!GO:0044432;endoplasmic reticulum part;2.80286864665146e-06!GO:0016564;transcription repressor activity;3.12537632414019e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.53268783978544e-06!GO:0006752;group transfer coenzyme metabolic process;4.23508361292683e-06!GO:0006084;acetyl-CoA metabolic process;4.87576452100227e-06!GO:0005783;endoplasmic reticulum;6.0808916058472e-06!GO:0015631;tubulin binding;6.23040298274207e-06!GO:0003729;mRNA binding;7.68247228249314e-06!GO:0006461;protein complex assembly;7.75151155510488e-06!GO:0007005;mitochondrion organization and biogenesis;8.40608275611576e-06!GO:0000151;ubiquitin ligase complex;9.32112534750979e-06!GO:0016363;nuclear matrix;1.03365124661162e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.05329758864068e-05!GO:0051188;cofactor biosynthetic process;1.08887027417372e-05!GO:0005762;mitochondrial large ribosomal subunit;1.35252220562773e-05!GO:0000315;organellar large ribosomal subunit;1.35252220562773e-05!GO:0006383;transcription from RNA polymerase III promoter;1.41783397294496e-05!GO:0016740;transferase activity;1.45130219966581e-05!GO:0000139;Golgi membrane;1.55224721499607e-05!GO:0051168;nuclear export;1.58957848624594e-05!GO:0031324;negative regulation of cellular metabolic process;2.15533063807651e-05!GO:0003714;transcription corepressor activity;2.15814202231253e-05!GO:0006613;cotranslational protein targeting to membrane;2.21325677036727e-05!GO:0000228;nuclear chromosome;2.25583350324438e-05!GO:0008186;RNA-dependent ATPase activity;2.36794471538336e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.93840812453099e-05!GO:0009892;negative regulation of metabolic process;3.05100100629904e-05!GO:0006793;phosphorus metabolic process;3.23958563308963e-05!GO:0006796;phosphate metabolic process;3.23958563308963e-05!GO:0000776;kinetochore;3.31805799053505e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;3.39133754052964e-05!GO:0009109;coenzyme catabolic process;3.43655823749505e-05!GO:0006302;double-strand break repair;3.50407120682181e-05!GO:0051170;nuclear import;4.06101537422624e-05!GO:0009117;nucleotide metabolic process;4.54311129870015e-05!GO:0000314;organellar small ribosomal subunit;5.52316807510854e-05!GO:0005763;mitochondrial small ribosomal subunit;5.52316807510854e-05!GO:0003713;transcription coactivator activity;5.62203417767921e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;5.79735793609225e-05!GO:0003924;GTPase activity;5.91569677545063e-05!GO:0008033;tRNA processing;5.94592635714913e-05!GO:0003678;DNA helicase activity;6.42344570751494e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.48013547483617e-05!GO:0030120;vesicle coat;6.48013547483617e-05!GO:0030662;coated vesicle membrane;6.48013547483617e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.76102564096506e-05!GO:0009108;coenzyme biosynthetic process;6.76102564096506e-05!GO:0007088;regulation of mitosis;6.76102564096506e-05!GO:0006606;protein import into nucleus;7.01628401803219e-05!GO:0004004;ATP-dependent RNA helicase activity;7.73080819956239e-05!GO:0006888;ER to Golgi vesicle-mediated transport;7.98501182549096e-05!GO:0000059;protein import into nucleus, docking;8.2535178296864e-05!GO:0005768;endosome;8.53754170486746e-05!GO:0005789;endoplasmic reticulum membrane;8.75085540853381e-05!GO:0003702;RNA polymerase II transcription factor activity;9.61019445693155e-05!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000152222297070806!GO:0007093;mitotic cell cycle checkpoint;0.000153241784739267!GO:0003690;double-stranded DNA binding;0.000160914561067195!GO:0005839;proteasome core complex (sensu Eukaryota);0.00016141396358379!GO:0044452;nucleolar part;0.000164049490901084!GO:0006352;transcription initiation;0.000170724741399659!GO:0016481;negative regulation of transcription;0.000173988123919727!GO:0051187;cofactor catabolic process;0.000175399085954529!GO:0006338;chromatin remodeling;0.000180394690872088!GO:0016310;phosphorylation;0.000187677335563467!GO:0003684;damaged DNA binding;0.000197268783120365!GO:0051427;hormone receptor binding;0.000199878900132902!GO:0048471;perinuclear region of cytoplasm;0.000216383585289775!GO:0004674;protein serine/threonine kinase activity;0.000231693654835082!GO:0008654;phospholipid biosynthetic process;0.000239925411742729!GO:0005876;spindle microtubule;0.000260209535210899!GO:0016741;transferase activity, transferring one-carbon groups;0.000266305021795658!GO:0005875;microtubule associated complex;0.000266916300324633!GO:0043681;protein import into mitochondrion;0.000271411857821027!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000282222474546797!GO:0005684;U2-dependent spliceosome;0.000283361055641653!GO:0008017;microtubule binding;0.00028355187033816!GO:0043021;ribonucleoprotein binding;0.000291957089704955!GO:0006612;protein targeting to membrane;0.000303946957449164!GO:0008168;methyltransferase activity;0.00031243295654634!GO:0045786;negative regulation of progression through cell cycle;0.000316406999881504!GO:0000786;nucleosome;0.00032350727882274!GO:0006414;translational elongation;0.00035184809740207!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00035951579263366!GO:0007006;mitochondrial membrane organization and biogenesis;0.000408381396000027!GO:0035257;nuclear hormone receptor binding;0.000419380733997304!GO:0006310;DNA recombination;0.000432469229711133!GO:0030118;clathrin coat;0.000529057340381781!GO:0016853;isomerase activity;0.000529137742653701!GO:0006626;protein targeting to mitochondrion;0.000532220998916741!GO:0006405;RNA export from nucleus;0.000539834275716084!GO:0031072;heat shock protein binding;0.00056143842332425!GO:0000792;heterochromatin;0.000573503039465452!GO:0004298;threonine endopeptidase activity;0.000573503039465452!GO:0005525;GTP binding;0.000573503039465452!GO:0007052;mitotic spindle organization and biogenesis;0.000592060958064396!GO:0044440;endosomal part;0.000659093556936879!GO:0010008;endosome membrane;0.000659093556936879!GO:0008250;oligosaccharyl transferase complex;0.000664727104032487!GO:0004576;oligosaccharyl transferase activity;0.000692170701788752!GO:0032508;DNA duplex unwinding;0.000698197010079001!GO:0032392;DNA geometric change;0.000698197010079001!GO:0046474;glycerophospholipid biosynthetic process;0.000768104340787762!GO:0015992;proton transport;0.000775783509355398!GO:0005798;Golgi-associated vesicle;0.00078942654718546!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000790831525771351!GO:0016563;transcription activator activity;0.000838952145437173!GO:0032940;secretion by cell;0.000840687816852733!GO:0003711;transcription elongation regulator activity;0.000843695444772846!GO:0006818;hydrogen transport;0.000843695444772846!GO:0046489;phosphoinositide biosynthetic process;0.000889504544881404!GO:0045454;cell redox homeostasis;0.000891702618929334!GO:0031124;mRNA 3'-end processing;0.000904820492107994!GO:0006378;mRNA polyadenylation;0.000950872749131781!GO:0005637;nuclear inner membrane;0.000979151013078171!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0010220492033679!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0010220492033679!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0010220492033679!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00104234713535011!GO:0006268;DNA unwinding during replication;0.00104571589385045!GO:0006839;mitochondrial transport;0.0011575219907128!GO:0046914;transition metal ion binding;0.0012272771909443!GO:0005905;coated pit;0.00125436054300749!GO:0030880;RNA polymerase complex;0.00127642222181069!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0012822465404499!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00130647978618!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00130647978618!GO:0007018;microtubule-based movement;0.00138074556928707!GO:0005793;ER-Golgi intermediate compartment;0.00138446982544588!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00140735626347324!GO:0015399;primary active transmembrane transporter activity;0.00140735626347324!GO:0032259;methylation;0.00154721863325508!GO:0008022;protein C-terminus binding;0.00154793229584897!GO:0003746;translation elongation factor activity;0.00154793229584897!GO:0046467;membrane lipid biosynthetic process;0.00161219661391517!GO:0016859;cis-trans isomerase activity;0.00164040823803059!GO:0043596;nuclear replication fork;0.00171712078384722!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0017774266950558!GO:0042393;histone binding;0.001781303801742!GO:0000082;G1/S transition of mitotic cell cycle;0.00184495286538428!GO:0030135;coated vesicle;0.00187440158472052!GO:0008276;protein methyltransferase activity;0.00191657703142581!GO:0004003;ATP-dependent DNA helicase activity;0.00191978639684357!GO:0051920;peroxiredoxin activity;0.00192228721803158!GO:0040029;regulation of gene expression, epigenetic;0.00193754499315882!GO:0044454;nuclear chromosome part;0.00195257038510727!GO:0000819;sister chromatid segregation;0.00204446180226572!GO:0004527;exonuclease activity;0.00206546243541628!GO:0051539;4 iron, 4 sulfur cluster binding;0.0022008638560816!GO:0009056;catabolic process;0.0022832753613944!GO:0048500;signal recognition particle;0.00233910630500704!GO:0031123;RNA 3'-end processing;0.00243337130202319!GO:0008312;7S RNA binding;0.00259354791371117!GO:0009165;nucleotide biosynthetic process;0.00261593102471434!GO:0000070;mitotic sister chromatid segregation;0.00281702207743584!GO:0006284;base-excision repair;0.00281843909796303!GO:0006611;protein export from nucleus;0.00287275690330449!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00293802785172027!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00293802785172027!GO:0000428;DNA-directed RNA polymerase complex;0.00293802785172027!GO:0000049;tRNA binding;0.00293802785172027!GO:0000086;G2/M transition of mitotic cell cycle;0.00308061044005099!GO:0012501;programmed cell death;0.00325613394842135!GO:0005048;signal sequence binding;0.0032639454990307!GO:0048487;beta-tubulin binding;0.00326741897377079!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00332105783537226!GO:0003730;mRNA 3'-UTR binding;0.0033564212895643!GO:0008139;nuclear localization sequence binding;0.00342500826580918!GO:0043414;biopolymer methylation;0.00350923190425224!GO:0045892;negative regulation of transcription, DNA-dependent;0.00357454354272814!GO:0051052;regulation of DNA metabolic process;0.00359363337403962!GO:0006915;apoptosis;0.00361209233370785!GO:0006401;RNA catabolic process;0.00376431393889303!GO:0018196;peptidyl-asparagine modification;0.00379857852876576!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00379857852876576!GO:0006595;polyamine metabolic process;0.00379857852876576!GO:0006402;mRNA catabolic process;0.00386657508501779!GO:0032561;guanyl ribonucleotide binding;0.00391088692899831!GO:0019001;guanyl nucleotide binding;0.00391088692899831!GO:0051087;chaperone binding;0.0039196991789234!GO:0006270;DNA replication initiation;0.00397816003797284!GO:0016251;general RNA polymerase II transcription factor activity;0.00411022061834516!GO:0019899;enzyme binding;0.00446872331224052!GO:0000118;histone deacetylase complex;0.00449972381261039!GO:0016126;sterol biosynthetic process;0.00471031819394423!GO:0006891;intra-Golgi vesicle-mediated transport;0.00481277822419711!GO:0043631;RNA polyadenylation;0.00543236805222271!GO:0030867;rough endoplasmic reticulum membrane;0.00570374426955022!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00571166758652886!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00613503003125621!GO:0045047;protein targeting to ER;0.00613503003125621!GO:0006607;NLS-bearing substrate import into nucleus;0.00657607339067561!GO:0000725;recombinational repair;0.00660677272560909!GO:0000724;double-strand break repair via homologous recombination;0.00660677272560909!GO:0000339;RNA cap binding;0.00700753350611951!GO:0005885;Arp2/3 protein complex;0.00701167726138224!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00708602672646673!GO:0005741;mitochondrial outer membrane;0.00708747980281626!GO:0048523;negative regulation of cellular process;0.00718237362644954!GO:0004860;protein kinase inhibitor activity;0.00736638034353426!GO:0000790;nuclear chromatin;0.00737497692139164!GO:0008180;signalosome;0.00770948506138874!GO:0030131;clathrin adaptor complex;0.00778565195133419!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0080899205959029!GO:0030521;androgen receptor signaling pathway;0.00816964264297881!GO:0030119;AP-type membrane coat adaptor complex;0.00850843823700827!GO:0000922;spindle pole;0.0086536697554581!GO:0005769;early endosome;0.00866720916857841!GO:0005832;chaperonin-containing T-complex;0.00867991341155424!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00872184455325963!GO:0051246;regulation of protein metabolic process;0.00925154851746747!GO:0005770;late endosome;0.00925176147894797!GO:0000793;condensed chromosome;0.00972635307612627!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00972635307612627!GO:0015002;heme-copper terminal oxidase activity;0.00972635307612627!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00972635307612627!GO:0004129;cytochrome-c oxidase activity;0.00972635307612627!GO:0005663;DNA replication factor C complex;0.0101436380099114!GO:0008287;protein serine/threonine phosphatase complex;0.0102985039449324!GO:0006505;GPI anchor metabolic process;0.0103474455059132!GO:0019867;outer membrane;0.0104546589933667!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0105870920632978!GO:0000152;nuclear ubiquitin ligase complex;0.0106751603453569!GO:0005669;transcription factor TFIID complex;0.0107851457694788!GO:0031970;organelle envelope lumen;0.0109562457885695!GO:0000178;exosome (RNase complex);0.0112412169033415!GO:0016585;chromatin remodeling complex;0.0114743116650417!GO:0004532;exoribonuclease activity;0.0114880080738502!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0114880080738502!GO:0043492;ATPase activity, coupled to movement of substances;0.0114880080738502!GO:0043601;nuclear replisome;0.0115931214880257!GO:0030894;replisome;0.0115931214880257!GO:0051540;metal cluster binding;0.01219176064245!GO:0051536;iron-sulfur cluster binding;0.01219176064245!GO:0031968;organelle outer membrane;0.0126226330700363!GO:0016584;nucleosome positioning;0.0126242848851376!GO:0005758;mitochondrial intermembrane space;0.012795961024314!GO:0000910;cytokinesis;0.0128449370747029!GO:0016272;prefoldin complex;0.0128449370747029!GO:0015980;energy derivation by oxidation of organic compounds;0.013082171440974!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0131736751182423!GO:0016787;hydrolase activity;0.0131771019645246!GO:0006650;glycerophospholipid metabolic process;0.0132767929138499!GO:0004861;cyclin-dependent protein kinase inhibitor activity;0.0133716411547285!GO:0042770;DNA damage response, signal transduction;0.013379744406161!GO:0006144;purine base metabolic process;0.013379744406161!GO:0022890;inorganic cation transmembrane transporter activity;0.0134542773141949!GO:0019783;small conjugating protein-specific protease activity;0.0135433704193959!GO:0030027;lamellipodium;0.013647992863808!GO:0030384;phosphoinositide metabolic process;0.0136523697623123!GO:0031252;leading edge;0.0136665732681113!GO:0006506;GPI anchor biosynthetic process;0.013751911955119!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0138519252880877!GO:0008219;cell death;0.0139173195570962!GO:0016265;death;0.0139173195570962!GO:0005869;dynactin complex;0.014202085385943!GO:0019887;protein kinase regulator activity;0.0143712975470631!GO:0005652;nuclear lamina;0.0147680862516679!GO:0031577;spindle checkpoint;0.0150445963921332!GO:0005680;anaphase-promoting complex;0.0150576529850631!GO:0030496;midbody;0.0150576529850631!GO:0030663;COPI coated vesicle membrane;0.0150576529850631!GO:0030126;COPI vesicle coat;0.0150576529850631!GO:0044430;cytoskeletal part;0.015115527669805!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0154644412179362!GO:0008092;cytoskeletal protein binding;0.0154971699883395!GO:0004843;ubiquitin-specific protease activity;0.0160527446210895!GO:0007264;small GTPase mediated signal transduction;0.0162408215389037!GO:0044450;microtubule organizing center part;0.0164652046697544!GO:0022406;membrane docking;0.0166458167579672!GO:0048278;vesicle docking;0.0166458167579672!GO:0009112;nucleobase metabolic process;0.0166715176590202!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0170985925596606!GO:0035267;NuA4 histone acetyltransferase complex;0.0173830837979829!GO:0008213;protein amino acid alkylation;0.0176249949619016!GO:0006479;protein amino acid methylation;0.0176249949619016!GO:0030137;COPI-coated vesicle;0.0176484469735074!GO:0030132;clathrin coat of coated pit;0.0180790011033976!GO:0030705;cytoskeleton-dependent intracellular transport;0.0182388764866321!GO:0005521;lamin binding;0.0187578521751963!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0187769780334114!GO:0055083;monovalent inorganic anion homeostasis;0.0187769780334114!GO:0055064;chloride ion homeostasis;0.0187769780334114!GO:0030644;cellular chloride ion homeostasis;0.0187769780334114!GO:0006376;mRNA splice site selection;0.0190580081718032!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0190580081718032!GO:0008408;3'-5' exonuclease activity;0.0197859871055022!GO:0031570;DNA integrity checkpoint;0.0198242384243228!GO:0046966;thyroid hormone receptor binding;0.0198864591298295!GO:0004523;ribonuclease H activity;0.0199726185599418!GO:0000287;magnesium ion binding;0.0200561635712437!GO:0006695;cholesterol biosynthetic process;0.0206117796250109!GO:0000123;histone acetyltransferase complex;0.0209451766229761!GO:0043130;ubiquitin binding;0.0210089806628439!GO:0032182;small conjugating protein binding;0.0210089806628439!GO:0016311;dephosphorylation;0.0215087805883966!GO:0045936;negative regulation of phosphate metabolic process;0.021687514127808!GO:0004221;ubiquitin thiolesterase activity;0.0218150550253516!GO:0005881;cytoplasmic microtubule;0.0219274546582598!GO:0019843;rRNA binding;0.0219576828391439!GO:0005788;endoplasmic reticulum lumen;0.022440527329276!GO:0007021;tubulin folding;0.0224878822716043!GO:0004518;nuclease activity;0.0227408055775492!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0228540984983652!GO:0043624;cellular protein complex disassembly;0.0232249866948578!GO:0045815;positive regulation of gene expression, epigenetic;0.0237905366625309!GO:0016569;covalent chromatin modification;0.0240973826778027!GO:0032200;telomere organization and biogenesis;0.0240973826778027!GO:0000723;telomere maintenance;0.0240973826778027!GO:0030658;transport vesicle membrane;0.0247508372205747!GO:0009116;nucleoside metabolic process;0.0247776250273443!GO:0008536;Ran GTPase binding;0.0247954404013701!GO:0030176;integral to endoplasmic reticulum membrane;0.0251646906240977!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0253519629139877!GO:0005665;DNA-directed RNA polymerase II, core complex;0.025561649123005!GO:0006406;mRNA export from nucleus;0.0259156917722856!GO:0006220;pyrimidine nucleotide metabolic process;0.0262129635424374!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0263407419276622!GO:0006904;vesicle docking during exocytosis;0.0263407419276622!GO:0009303;rRNA transcription;0.0266551079916801!GO:0043022;ribosome binding;0.026842192162081!GO:0043189;H4/H2A histone acetyltransferase complex;0.0270636806508931!GO:0050178;phenylpyruvate tautomerase activity;0.0272878593115142!GO:0043433;negative regulation of transcription factor activity;0.0280284471009867!GO:0007004;telomere maintenance via telomerase;0.0281787562932584!GO:0006730;one-carbon compound metabolic process;0.0281930459569696!GO:0004721;phosphoprotein phosphatase activity;0.0287157776272515!GO:0030133;transport vesicle;0.0287772780290173!GO:0051287;NAD binding;0.0287772780290173!GO:0042026;protein refolding;0.0288545483307469!GO:0042054;histone methyltransferase activity;0.0288593281319412!GO:0006497;protein amino acid lipidation;0.0290878777372387!GO:0003923;GPI-anchor transamidase activity;0.0305284455322597!GO:0016255;attachment of GPI anchor to protein;0.0305284455322597!GO:0042765;GPI-anchor transamidase complex;0.0305284455322597!GO:0016790;thiolester hydrolase activity;0.0310647783929697!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0317499175209517!GO:0045039;protein import into mitochondrial inner membrane;0.0317499175209517!GO:0035258;steroid hormone receptor binding;0.0318364555615847!GO:0005720;nuclear heterochromatin;0.0318703291829516!GO:0032984;macromolecular complex disassembly;0.0321008574760944!GO:0016579;protein deubiquitination;0.0321008574760944!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0325458208952463!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0327341771879867!GO:0033170;DNA-protein loading ATPase activity;0.0327584490812197!GO:0003689;DNA clamp loader activity;0.0327584490812197!GO:0043284;biopolymer biosynthetic process;0.0328690594202874!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0330475925659432!GO:0030125;clathrin vesicle coat;0.0330475925659432!GO:0030665;clathrin coated vesicle membrane;0.0330475925659432!GO:0019210;kinase inhibitor activity;0.0331256112073865!GO:0005784;translocon complex;0.0335265001241118!GO:0009304;tRNA transcription;0.033573049962679!GO:0019207;kinase regulator activity;0.0336360125879759!GO:0005487;nucleocytoplasmic transporter activity;0.0337051095739264!GO:0019206;nucleoside kinase activity;0.0337051095739264!GO:0042791;5S class rRNA transcription;0.0337051095739264!GO:0000127;transcription factor TFIIIC complex;0.0337051095739264!GO:0042797;tRNA transcription from RNA polymerase III promoter;0.0337051095739264!GO:0042802;identical protein binding;0.033930902379881!GO:0045664;regulation of neuron differentiation;0.0347037509844179!GO:0033116;ER-Golgi intermediate compartment membrane;0.0348069493966566!GO:0006541;glutamine metabolic process;0.0355604344708604!GO:0032039;integrator complex;0.0357213653861586!GO:0042769;DNA damage response, detection of DNA damage;0.0360169464466559!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0360887798157018!GO:0000726;non-recombinational repair;0.0363217125658755!GO:0005851;eukaryotic translation initiation factor 2B complex;0.0369715001470008!GO:0008088;axon cargo transport;0.0377585823851156!GO:0043241;protein complex disassembly;0.0379621383140311!GO:0006289;nucleotide-excision repair;0.0379634108942815!GO:0008143;poly(A) binding;0.0389191711545876!GO:0046112;nucleobase biosynthetic process;0.0408497454713907!GO:0005850;eukaryotic translation initiation factor 2 complex;0.041027260841404!GO:0042809;vitamin D receptor binding;0.0413247992579161!GO:0031371;ubiquitin conjugating enzyme complex;0.0415663453578565!GO:0008637;apoptotic mitochondrial changes;0.041660965239964!GO:0005732;small nucleolar ribonucleoprotein complex;0.0416814086717038!GO:0008538;proteasome activator activity;0.0430616033813997!GO:0043154;negative regulation of caspase activity;0.0437717873660049!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0438898508044277!GO:0009451;RNA modification;0.0439127599588858!GO:0051252;regulation of RNA metabolic process;0.0458918084962876!GO:0008601;protein phosphatase type 2A regulator activity;0.0464830163811562!GO:0008629;induction of apoptosis by intracellular signals;0.0464830163811562!GO:0000209;protein polyubiquitination;0.0465247674431006!GO:0006354;RNA elongation;0.0467220515717477!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0467220515717477!GO:0016417;S-acyltransferase activity;0.0468349500013667!GO:0051128;regulation of cellular component organization and biogenesis;0.0468349500013667!GO:0000303;response to superoxide;0.0471696075272035!GO:0030660;Golgi-associated vesicle membrane;0.0471696075272035!GO:0051789;response to protein stimulus;0.0476732214317288!GO:0006986;response to unfolded protein;0.0476732214317288!GO:0016279;protein-lysine N-methyltransferase activity;0.0482055807754664!GO:0018024;histone-lysine N-methyltransferase activity;0.0482055807754664!GO:0016278;lysine N-methyltransferase activity;0.0482055807754664!GO:0032594;protein transport within lipid bilayer;0.0483875427733068!GO:0032907;transforming growth factor-beta3 production;0.0483875427733068!GO:0032596;protein transport into lipid raft;0.0483875427733068!GO:0032910;regulation of transforming growth factor-beta3 production;0.0483875427733068!GO:0032595;B cell receptor transport within lipid bilayer;0.0483875427733068!GO:0033606;chemokine receptor transport within lipid bilayer;0.0483875427733068!GO:0032600;chemokine receptor transport out of lipid raft;0.0483875427733068!GO:0032599;protein transport out of lipid raft;0.0483875427733068!GO:0032597;B cell receptor transport into lipid raft;0.0483875427733068!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0483875427733068!GO:0042326;negative regulation of phosphorylation;0.0484092124556708!GO:0008652;amino acid biosynthetic process;0.0484092124556708!GO:0006916;anti-apoptosis;0.0485181063336009!GO:0051129;negative regulation of cellular component organization and biogenesis;0.0485339075694788!GO:0003756;protein disulfide isomerase activity;0.0486466580931295!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0486466580931295
 |sample_id=10844
 |sample_note=
@@ Line 76: / Line 99: @@
 |sample_tissue=skin
 |top_motifs=POU6F1:3.76335713863;SOX{8,9,10}:3.28270620467;BREu{core}:3.16089337843;NKX2-3_NKX2-5:2.94445761357;NANOG:2.74576526173;TFDP1:2.54169461394;ADNP_IRX_SIX_ZHX:2.33685006144;NFY{A,B,C}:2.33400603659;MYOD1:2.30387308024;LMO2:2.06358489504;E2F1..5:2.04693724697;POU1F1:2.0210053614;LHX3,4:1.98547098942;NRF1:1.73809527491;ZNF143:1.73596491698;SOX17:1.70814019014;YY1:1.69736502642;HBP1_HMGB_SSRP1_UBTF:1.68669799058;PBX1:1.66373024443;AHR_ARNT_ARNT2:1.53463347837;ELK1,4_GABP{A,B1}:1.50388786447;ZEB1:1.47726958336;SNAI1..3:1.46637822582;VSX1,2:1.46036152042;NKX6-1,2:1.4074336104;SOX2:1.39984098484;HOX{A4,D4}:1.38773464672;PRRX1,2:1.33395051326;FOXQ1:1.32842975264;PAX3,7:1.32172242271;POU2F1..3:1.29543277648;GFI1:1.22601697;ONECUT1,2:1.155705998;PITX1..3:1.15046963274;PAX6:1.12287124138;FOXD3:1.12095320513;MED-1{core}:1.08483390917;POU5F1:1.06381108362;RFX2..5_RFXANK_RFXAP:1.06073294778;PATZ1:1.01081739354;RBPJ:0.993239946549;LEF1_TCF7_TCF7L1,2:0.991130375198;ATF4:0.984633930901;ARID5B:0.971233932648;PDX1:0.924892947364;FOXM1:0.922293034195;RFX1:0.917446742923;XCPE1{core}:0.900164070916;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.871913815168;ZFP161:0.860357039553;DBP:0.834046323377;JUN:0.831422854557;RREB1:0.808717560287;MTE{core}:0.793689043321;SOX5:0.790757150085;NHLH1,2:0.769850913452;FOXP1:0.73181288662;HOX{A6,A7,B6,B7}:0.698832605053;TFAP2B:0.693867139119;STAT1,3:0.692562139981;TGIF1:0.690688091475;MZF1:0.684956061088;IKZF2:0.64015087665;FOXL1:0.629147538333;EVI1:0.597133445344;CUX2:0.597030618851;HOXA9_MEIS1:0.595000798987;PAX8:0.589941051834;FOXA2:0.509869439405;NKX3-1:0.473862114029;PAX5:0.446801620731;HIC1:0.428996186595;REST:0.412062535609;TEF:0.392827285678;RORA:0.383965840713;ATF5_CREB3:0.379261365733;MTF1:0.377525627546;HSF1,2:0.353241605111;ZNF423:0.353158512685;GFI1B:0.347433566681;NKX2-1,4:0.34384331122;PAX4:0.33656631745;MYB:0.32499754418;NR5A1,2:0.301879133312;ATF2:0.27982581339;BPTF:0.269459334924;bHLH_family:0.26107885526;EGR1..3:0.25963314782;ZNF384:0.258108746005;AR:0.249453143754;FOX{F1,F2,J1}:0.245574066599;ZBTB6:0.232019251686;AIRE:0.227373780065;GTF2I:0.223571161162;OCT4_SOX2{dimer}:0.202480448789;HAND1,2:0.173517822984;NKX3-2:0.136271356924;STAT5{A,B}:0.102198879268;TAL1_TCF{3,4,12}:0.0837253463259;CDX1,2,4:0.0758125786262;FOX{D1,D2}:0.0473375467014;CDC5L:0.038159537485;MYFfamily:0.0338472237115;ESRRA:-0.0498313712265;ZBTB16:-0.0519778173233;UFEwm:-0.0627864901566;NR6A1:-0.0771168937077;HMX1:-0.0847876422148;PPARG:-0.0925205352855;POU3F1..4:-0.121516746102;EN1,2:-0.155936608555;CRX:-0.163842397654;TP53:-0.175085003174;HNF1A:-0.176649513172;ZIC1..3:-0.190736211435;SP1:-0.198466306544;PRDM1:-0.206122067403;GATA6:-0.207719757882;KLF4:-0.223857021845;CREB1:-0.227150323275;EBF1:-0.229504318285;GATA4:-0.235470997367;FOXP3:-0.23992518268;FOXN1:-0.243628184483;TOPORS:-0.27213676909;MEF2{A,B,C,D}:-0.272714021304;T:-0.285076220767;GTF2A1,2:-0.303776163858;GZF1:-0.362875524963;HES1:-0.371312449178;NFE2L2:-0.395717354835;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.408220941504;TLX1..3_NFIC{dimer}:-0.420671280334;HOX{A5,B5}:-0.430655924235;NR1H4:-0.437699300557;HNF4A_NR2F1,2:-0.450987821978;NKX2-2,8:-0.468073049273;MAZ:-0.47679728488;FOSL2:-0.501994363506;PAX1,9:-0.52680242036;TBX4,5:-0.539301328137;SREBF1,2:-0.542060609318;FOX{I1,J2}:-0.54988563519;ZNF238:-0.568468942848;HMGA1,2:-0.573211955033;PAX2:-0.579265862588;TBP:-0.614167912324;GCM1,2:-0.63691966067;FOS_FOS{B,L1}_JUN{B,D}:-0.657389713549;RUNX1..3:-0.657599513901;SPI1:-0.695143028587;NFIX:-0.696819873532;BACH2:-0.697687995026;NFKB1_REL_RELA:-0.725623162024;ELF1,2,4:-0.756417671659;NFE2:-0.759849578867;DMAP1_NCOR{1,2}_SMARC:-0.770254958328;HLF:-0.796686457449;FOXO1,3,4:-0.817237884215;NFIL3:-0.818322024479;SPIB:-0.83557306755;ALX1:-0.836517808532;EP300:-0.853659383746;SPZ1:-0.868894298385;NFE2L1:-0.938127798005;MAFB:-0.998919054222;TFAP4:-1.01500527906;ALX4:-1.01545101793;XBP1:-1.03520072484;NANOG{mouse}:-1.09918436751;ETS1,2:-1.10256639589;TEAD1:-1.10299363153;MYBL2:-1.12143933382;CEBPA,B_DDIT3:-1.12229709558;NR3C1:-1.13117443043;ATF6:-1.16503853179;SMAD1..7,9:-1.18398027351;IKZF1:-1.19116784248;TLX2:-1.24209222318;HIF1A:-1.26253148936;TFAP2{A,C}:-1.28681099951;IRF7:-1.35100198183;ZNF148:-1.37931753116;IRF1,2:-1.42625429224;GLI1..3:-1.45248654203;RXRA_VDR{dimer}:-1.588698446;ESR1:-1.64425513517;TFCP2:-1.65630408426;NFATC1..3:-1.75251773665;RXR{A,B,G}:-1.78357281927;STAT2,4,6:-1.86079650604;SRF:-1.92640370296
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10844-111E7;search_select_hide=table117:FF:10844-111E7
 }}

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FF:10844-111E7: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 15:09, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0