FF:11397-118D2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005750 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005750 | ||
|accession_numbers=CAGE;DRX008460;DRR009332;DRZ000757;DRZ002142;DRZ012107;DRZ013492 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037210;DRR041576;DRZ007218 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001134,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002036,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000055,CL:0000003,CL:0000723,CL:0000035,CL:0000548,CL:0000680,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000211,CL:0000255,CL:0000188,CL:0000034,CL:0000594 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000165 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr1:203055129..203055147,-!p1@MYOG!2.00!98.95!MYOG;;chr8:25902876..25902936,-!p1@EBF2!1.76!55.99!EBF2;;chr12:66218255..66218304,+!p3@HMGA2!1.65!113.35!HMGA2;;chr7:19157248..19157268,-!p1@TWIST1!1.45!74.06!TWIST1;;chr12:66218212..66218244,+!p5@HMGA2!1.42!36.82!HMGA2;;chr1:170633348..170633399,+!p2@PRRX1!1.35!29.15!PRRX1;;chr12:66218183..66218209,+!p4@HMGA2!1.29!35.37!HMGA2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.28!17.90!HOXC5;;chr6:34204921..34204939,+!p3@HMGA1!1.26!504.29!HMGA1;;chr12:66218598..66218645,+!p2@HMGA2!1.26!78.83!HMGA2;;chr11:17741111..17741124,+!p1@MYOD1!1.25!16.79!MYOD1;;chr1:170632285..170632309,+!p1@PRRX1!1.22!17.64!PRRX1;;chr15:42749722..42749739,-!p2@ZFP106!1.19!25.82!ZFP106;;chr2:5832508..5832524,+!p1@SOX11!1.16!13.30!SOX11;;chr7:15726296..15726315,-!p1@MEOX2!1.15!13.12!MEOX2;;chr17:1959369..1959388,+!p2@HIC1!1.14!33.66!HIC1;;chr14:61116183..61116208,-!p1@SIX1!1.12!45.94!SIX1;;chr1:170633262..170633285,+!p3@PRRX1!1.08!12.70!PRRX1;;chr12:54402745..54402788,+!p1@HOXC8!1.01!9.20!HOXC8;;chr15:57511609..57511651,+!p2@TCF12!0.98!14.74!TCF12;;chr7:27192185..27192209,-!p1@HOXA3!0.95!7.93!HOXA3;;chr12:54393880..54393962,+!p1@HOXC9!0.94!7.67!HOXC9;;chr7:27205106..27205134,-!p2@HOXA9!0.91!7.16!HOXA9;;chr1:40105299..40105326,-!p1@HEYL!0.91!7.16!HEYL;;chr5:158526917..158526932,-!p1@EBF1!0.90!17.90!EBF1;;chr7:15726243..15726293,-!p2@MEOX2!0.90!6.99!MEOX2;;chr7:27205136..27205164,-!p1@HOXA9!0.90!6.90!HOXA9;;chr17:1958388..1958404,+!p1@HIC1!0.88!44.57!HIC1;;chr8:49833948..49833973,-!p2@SNAI2!0.88!43.81!SNAI2;;chr17:59477233..59477263,+!p1@TBX2!0.88!21.56!TBX2;;chr3:12330560..12330579,+!p1@PPARG!0.88!7.59!PPARG;;chr11:46299199..46299233,+!p1@CREB3L1!0.87!35.03!CREB3L1;;chr2:176994408..176994492,+!p1@HOXD8!0.87!6.48!HOXD8;;chr6:34204672..34204692,+!p1@HMGA1!0.84!711.47!HMGA1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.84!6.39!GLIS1;;chr2:102091566..102091581,-!p1@RFX8!0.84!5.97!RFX8;;chr3:147127142..147127168,+!p1@ZIC1!0.84!5.88!ZIC1;;chr21:36421535..36421610,-!p2@RUNX1!0.83!21.56!RUNX1;;chr7:19157043..19157088,-!p2@TWIST1!0.83!15.34!TWIST1;;chr12:66218378..66218401,+!p6@HMGA2!0.83!9.12!HMGA2;;chr8:49833978..49833996,-!p1@SNAI2!0.82!123.58!SNAI2;;chr3:12329358..12329393,+!p3@PPARG!0.82!14.57!PPARG;;chr9:16870659..16870675,-!p2@BNC2!0.82!6.99!BNC2;;chr12:66218836..66218888,+!p1@HMGA2!0.81!55.40!HMGA2;;chr10:131762504..131762555,-!p1@EBF3!0.81!5.45!EBF3;;chr12:66218420..66218439,+!p12@HMGA2!0.81!5.45!HMGA2;;chr1:170632250..170632277,+!p7@PRRX1!0.81!5.45!PRRX1;;chr1:170632959..170632987,+!p4@PRRX1!0.80!5.88!PRRX1;;chr12:66218152..66218174,+!p10@HMGA2!0.78!5.37!HMGA2;;chr21:47063625..47063658,+!p1@PCBP3!0.77!23.18!PCBP3;;chr12:66218573..66218596,+!p7@HMGA2!0.77!7.67!HMGA2;;chr12:66358080..66358094,+!p15@HMGA2!0.77!4.94!HMGA2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.77!4.86!HOXC5;;chr3:12329397..12329433,+!p2@PPARG!0.76!11.59!PPARG;;chr19:45260775..45260838,+!p5@BCL3!0.75!6.14!BCL3;;chr1:170632477..170632506,+!p6@PRRX1!0.75!4.60!PRRX1;;chr9:16870710..16870763,-!p1@BNC2!0.74!8.27!BNC2;;chr11:46299539..46299620,+!p2@CREB3L1!0.74!7.93!CREB3L1;;chr2:239756671..239756732,+!p1@TWIST2!0.73!15.34!TWIST2;;chr16:86600426..86600441,+!p1@FOXC2!0.73!11.85!FOXC2;;chr9:16705069..16705086,-!p3@BNC2!0.73!4.43!BNC2;;chr17:46682321..46682362,-!p1@HOXB6!0.73!4.35!HOXB6;;chr12:54402790..54402805,+!p2@HOXC8!0.72!4.26!HOXC8;;chr12:54378923..54378966,+!p1@HOXC10!0.71!4.18!HOXC10;;chr2:119604456..119604501,-!p2@EN1!0.71!4.18!EN1;;chr3:147111231..147111281,+!p3@ZIC1!0.71!4.09!ZIC1;;chr1:119530493..119530572,-!p1@TBX15!0.71!4.09!TBX15;;chr4:299227..299272,-!p1@ZNF732!0.70!4.01!ZNF732;;chr12:66218443..66218461,+!p8@HMGA2!0.69!5.11!HMGA2;;chr12:54394309..54394336,+!p2@HOXC9!0.69!3.92!HOXC9;;chr12:54410948..54410992,+!p3@HOXC5!0.69!3.92!HOXC5;;chr2:121493425..121493474,+!p1@GLI2!0.68!9.20!GLI2;;chr11:65686802..65686818,+!p6@DRAP1!0.68!7.16!DRAP1;;chr20:50721803..50721857,-!p2@ZFP64!0.68!6.31!ZFP64;;chr2:45236540..45236577,-!p1@SIX2!0.68!3.84!SIX2;;chr8:128748308..128748324,+!p2@MYC!0.66!115.06!MYC;;chr7:15725757..15725828,-!p5@MEOX2!0.66!3.58!MEOX2;;chr2:68592406..68592424,+!p1@PLEK!0.66!3.58!PLEK;;chr11:65686732..65686756,+!p2@DRAP1!0.65!16.70!DRAP1;;chr2:19558373..19558392,-!p1@OSR1!0.65!10.57!OSR1;;chr6:45390025..45390076,+!p2@RUNX2!0.65!9.29!RUNX2;;chr6:85474299..85474324,-!p1@TBX18!0.65!6.73!TBX18;;chr15:83953397..83953425,-!p1@BNC1!0.65!4.09!BNC1;;chr1:170632723..170632739,+!p8@PRRX1!0.65!3.49!PRRX1;;chr14:61116168..61116180,-!p2@SIX1!0.64!4.01!SIX1;;chr11:17741254..17741282,+!p2@MYOD1!0.64!3.41!MYOD1;;chr17:59477403..59477414,+!p4@TBX2!0.64!3.41!TBX2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.64!3.32!PEG3;;chr1:170632439..170632465,+!p11@PRRX1!0.64!3.32!PRRX1;;chr2:223163706..223163730,-!p1@PAX3!0.63!3.24!PAX3;;chr11:125034640..125034655,+!p1@PKNOX2!0.63!3.24!PKNOX2;;chr12:54394059..54394088,+!p3@HOXC9!0.62!3.15!HOXC9;;chr16:1031762..1031781,+!p1@SOX8!0.62!3.15!SOX8;;chr5:158527104..158527135,-!p4@EBF1!0.62!3.15!EBF1;;chr17:41277372..41277418,-!p1@BRCA1!0.61!12.95!BRCA1;;chr17:59477197..59477212,+!p2@TBX2!0.61!5.80!TBX2;;chr17:59477275..59477286,+!p3@TBX2!0.61!4.35!TBX2;;chr15:67357924..67357952,+!p2@SMAD3!0.60!23.44!SMAD3;;chr11:65667884..65667895,-!p2@FOSL1!0.60!13.64!FOSL1;;chr6:85473156..85473210,-!p2@TBX18!0.60!3.75!TBX18;;chr12:81110684..81110700,+!p1@MYF5!0.59!2.90!MYF5;;chr3:147111198..147111225,+!p4@ZIC1!0.59!2.90!ZIC1;;chr6:31126291..31126399,+!p1@TCF19!0.58!32.47!TCF19;;chr12:3068544..3068597,+!p1@TEAD4!0.58!20.20!TEAD4;;chr2:239148671..239148686,-!p1@HES6!0.58!12.10!HES6;;chr2:239756739..239756755,+!p2@TWIST2!0.58!5.37!TWIST2;;chr19:22817119..22817145,+!p1@ZNF492!0.58!5.11!ZNF492;;chr19:46801639..46801699,+!p1@HIF3A!0.58!2.81!HIF3A;;chr19:47523058..47523114,+!p1@NPAS1!0.58!2.81!NPAS1;;chr12:66218469..66218477,+!p16@HMGA2!0.58!2.81!HMGA2;;chr12:66357214..66357233,+!p13@HMGA2!0.58!2.81!HMGA2;;chr9:16728161..16728185,-!p4@BNC2!0.58!2.81!BNC2;;chr9:16728327..16728338,-!p5@BNC2!0.58!2.81!BNC2;;chr20:42295713..42295738,+!p2@MYBL2!0.57!19.43!MYBL2;;chr8:77593474..77593612,+!p1@ZFHX4!0.57!13.64!ZFHX4;;chr17:46622205..46622218,-!p3@HOXB2!0.57!3.24!HOXB2;;chr12:54447637..54447659,+!p4@HOXC4!0.57!2.73!HOXC4;;chr12:115121962..115121987,-!p1@TBX3!0.56!27.61!TBX3;;chr5:88178983..88179012,-!p1@MEF2C!0.56!25.06!MEF2C;;chr12:2986206..2986258,-!p2@FOXM1!0.56!19.69!FOXM1;;chr14:62162285..62162296,+!p3@HIF1A!0.56!16.79!HIF1A;;chr7:42276822..42276895,-!p2@GLI3!0.56!9.20!GLI3;;chr1:247171347..247171366,-!p2@ZNF695!0.56!5.37!ZNF695;;chr5:321810..321877,+!p1@AHRR!0.55!9.63!AHRR;;chr7:27183263..27183284,-!p2@HOXA5!0.55!2.56!HOXA5;;chr17:41622765..41622821,-!p2@ETV4!0.54!4.18!ETV4;;chr11:47400078..47400106,-!p1@SPI1!0.54!2.47!SPI1;;chr12:66218904..66218913,+!p11@HMGA2!0.54!2.47!HMGA2;;chr12:2986275..2986363,-!p1@FOXM1!0.53!30.34!FOXM1;;chr15:96873984..96873999,+!p3@NR2F2!0.53!22.16!NR2F2;;chr8:116681409..116681431,-!p2@TRPS1!0.53!7.76!TRPS1;;chr11:47279504..47279563,+!p1@NR1H3!0.53!6.39!NR1H3;;chr11:113930425..113930471,+!p1@ZBTB16!0.53!3.84!ZBTB16;;chr17:46687959..46688007,-!p2@HOXB7!0.53!3.58!HOXB7;;chr11:17741084..17741094,+!p3@MYOD1!0.53!2.39!MYOD1;;chr5:72744594..72744609,-!p1@FOXD1!0.52!13.38!FOXD1;;chr18:22932080..22932170,-!p1@ZNF521!0.52!12.36!ZNF521;;chr2:5832493..5832507,+!p2@SOX11!0.52!2.30!SOX11;;chr1:170633058..170633084,+!p5@PRRX1!0.52!2.30!PRRX1;;chr5:133450365..133450444,+!p1@TCF7!0.51!13.04!TCF7;;chr17:46622114..46622138,-!p4@HOXB2!0.51!3.84!HOXB2;;chr7:27183291..27183324,-!p1@HOXA5!0.51!2.22!HOXA5;;chr10:119303078..119303169,+!p2@EMX2!0.51!2.22!EMX2;;chr12:54380036..54380091,+!p4@HOXC10!0.51!2.22!HOXC10;;chr3:12329339..12329356,+!p5@PPARG!0.51!2.22!PPARG;;chr2:121493492..121493537,+!p2@GLI2!0.50!4.09!GLI2;;chr17:46655704..46655718,-!p2@HOXB4!0.50!3.58!HOXB4;;chr17:46622229..46622257,-!p6@HOXB2!0.50!2.64!HOXB2;;chr3:25470156..25470227,+!p2@RARB!0.50!2.13!RARB;;chr12:54380404..54380433,+!p3@HOXC10!0.50!2.13!HOXC10;;chr1:151032860..151032918,+!p1@MLLT11!0.49!33.32!MLLT11;;chr9:4300050..4300118,-!p1@GLIS3!0.49!17.81!GLIS3;;chr19:49865646..49865718,-!p1@TEAD2!0.48!23.01!TEAD2;;chr19:1592714..1592762,-!p1@MBD3!0.48!20.54!MBD3;;chr5:138609782..138609826,+!p5@MATR3!0.48!17.22!MATR3;;chr12:3069037..3069119,+!p2@TEAD4!0.48!8.78!TEAD4;;chr1:61547894..61547968,+!p2@NFIA!0.48!7.33!NFIA;;chr8:106330656..106330684,+!p1@ZFPM2!0.48!6.56!ZFPM2;;chr2:169312600..169312606,+!p2@CERS6!0.48!3.66!CERS6;;chr17:41622925..41622976,-!p3@ETV4!0.48!3.41!ETV4;;chr19:23299814..23299844,+!p1@ZNF730!0.48!2.64!ZNF730;;chr17:46675558..46675577,-!p2@HOXB6!0.48!2.05!HOXB6;;chr11:125034605..125034636,+!p2@PKNOX2!0.48!2.05!PKNOX2;;chr19:13134772..13134822,+!p2@NFIX!0.47!3.24!NFIX;;chr6:45390077..45390105,+!p9@RUNX2!0.47!2.73!RUNX2;;chr1:221052840..221052875,+!p4@HLX!0.47!2.47!HLX;;chr11:46299186..46299195,+!p3@CREB3L1!0.47!2.30!CREB3L1;;chr1:170632137..170632172,+!p10@PRRX1!0.47!1.96!PRRX1;;chr2:24714729..24714761,+!p1@NCOA1!0.47!1.96!NCOA1;;chr7:15726220..15726236,-!p4@MEOX2!0.47!1.96!MEOX2;;chr17:41622731..41622764,-!p5@ETV4!0.47!1.96!ETV4;;chr4:1873100..1873152,+!p1@WHSC1!0.46!19.43!WHSC1;;chr14:55493763..55493824,-!p1@WDHD1!0.46!19.18!WDHD1;;chr17:61919985..61920012,-!p3@SMARCD2!0.46!5.71!SMARCD2;;chr20:31350184..31350200,+!p1@DNMT3B!0.46!4.77!DNMT3B;;chr2:185463247..185463263,+!p1@ZNF804A!0.46!3.92!ZNF804A;;chr1:247171316..247171336,-!p3@ZNF695!0.46!3.24!ZNF695;;chr5:158526459..158526481,-!p2@EBF1!0.46!2.81!EBF1;;chr17:46622440..46622477,-!p5@HOXB2!0.46!2.22!HOXB2;;chr7:27196267..27196311,-!p1@HOXA7!0.46!1.87!HOXA7;;chr12:54402729..54402743,+!p3@HOXC8!0.46!1.87!HOXC8;;chr14:62162258..62162269,+!p2@HIF1A!0.45!24.12!HIF1A;;chr19:20188776..20188826,+!p1@ZNF90!0.45!6.22!ZNF90;;chr12:54447599..54447630,+!p3@HOXC4!0.45!2.39!HOXC4;;chr12:54379029..54379057,+!p2@HOXC10!0.45!1.79!HOXC10;;chr15:57511589..57511608,+!p4@TCF12!0.45!1.79!TCF12;;chr19:2867325..2867348,+!p1@ZNF556!0.45!1.79!ZNF556;;chr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| |expression_enrichment_score=chr1:203055129..203055147,-!p1@MYOG!2.00!98.95!MYOG;;chr8:25902876..25902936,-!p1@EBF2!1.76!55.99!EBF2;;chr12:66218255..66218304,+!p3@HMGA2!1.65!113.35!HMGA2;;chr7:19157248..19157268,-!p1@TWIST1!1.45!74.06!TWIST1;;chr12:66218212..66218244,+!p5@HMGA2!1.42!36.82!HMGA2;;chr1:170633348..170633399,+!p2@PRRX1!1.35!29.15!PRRX1;;chr12:66218183..66218209,+!p4@HMGA2!1.29!35.37!HMGA2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.28!17.90!HOXC5;;chr6:34204921..34204939,+!p3@HMGA1!1.26!504.29!HMGA1;;chr12:66218598..66218645,+!p2@HMGA2!1.26!78.83!HMGA2;;chr11:17741111..17741124,+!p1@MYOD1!1.25!16.79!MYOD1;;chr1:170632285..170632309,+!p1@PRRX1!1.22!17.64!PRRX1;;chr15:42749722..42749739,-!p2@ZFP106!1.19!25.82!ZFP106;;chr2:5832508..5832524,+!p1@SOX11!1.16!13.30!SOX11;;chr7:15726296..15726315,-!p1@MEOX2!1.15!13.12!MEOX2;;chr17:1959369..1959388,+!p2@HIC1!1.14!33.66!HIC1;;chr14:61116183..61116208,-!p1@SIX1!1.12!45.94!SIX1;;chr1:170633262..170633285,+!p3@PRRX1!1.08!12.70!PRRX1;;chr12:54402745..54402788,+!p1@HOXC8!1.01!9.20!HOXC8;;chr15:57511609..57511651,+!p2@TCF12!0.98!14.74!TCF12;;chr7:27192185..27192209,-!p1@HOXA3!0.95!7.93!HOXA3;;chr12:54393880..54393962,+!p1@HOXC9!0.94!7.67!HOXC9;;chr7:27205106..27205134,-!p2@HOXA9!0.91!7.16!HOXA9;;chr1:40105299..40105326,-!p1@HEYL!0.91!7.16!HEYL;;chr5:158526917..158526932,-!p1@EBF1!0.90!17.90!EBF1;;chr7:15726243..15726293,-!p2@MEOX2!0.90!6.99!MEOX2;;chr7:27205136..27205164,-!p1@HOXA9!0.90!6.90!HOXA9;;chr17:1958388..1958404,+!p1@HIC1!0.88!44.57!HIC1;;chr8:49833948..49833973,-!p2@SNAI2!0.88!43.81!SNAI2;;chr17:59477233..59477263,+!p1@TBX2!0.88!21.56!TBX2;;chr3:12330560..12330579,+!p1@PPARG!0.88!7.59!PPARG;;chr11:46299199..46299233,+!p1@CREB3L1!0.87!35.03!CREB3L1;;chr2:176994408..176994492,+!p1@HOXD8!0.87!6.48!HOXD8;;chr6:34204672..34204692,+!p1@HMGA1!0.84!711.47!HMGA1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.84!6.39!GLIS1;;chr2:102091566..102091581,-!p1@RFX8!0.84!5.97!RFX8;;chr3:147127142..147127168,+!p1@ZIC1!0.84!5.88!ZIC1;;chr21:36421535..36421610,-!p2@RUNX1!0.83!21.56!RUNX1;;chr7:19157043..19157088,-!p2@TWIST1!0.83!15.34!TWIST1;;chr12:66218378..66218401,+!p6@HMGA2!0.83!9.12!HMGA2;;chr8:49833978..49833996,-!p1@SNAI2!0.82!123.58!SNAI2;;chr3:12329358..12329393,+!p3@PPARG!0.82!14.57!PPARG;;chr9:16870659..16870675,-!p2@BNC2!0.82!6.99!BNC2;;chr12:66218836..66218888,+!p1@HMGA2!0.81!55.40!HMGA2;;chr10:131762504..131762555,-!p1@EBF3!0.81!5.45!EBF3;;chr12:66218420..66218439,+!p12@HMGA2!0.81!5.45!HMGA2;;chr1:170632250..170632277,+!p7@PRRX1!0.81!5.45!PRRX1;;chr1:170632959..170632987,+!p4@PRRX1!0.80!5.88!PRRX1;;chr12:66218152..66218174,+!p10@HMGA2!0.78!5.37!HMGA2;;chr21:47063625..47063658,+!p1@PCBP3!0.77!23.18!PCBP3;;chr12:66218573..66218596,+!p7@HMGA2!0.77!7.67!HMGA2;;chr12:66358080..66358094,+!p15@HMGA2!0.77!4.94!HMGA2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.77!4.86!HOXC5;;chr3:12329397..12329433,+!p2@PPARG!0.76!11.59!PPARG;;chr19:45260775..45260838,+!p5@BCL3!0.75!6.14!BCL3;;chr1:170632477..170632506,+!p6@PRRX1!0.75!4.60!PRRX1;;chr9:16870710..16870763,-!p1@BNC2!0.74!8.27!BNC2;;chr11:46299539..46299620,+!p2@CREB3L1!0.74!7.93!CREB3L1;;chr2:239756671..239756732,+!p1@TWIST2!0.73!15.34!TWIST2;;chr16:86600426..86600441,+!p1@FOXC2!0.73!11.85!FOXC2;;chr9:16705069..16705086,-!p3@BNC2!0.73!4.43!BNC2;;chr17:46682321..46682362,-!p1@HOXB6!0.73!4.35!HOXB6;;chr12:54402790..54402805,+!p2@HOXC8!0.72!4.26!HOXC8;;chr12:54378923..54378966,+!p1@HOXC10!0.71!4.18!HOXC10;;chr2:119604456..119604501,-!p2@EN1!0.71!4.18!EN1;;chr3:147111231..147111281,+!p3@ZIC1!0.71!4.09!ZIC1;;chr1:119530493..119530572,-!p1@TBX15!0.71!4.09!TBX15;;chr4:299227..299272,-!p1@ZNF732!0.70!4.01!ZNF732;;chr12:66218443..66218461,+!p8@HMGA2!0.69!5.11!HMGA2;;chr12:54394309..54394336,+!p2@HOXC9!0.69!3.92!HOXC9;;chr12:54410948..54410992,+!p3@HOXC5!0.69!3.92!HOXC5;;chr2:121493425..121493474,+!p1@GLI2!0.68!9.20!GLI2;;chr11:65686802..65686818,+!p6@DRAP1!0.68!7.16!DRAP1;;chr20:50721803..50721857,-!p2@ZFP64!0.68!6.31!ZFP64;;chr2:45236540..45236577,-!p1@SIX2!0.68!3.84!SIX2;;chr8:128748308..128748324,+!p2@MYC!0.66!115.06!MYC;;chr7:15725757..15725828,-!p5@MEOX2!0.66!3.58!MEOX2;;chr2:68592406..68592424,+!p1@PLEK!0.66!3.58!PLEK;;chr11:65686732..65686756,+!p2@DRAP1!0.65!16.70!DRAP1;;chr2:19558373..19558392,-!p1@OSR1!0.65!10.57!OSR1;;chr6:45390025..45390076,+!p2@RUNX2!0.65!9.29!RUNX2;;chr6:85474299..85474324,-!p1@TBX18!0.65!6.73!TBX18;;chr15:83953397..83953425,-!p1@BNC1!0.65!4.09!BNC1;;chr1:170632723..170632739,+!p8@PRRX1!0.65!3.49!PRRX1;;chr14:61116168..61116180,-!p2@SIX1!0.64!4.01!SIX1;;chr11:17741254..17741282,+!p2@MYOD1!0.64!3.41!MYOD1;;chr17:59477403..59477414,+!p4@TBX2!0.64!3.41!TBX2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.64!3.32!PEG3;;chr1:170632439..170632465,+!p11@PRRX1!0.64!3.32!PRRX1;;chr2:223163706..223163730,-!p1@PAX3!0.63!3.24!PAX3;;chr11:125034640..125034655,+!p1@PKNOX2!0.63!3.24!PKNOX2;;chr12:54394059..54394088,+!p3@HOXC9!0.62!3.15!HOXC9;;chr16:1031762..1031781,+!p1@SOX8!0.6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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000188;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000594;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385 | |||
|ffid_belonging_in_development=CL:0000355,CL:0000222 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Satellite%2520Cells%252c%2520donor3.CNhs12008.11397-118D2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Satellite%2520Cells%252c%2520donor3.CNhs12008.11397-118D2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Satellite%2520Cells%252c%2520donor3.CNhs12008.11397-118D2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Satellite%2520Cells%252c%2520donor3.CNhs12008.11397-118D2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Satellite%2520Cells%252c%2520donor3.CNhs12008.11397-118D2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11397-118D2 | |id=FF:11397-118D2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000165 | ||
|is_obsolete= | |||
|library_id=CNhs12008 | |||
|library_id_phase_based=2:CNhs12008 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11397 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.GATCAG.11397 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11397 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.GATCAG.11397 | |||
|name=Skeletal Muscle Satellite Cells, donor3 | |name=Skeletal Muscle Satellite Cells, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12008,LSID837,release011,COMPLETED | |profile_hcage=CNhs12008,LSID837,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10013,,, | |profile_srnaseq=SRhi10013,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=118 | |rna_box=118 | ||
|rna_catalog_number=SC3515 | |rna_catalog_number=SC3515 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=118D2 | |rna_tube_id=118D2 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10013.GATCAG | |||
|sample_age=fetal | |sample_age=fetal | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.9178289011856e-279!GO:0043226;organelle;2.50965013825546e-224!GO:0043229;intracellular organelle;3.89818439094078e-224!GO:0005737;cytoplasm;2.77804303922302e-209!GO:0043231;intracellular membrane-bound organelle;1.13100051560166e-208!GO:0043227;membrane-bound organelle;1.77873193583099e-208!GO:0044422;organelle part;6.39400326723449e-171!GO:0044446;intracellular organelle part;2.68466822029764e-169!GO:0044444;cytoplasmic part;1.52336224818618e-141!GO:0032991;macromolecular complex;3.00552144561256e-127!GO:0030529;ribonucleoprotein complex;1.50329382942926e-98!GO:0005515;protein binding;8.61738833358397e-98!GO:0044237;cellular metabolic process;7.01821779832642e-94!GO:0044238;primary metabolic process;1.83351628120571e-93!GO:0005634;nucleus;4.23848744979912e-93!GO:0044428;nuclear part;2.4442859889946e-87!GO:0043170;macromolecule metabolic process;2.4442859889946e-87!GO:0043233;organelle lumen;6.72927616396542e-85!GO:0031974;membrane-enclosed lumen;6.72927616396542e-85!GO:0003723;RNA binding;5.22948889207586e-77!GO:0005739;mitochondrion;3.28955525190686e-73!GO:0043234;protein complex;3.80435894198399e-67!GO:0016043;cellular component organization and biogenesis;3.63022529252029e-63!GO:0005840;ribosome;4.51319954613853e-59!GO:0006412;translation;1.6762608546661e-55!GO:0006396;RNA processing;3.13811248913595e-55!GO:0043228;non-membrane-bound organelle;2.82556012263286e-53!GO:0043232;intracellular non-membrane-bound organelle;2.82556012263286e-53!GO:0043283;biopolymer metabolic process;2.10645700590019e-51!GO:0003735;structural constituent of ribosome;6.74047793851086e-51!GO:0031981;nuclear lumen;1.01244556372839e-50!GO:0019538;protein metabolic process;2.43205350229036e-50!GO:0044429;mitochondrial part;1.98974223455722e-49!GO:0031090;organelle membrane;3.37688478066296e-49!GO:0031967;organelle envelope;4.71553509603151e-48!GO:0031975;envelope;1.18707353253873e-47!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.78042194188579e-47!GO:0010467;gene expression;1.99342006968228e-46!GO:0006996;organelle organization and biogenesis;1.11721186748638e-45!GO:0044260;cellular macromolecule metabolic process;1.81119983480862e-44!GO:0044267;cellular protein metabolic process;5.92604253685093e-44!GO:0033036;macromolecule localization;1.57347817158395e-43!GO:0033279;ribosomal subunit;1.96065548411665e-43!GO:0009058;biosynthetic process;2.02119476564015e-43!GO:0015031;protein transport;3.96280459872808e-43!GO:0044249;cellular biosynthetic process;4.04148576981217e-42!GO:0016071;mRNA metabolic process;1.23132086710087e-41!GO:0009059;macromolecule biosynthetic process;1.24414154726135e-40!GO:0005829;cytosol;3.20724929554675e-40!GO:0045184;establishment of protein localization;4.58538423521195e-40!GO:0008104;protein localization;5.32858424157749e-40!GO:0046907;intracellular transport;1.6238646818331e-39!GO:0008380;RNA splicing;9.6805932112041e-39!GO:0006259;DNA metabolic process;2.01862599104584e-37!GO:0065003;macromolecular complex assembly;1.94882489623227e-36!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.23245454228196e-36!GO:0006397;mRNA processing;2.40787477469045e-35!GO:0022607;cellular component assembly;2.96621039774724e-35!GO:0007049;cell cycle;8.92542306451792e-32!GO:0005740;mitochondrial envelope;1.0482741122204e-31!GO:0006886;intracellular protein transport;1.85203363038079e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.47430492362819e-31!GO:0005654;nucleoplasm;2.46167029989931e-30!GO:0031966;mitochondrial membrane;9.44238771621705e-30!GO:0019866;organelle inner membrane;9.86893311495949e-30!GO:0005681;spliceosome;1.22966294083422e-27!GO:0003676;nucleic acid binding;1.44595531578941e-27!GO:0005743;mitochondrial inner membrane;2.139047134011e-27!GO:0051641;cellular localization;8.49424525335567e-27!GO:0000166;nucleotide binding;1.26911399476961e-26!GO:0051649;establishment of cellular localization;1.27224014271255e-26!GO:0000278;mitotic cell cycle;5.90443599345867e-26!GO:0044445;cytosolic part;1.14559926251259e-24!GO:0022402;cell cycle process;1.35733108108774e-24!GO:0044451;nucleoplasm part;1.95717426811546e-24!GO:0015934;large ribosomal subunit;9.93026174633009e-23!GO:0006119;oxidative phosphorylation;4.61406384656061e-22!GO:0015935;small ribosomal subunit;9.29845424291518e-22!GO:0006974;response to DNA damage stimulus;1.74703612841431e-21!GO:0005730;nucleolus;2.05964992610557e-21!GO:0031980;mitochondrial lumen;2.21832227544574e-21!GO:0005759;mitochondrial matrix;2.21832227544574e-21!GO:0044455;mitochondrial membrane part;7.94681059406477e-21!GO:0005694;chromosome;8.08006920710694e-21!GO:0016462;pyrophosphatase activity;1.19140120403856e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.83055851892701e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;3.41531239815248e-20!GO:0022403;cell cycle phase;4.92577377651094e-20!GO:0006457;protein folding;6.1052970817655e-20!GO:0000087;M phase of mitotic cell cycle;6.14575700056518e-20!GO:0016070;RNA metabolic process;9.63316562581354e-20!GO:0007067;mitosis;1.04287339914355e-19!GO:0012505;endomembrane system;1.06950380333173e-19!GO:0017111;nucleoside-triphosphatase activity;1.07717239742708e-19!GO:0022618;protein-RNA complex assembly;4.99398884764598e-19!GO:0032553;ribonucleotide binding;1.15239930482476e-18!GO:0032555;purine ribonucleotide binding;1.15239930482476e-18!GO:0017076;purine nucleotide binding;3.03831949795086e-18!GO:0044427;chromosomal part;3.78954997718958e-18!GO:0048770;pigment granule;4.81659507672939e-18!GO:0042470;melanosome;4.81659507672939e-18!GO:0005746;mitochondrial respiratory chain;7.72251665332008e-18!GO:0042254;ribosome biogenesis and assembly;1.77688219972947e-17!GO:0051301;cell division;3.13022589535846e-17!GO:0006281;DNA repair;3.88416728097438e-17!GO:0005761;mitochondrial ribosome;3.96950542185856e-17!GO:0000313;organellar ribosome;3.96950542185856e-17!GO:0006605;protein targeting;5.68508127758713e-17!GO:0005635;nuclear envelope;6.07008706682502e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.69807559855382e-17!GO:0016874;ligase activity;6.98477640987378e-17!GO:0051276;chromosome organization and biogenesis;7.16232260528469e-17!GO:0044265;cellular macromolecule catabolic process;7.46948179471073e-17!GO:0006260;DNA replication;7.482315583355e-17!GO:0051186;cofactor metabolic process;8.85204517799391e-17!GO:0006512;ubiquitin cycle;9.68455309517031e-17!GO:0005524;ATP binding;1.47168224145801e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.62701886906611e-16!GO:0043285;biopolymer catabolic process;2.54007885656316e-16!GO:0008134;transcription factor binding;4.28585037569379e-16!GO:0032559;adenyl ribonucleotide binding;4.51805130619241e-16!GO:0000279;M phase;5.11322366985426e-16!GO:0008135;translation factor activity, nucleic acid binding;5.25327152502133e-16!GO:0050136;NADH dehydrogenase (quinone) activity;7.2984512546951e-16!GO:0003954;NADH dehydrogenase activity;7.2984512546951e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.2984512546951e-16!GO:0005783;endoplasmic reticulum;7.2984512546951e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;1.03444773746467e-15!GO:0031965;nuclear membrane;1.26725596811858e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.42259048453365e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.47342196086515e-15!GO:0019941;modification-dependent protein catabolic process;1.54637944564453e-15!GO:0043632;modification-dependent macromolecule catabolic process;1.54637944564453e-15!GO:0006511;ubiquitin-dependent protein catabolic process;1.61359833300709e-15!GO:0030554;adenyl nucleotide binding;1.66142973632837e-15!GO:0009719;response to endogenous stimulus;2.74541960068201e-15!GO:0009057;macromolecule catabolic process;3.16492951711799e-15!GO:0044257;cellular protein catabolic process;3.33418127629024e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;6.99391663309809e-15!GO:0000375;RNA splicing, via transesterification reactions;6.99391663309809e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.99391663309809e-15!GO:0044453;nuclear membrane part;1.87821843055806e-14!GO:0044432;endoplasmic reticulum part;2.09631483040606e-14!GO:0030163;protein catabolic process;3.06520629156414e-14!GO:0042775;organelle ATP synthesis coupled electron transport;4.39461435621395e-14!GO:0042773;ATP synthesis coupled electron transport;4.39461435621395e-14!GO:0030964;NADH dehydrogenase complex (quinone);6.1970889717592e-14!GO:0045271;respiratory chain complex I;6.1970889717592e-14!GO:0005747;mitochondrial respiratory chain complex I;6.1970889717592e-14!GO:0043412;biopolymer modification;1.58619268970733e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.82896132415405e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;1.82896132415405e-13!GO:0048193;Golgi vesicle transport;2.3297894319897e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.46926438912813e-13!GO:0044248;cellular catabolic process;3.55102563657675e-13!GO:0051082;unfolded protein binding;4.94996599126404e-13!GO:0016192;vesicle-mediated transport;5.9474116651591e-13!GO:0006732;coenzyme metabolic process;7.50816538289794e-13!GO:0005794;Golgi apparatus;8.12636576915176e-13!GO:0006913;nucleocytoplasmic transport;8.12868705824476e-13!GO:0006323;DNA packaging;8.38510760599106e-13!GO:0012501;programmed cell death;1.04346929512064e-12!GO:0003743;translation initiation factor activity;1.46078574505007e-12!GO:0006915;apoptosis;1.5446323398174e-12!GO:0051169;nuclear transport;2.35207777468551e-12!GO:0000074;regulation of progression through cell cycle;2.7198037179074e-12!GO:0051726;regulation of cell cycle;3.31433901379802e-12!GO:0005643;nuclear pore;3.31433901379802e-12!GO:0016604;nuclear body;3.6279581236829e-12!GO:0006399;tRNA metabolic process;3.94372479608687e-12!GO:0006413;translational initiation;5.46181160532221e-12!GO:0006364;rRNA processing;6.16208074181225e-12!GO:0006464;protein modification process;8.25188557525221e-12!GO:0005793;ER-Golgi intermediate compartment;1.24365640149908e-11!GO:0008219;cell death;1.60102181778608e-11!GO:0016265;death;1.60102181778608e-11!GO:0009055;electron carrier activity;3.03397065100328e-11!GO:0016072;rRNA metabolic process;3.27250973057766e-11!GO:0006446;regulation of translational initiation;5.26930420433549e-11!GO:0009259;ribonucleotide metabolic process;5.28414149932688e-11!GO:0065002;intracellular protein transport across a membrane;6.06169889510912e-11!GO:0042623;ATPase activity, coupled;8.45302528094047e-11!GO:0065004;protein-DNA complex assembly;8.58739091415302e-11!GO:0043687;post-translational protein modification;1.05551460432537e-10!GO:0006333;chromatin assembly or disassembly;1.09082634547232e-10!GO:0006163;purine nucleotide metabolic process;1.14670425113983e-10!GO:0006461;protein complex assembly;1.68555649705931e-10!GO:0016887;ATPase activity;1.90262155764379e-10!GO:0017038;protein import;2.688673438007e-10!GO:0006366;transcription from RNA polymerase II promoter;3.09198416818077e-10!GO:0000785;chromatin;3.28161974695062e-10!GO:0004386;helicase activity;3.5169336656232e-10!GO:0003712;transcription cofactor activity;4.33358899702727e-10!GO:0006403;RNA localization;5.29979100715867e-10!GO:0050657;nucleic acid transport;5.88911792255637e-10!GO:0051236;establishment of RNA localization;5.88911792255637e-10!GO:0050658;RNA transport;5.88911792255637e-10!GO:0009150;purine ribonucleotide metabolic process;6.40208812903426e-10!GO:0046930;pore complex;8.35773937545844e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.23330412689362e-09!GO:0004812;aminoacyl-tRNA ligase activity;1.23330412689362e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.23330412689362e-09!GO:0048523;negative regulation of cellular process;1.33497728594741e-09!GO:0015630;microtubule cytoskeleton;1.40976087157954e-09!GO:0008565;protein transporter activity;1.52954822107476e-09!GO:0006164;purine nucleotide biosynthetic process;1.61890803434666e-09!GO:0050794;regulation of cellular process;1.65425671393879e-09!GO:0016607;nuclear speck;1.69097055025959e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.90699873461473e-09!GO:0009260;ribonucleotide biosynthetic process;1.98874701495534e-09!GO:0030532;small nuclear ribonucleoprotein complex;2.56784725746693e-09!GO:0043038;amino acid activation;2.56784725746693e-09!GO:0006418;tRNA aminoacylation for protein translation;2.56784725746693e-09!GO:0043039;tRNA aminoacylation;2.56784725746693e-09!GO:0009060;aerobic respiration;2.73952212097259e-09!GO:0006334;nucleosome assembly;4.49168478356151e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.65362734011743e-09!GO:0005789;endoplasmic reticulum membrane;4.69372192656882e-09!GO:0008639;small protein conjugating enzyme activity;6.20038116845265e-09!GO:0045333;cellular respiration;6.96945617070928e-09!GO:0003697;single-stranded DNA binding;7.84476751381865e-09!GO:0007010;cytoskeleton organization and biogenesis;8.24907500180172e-09!GO:0009152;purine ribonucleotide biosynthetic process;8.83269606880655e-09!GO:0043566;structure-specific DNA binding;8.95034901495656e-09!GO:0005788;endoplasmic reticulum lumen;9.38761184711361e-09!GO:0008026;ATP-dependent helicase activity;1.03459227565649e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.07225140024372e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.25696473355599e-08!GO:0004842;ubiquitin-protein ligase activity;1.26522861433636e-08!GO:0031497;chromatin assembly;1.31106947578626e-08!GO:0009141;nucleoside triphosphate metabolic process;1.47028162840131e-08!GO:0051188;cofactor biosynthetic process;1.71533551139819e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.97047974453933e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.51236502442676e-08!GO:0051246;regulation of protein metabolic process;2.60577705553173e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.62516725554962e-08!GO:0009144;purine nucleoside triphosphate metabolic process;2.62516725554962e-08!GO:0006888;ER to Golgi vesicle-mediated transport;2.69863851291102e-08!GO:0051028;mRNA transport;3.43420336024024e-08!GO:0019787;small conjugating protein ligase activity;3.59372748461647e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.13761522517607e-08!GO:0008092;cytoskeletal protein binding;5.10851585241026e-08!GO:0007005;mitochondrion organization and biogenesis;5.46689646434516e-08!GO:0050789;regulation of biological process;8.04949390313941e-08!GO:0006261;DNA-dependent DNA replication;8.7057823319513e-08!GO:0048519;negative regulation of biological process;9.07558048295025e-08!GO:0006099;tricarboxylic acid cycle;9.71668076522072e-08!GO:0046356;acetyl-CoA catabolic process;9.71668076522072e-08!GO:0009056;catabolic process;9.92337977844062e-08!GO:0005819;spindle;9.95508210384482e-08!GO:0016779;nucleotidyltransferase activity;1.17278201263998e-07!GO:0005667;transcription factor complex;1.24085361142096e-07!GO:0042981;regulation of apoptosis;1.3311850869406e-07!GO:0016853;isomerase activity;1.67541740327669e-07!GO:0015986;ATP synthesis coupled proton transport;1.68379610897957e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.68379610897957e-07!GO:0046034;ATP metabolic process;1.68379610897957e-07!GO:0051170;nuclear import;1.68379610897957e-07!GO:0000775;chromosome, pericentric region;1.71610756062553e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.87833067563029e-07!GO:0051329;interphase of mitotic cell cycle;1.89738436458294e-07!GO:0003924;GTPase activity;1.94929717121628e-07!GO:0043067;regulation of programmed cell death;2.01490334138536e-07!GO:0051325;interphase;2.06808158847393e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.31225564581532e-07!GO:0030120;vesicle coat;2.37760422030036e-07!GO:0030662;coated vesicle membrane;2.37760422030036e-07!GO:0019829;cation-transporting ATPase activity;2.43621994262476e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.50413859138946e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.50413859138946e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.54472684121056e-07!GO:0016740;transferase activity;2.57208999210122e-07!GO:0009117;nucleotide metabolic process;2.76355615805557e-07!GO:0006084;acetyl-CoA metabolic process;3.17301662400858e-07!GO:0016881;acid-amino acid ligase activity;3.17301662400858e-07!GO:0016568;chromatin modification;3.19541829161941e-07!GO:0051187;cofactor catabolic process;3.39306029129335e-07!GO:0006606;protein import into nucleus;3.74677811010232e-07!GO:0005813;centrosome;4.71381403848293e-07!GO:0009109;coenzyme catabolic process;5.18048331663501e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.20736188431598e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.20736188431598e-07!GO:0048475;coated membrane;5.422182413627e-07!GO:0030117;membrane coat;5.422182413627e-07!GO:0030036;actin cytoskeleton organization and biogenesis;7.88386870601942e-07!GO:0005768;endosome;8.94942287019272e-07!GO:0009108;coenzyme biosynthetic process;9.27858040804967e-07!GO:0000245;spliceosome assembly;9.75093931328256e-07!GO:0030029;actin filament-based process;1.01843548772046e-06!GO:0006793;phosphorus metabolic process;1.26882254202826e-06!GO:0006796;phosphate metabolic process;1.26882254202826e-06!GO:0005762;mitochondrial large ribosomal subunit;1.30152459841292e-06!GO:0000315;organellar large ribosomal subunit;1.30152459841292e-06!GO:0005815;microtubule organizing center;1.4972177825136e-06!GO:0045259;proton-transporting ATP synthase complex;1.54319646971001e-06!GO:0031252;leading edge;1.75068689909412e-06!GO:0043623;cellular protein complex assembly;1.85600251236331e-06!GO:0031324;negative regulation of cellular metabolic process;1.90310191276034e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.21779644407516e-06!GO:0043069;negative regulation of programmed cell death;2.29712474954349e-06!GO:0043066;negative regulation of apoptosis;2.80886595562508e-06!GO:0007051;spindle organization and biogenesis;2.84969461894945e-06!GO:0006754;ATP biosynthetic process;3.22690163288129e-06!GO:0006753;nucleoside phosphate metabolic process;3.22690163288129e-06!GO:0016310;phosphorylation;4.4689188011495e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;5.0790071923669e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;5.16193591794001e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;5.17976633375503e-06!GO:0008094;DNA-dependent ATPase activity;5.18355561524832e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;5.45359629987009e-06!GO:0003899;DNA-directed RNA polymerase activity;5.60098626432717e-06!GO:0032446;protein modification by small protein conjugation;5.97590433450419e-06!GO:0006916;anti-apoptosis;6.15736449330276e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.59854923382973e-06!GO:0016859;cis-trans isomerase activity;6.82096563485392e-06!GO:0005657;replication fork;6.89345633148345e-06!GO:0044431;Golgi apparatus part;7.3441569281977e-06!GO:0019899;enzyme binding;7.4634294286536e-06!GO:0006752;group transfer coenzyme metabolic process;7.79388310269316e-06!GO:0006613;cotranslational protein targeting to membrane;8.0327539620775e-06!GO:0016567;protein ubiquitination;8.96237546821514e-06!GO:0000151;ubiquitin ligase complex;9.36459510488652e-06!GO:0004298;threonine endopeptidase activity;1.26092763493963e-05!GO:0009892;negative regulation of metabolic process;1.37088455039507e-05!GO:0016564;transcription repressor activity;1.4380215657851e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.8305980192789e-05!GO:0044440;endosomal part;1.9532231231702e-05!GO:0010008;endosome membrane;1.9532231231702e-05!GO:0000075;cell cycle checkpoint;1.95860034051192e-05!GO:0016491;oxidoreductase activity;2.03868341406313e-05!GO:0003714;transcription corepressor activity;2.06565035247469e-05!GO:0005525;GTP binding;2.08452065592976e-05!GO:0003724;RNA helicase activity;2.2189175245089e-05!GO:0045786;negative regulation of progression through cell cycle;2.50695489970147e-05!GO:0045454;cell redox homeostasis;2.63730046047972e-05!GO:0003713;transcription coactivator activity;2.69067900260917e-05!GO:0016563;transcription activator activity;2.69687733700121e-05!GO:0051427;hormone receptor binding;2.91711466042528e-05!GO:0000314;organellar small ribosomal subunit;2.92532885134044e-05!GO:0005763;mitochondrial small ribosomal subunit;2.92532885134044e-05!GO:0005798;Golgi-associated vesicle;3.3123968516788e-05!GO:0030867;rough endoplasmic reticulum membrane;3.84008044924084e-05!GO:0016481;negative regulation of transcription;3.94825602264334e-05!GO:0005770;late endosome;4.11973611786557e-05!GO:0005791;rough endoplasmic reticulum;4.17148923925524e-05!GO:0043021;ribonucleoprotein binding;4.50579945369816e-05!GO:0008654;phospholipid biosynthetic process;5.2165502479816e-05!GO:0016126;sterol biosynthetic process;5.25151415980533e-05!GO:0015980;energy derivation by oxidation of organic compounds;5.34655129120456e-05!GO:0031988;membrane-bound vesicle;5.55743221336388e-05!GO:0016023;cytoplasmic membrane-bound vesicle;6.29398819341894e-05!GO:0035257;nuclear hormone receptor binding;6.33240706750388e-05!GO:0019222;regulation of metabolic process;6.81709475572812e-05!GO:0044452;nucleolar part;7.80437728267598e-05!GO:0006626;protein targeting to mitochondrion;9.12666759373688e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;9.58114314094475e-05!GO:0042802;identical protein binding;0.000103188308100806!GO:0005048;signal sequence binding;0.000125526334514757!GO:0051168;nuclear export;0.000131128011300819!GO:0000776;kinetochore;0.000133398543587657!GO:0000786;nucleosome;0.000134371145169121!GO:0031982;vesicle;0.000139868229506514!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000141742320538073!GO:0031968;organelle outer membrane;0.000165862990531051!GO:0032561;guanyl ribonucleotide binding;0.000168707190912115!GO:0019001;guanyl nucleotide binding;0.000168707190912115!GO:0006302;double-strand break repair;0.000171172967991863!GO:0005769;early endosome;0.000172285716137085!GO:0006950;response to stress;0.000176385177900192!GO:0031410;cytoplasmic vesicle;0.0001765010715516!GO:0000139;Golgi membrane;0.000176767328456493!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000179493758852133!GO:0043681;protein import into mitochondrion;0.000179949670286456!GO:0000059;protein import into nucleus, docking;0.000181324365295574!GO:0019867;outer membrane;0.000190413896911646!GO:0016787;hydrolase activity;0.00020879148281273!GO:0008033;tRNA processing;0.000228222088593215!GO:0016363;nuclear matrix;0.000228847210365392!GO:0003729;mRNA binding;0.000235285138810367!GO:0051052;regulation of DNA metabolic process;0.000241547678179618!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00025001769637646!GO:0006612;protein targeting to membrane;0.000254183175628013!GO:0006091;generation of precursor metabolites and energy;0.000263001179030623!GO:0008361;regulation of cell size;0.000263001179030623!GO:0065007;biological regulation;0.000272437516636909!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000290437403024856!GO:0003690;double-stranded DNA binding;0.000313125421626689!GO:0033116;ER-Golgi intermediate compartment membrane;0.000313176434020631!GO:0030133;transport vesicle;0.000332028697036527!GO:0016049;cell growth;0.000335582380032399!GO:0016044;membrane organization and biogenesis;0.000349431864683895!GO:0005885;Arp2/3 protein complex;0.000350755757038812!GO:0009165;nucleotide biosynthetic process;0.000351587329738855!GO:0004576;oligosaccharyl transferase activity;0.000376807396031027!GO:0016741;transferase activity, transferring one-carbon groups;0.000379413921748834!GO:0015629;actin cytoskeleton;0.000382681893448564!GO:0008250;oligosaccharyl transferase complex;0.000386717915246916!GO:0006839;mitochondrial transport;0.000419456324956977!GO:0007088;regulation of mitosis;0.000432016494601632!GO:0019843;rRNA binding;0.00043565112780175!GO:0008168;methyltransferase activity;0.000449962320397559!GO:0051789;response to protein stimulus;0.000456578893313942!GO:0006986;response to unfolded protein;0.000456578893313942!GO:0005741;mitochondrial outer membrane;0.000470940728021779!GO:0006383;transcription from RNA polymerase III promoter;0.000476520021091448!GO:0051252;regulation of RNA metabolic process;0.000476656974158158!GO:0001558;regulation of cell growth;0.000481466722374942!GO:0003779;actin binding;0.000481466722374942!GO:0005856;cytoskeleton;0.000485119794122334!GO:0007059;chromosome segregation;0.000488697682097043!GO:0003684;damaged DNA binding;0.000503860778716811!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000509977258995974!GO:0006695;cholesterol biosynthetic process;0.000514599824313227!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000552152108937755!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000584031605358811!GO:0006310;DNA recombination;0.000589951034743675!GO:0030880;RNA polymerase complex;0.000619419423016307!GO:0005905;coated pit;0.000630195162293589!GO:0006414;translational elongation;0.000630846930509767!GO:0008186;RNA-dependent ATPase activity;0.000630846930509767!GO:0003678;DNA helicase activity;0.000685179712842615!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000696030276902954!GO:0005874;microtubule;0.000787414428074076!GO:0007006;mitochondrial membrane organization and biogenesis;0.000806734148137474!GO:0006402;mRNA catabolic process;0.00087187270233509!GO:0051920;peroxiredoxin activity;0.000876005472828736!GO:0000082;G1/S transition of mitotic cell cycle;0.000900850903168699!GO:0048522;positive regulation of cellular process;0.000925380650000242!GO:0004527;exonuclease activity;0.000942813718291397!GO:0043488;regulation of mRNA stability;0.000942813718291397!GO:0043487;regulation of RNA stability;0.000942813718291397!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00094392726921193!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000955404212297846!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000955404212297846!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000955404212297846!GO:0003682;chromatin binding;0.000983159339773897!GO:0001726;ruffle;0.00105787919616578!GO:0005684;U2-dependent spliceosome;0.00108681458397604!GO:0018196;peptidyl-asparagine modification;0.00120028772735914!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00120028772735914!GO:0015631;tubulin binding;0.00121825975095396!GO:0007052;mitotic spindle organization and biogenesis;0.00133118930390148!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00135917303588271!GO:0035258;steroid hormone receptor binding;0.0013627796858811!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00139784561298729!GO:0030663;COPI coated vesicle membrane;0.00148678871295164!GO:0030126;COPI vesicle coat;0.00148678871295164!GO:0031072;heat shock protein binding;0.00148678871295164!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00148678871295164!GO:0000428;DNA-directed RNA polymerase complex;0.00148678871295164!GO:0046474;glycerophospholipid biosynthetic process;0.00154156135549309!GO:0008610;lipid biosynthetic process;0.00154424086282649!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00162485698746454!GO:0005865;striated muscle thin filament;0.00165732138471432!GO:0048500;signal recognition particle;0.00166095164193512!GO:0007093;mitotic cell cycle checkpoint;0.00166095164193512!GO:0006401;RNA catabolic process;0.00166095164193512!GO:0032508;DNA duplex unwinding;0.00166095164193512!GO:0032392;DNA geometric change;0.00166095164193512!GO:0005773;vacuole;0.00169247201636143!GO:0004004;ATP-dependent RNA helicase activity;0.00174319522878058!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00200370375722486!GO:0048468;cell development;0.00218156876692597!GO:0008139;nuclear localization sequence binding;0.00222763704063652!GO:0008180;signalosome;0.00243974210209667!GO:0051287;NAD binding;0.00249467458487447!GO:0007243;protein kinase cascade;0.00254601676619805!GO:0008312;7S RNA binding;0.00254608220382403!GO:0006268;DNA unwinding during replication;0.0025651295571831!GO:0051087;chaperone binding;0.00259621122795483!GO:0030027;lamellipodium;0.00266479683763644!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00269202906735225!GO:0015002;heme-copper terminal oxidase activity;0.00269202906735225!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00269202906735225!GO:0004129;cytochrome-c oxidase activity;0.00269202906735225!GO:0000049;tRNA binding;0.00275167712042343!GO:0009112;nucleobase metabolic process;0.00300722523781427!GO:0065009;regulation of a molecular function;0.00300722523781427!GO:0004674;protein serine/threonine kinase activity;0.0030668901635461!GO:0043284;biopolymer biosynthetic process;0.0030668901635461!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00329456026837099!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00329456026837099!GO:0030132;clathrin coat of coated pit;0.00337667254829507!GO:0005637;nuclear inner membrane;0.00337667254829507!GO:0006595;polyamine metabolic process;0.00342929900349161!GO:0006275;regulation of DNA replication;0.00349817856999612!GO:0048471;perinuclear region of cytoplasm;0.00351237924206284!GO:0007264;small GTPase mediated signal transduction;0.00360072620859001!GO:0009116;nucleoside metabolic process;0.00365057276677861!GO:0045892;negative regulation of transcription, DNA-dependent;0.00368475053583731!GO:0006352;transcription initiation;0.00376881163876127!GO:0031124;mRNA 3'-end processing;0.00391724060508826!GO:0006891;intra-Golgi vesicle-mediated transport;0.00398945549599049!GO:0030137;COPI-coated vesicle;0.00407200582461032!GO:0051539;4 iron, 4 sulfur cluster binding;0.00410228006831639!GO:0016197;endosome transport;0.00412786195351846!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00422221481267971!GO:0045047;protein targeting to ER;0.00422221481267971!GO:0051128;regulation of cellular component organization and biogenesis;0.00430886562574549!GO:0005876;spindle microtubule;0.00431322958619541!GO:0030658;transport vesicle membrane;0.00437179647020307!GO:0008047;enzyme activator activity;0.0044422479871433!GO:0030134;ER to Golgi transport vesicle;0.00445951302922868!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00457809320803548!GO:0000910;cytokinesis;0.00464095052578143!GO:0051540;metal cluster binding;0.00504271189318598!GO:0051536;iron-sulfur cluster binding;0.00504271189318598!GO:0030521;androgen receptor signaling pathway;0.00504271189318598!GO:0004518;nuclease activity;0.0050708810077367!GO:0046467;membrane lipid biosynthetic process;0.00510210358318439!GO:0000323;lytic vacuole;0.00513023313764136!GO:0005764;lysosome;0.00513023313764136!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00539917999375131!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00547151039387354!GO:0046483;heterocycle metabolic process;0.00559503642898842!GO:0007017;microtubule-based process;0.0056830167914215!GO:0030127;COPII vesicle coat;0.00573753618646707!GO:0012507;ER to Golgi transport vesicle membrane;0.00573753618646707!GO:0042770;DNA damage response, signal transduction;0.00580340130976831!GO:0031323;regulation of cellular metabolic process;0.00587466376875639!GO:0030118;clathrin coat;0.0060233083562442!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00612191516529304!GO:0005096;GTPase activator activity;0.0063192163677957!GO:0000178;exosome (RNase complex);0.00665370939334077!GO:0001725;stress fiber;0.00671485651124514!GO:0032432;actin filament bundle;0.00671485651124514!GO:0017166;vinculin binding;0.00672454591300213!GO:0051101;regulation of DNA binding;0.00678382784565446!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00678658895860393!GO:0003746;translation elongation factor activity;0.00685500371540101!GO:0006611;protein export from nucleus;0.00687688746491574!GO:0016251;general RNA polymerase II transcription factor activity;0.00697306648580794!GO:0006144;purine base metabolic process;0.00721204369642674!GO:0006405;RNA export from nucleus;0.00725622865260939!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00759223953353707!GO:0008629;induction of apoptosis by intracellular signals;0.00761486354822555!GO:0000792;heterochromatin;0.0076571242716178!GO:0045941;positive regulation of transcription;0.00776792110934172!GO:0043022;ribosome binding;0.00790256401887598!GO:0000228;nuclear chromosome;0.00797730395620241!GO:0000922;spindle pole;0.00797730395620241!GO:0006740;NADPH regeneration;0.00797730395620241!GO:0006098;pentose-phosphate shunt;0.00797730395620241!GO:0040029;regulation of gene expression, epigenetic;0.00844599196493467!GO:0009303;rRNA transcription;0.0086250054532658!GO:0016860;intramolecular oxidoreductase activity;0.00874273721139229!GO:0048487;beta-tubulin binding;0.00894679170673047!GO:0005832;chaperonin-containing T-complex;0.00898812096620379!GO:0007346;regulation of progression through mitotic cell cycle;0.00902177456420628!GO:0007050;cell cycle arrest;0.00939778543341299!GO:0031970;organelle envelope lumen;0.00969995548452536!GO:0006607;NLS-bearing substrate import into nucleus;0.0105938824037508!GO:0005758;mitochondrial intermembrane space;0.0106085585246831!GO:0008632;apoptotic program;0.0106810884412065!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0106911892694056!GO:0006007;glucose catabolic process;0.01073913572434!GO:0016408;C-acyltransferase activity;0.0109122626886818!GO:0050662;coenzyme binding;0.0109122626886818!GO:0016584;nucleosome positioning;0.0111246696593813!GO:0030176;integral to endoplasmic reticulum membrane;0.0112059641213233!GO:0030041;actin filament polymerization;0.0113623830435691!GO:0004003;ATP-dependent DNA helicase activity;0.0113623830435691!GO:0005862;muscle thin filament tropomyosin;0.0113623830435691!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0113623830435691!GO:0043596;nuclear replication fork;0.0115325111810758!GO:0045893;positive regulation of transcription, DNA-dependent;0.0116824343550014!GO:0019752;carboxylic acid metabolic process;0.0120184571811474!GO:0044262;cellular carbohydrate metabolic process;0.0120949258093558!GO:0032984;macromolecular complex disassembly;0.01218279671365!GO:0000339;RNA cap binding;0.012186840787916!GO:0031123;RNA 3'-end processing;0.0121922511433911!GO:0033673;negative regulation of kinase activity;0.0121942582879694!GO:0006469;negative regulation of protein kinase activity;0.0121942582879694!GO:0003711;transcription elongation regulator activity;0.0124681841558093!GO:0045045;secretory pathway;0.0124695430894334!GO:0043414;biopolymer methylation;0.0124790908821379!GO:0003702;RNA polymerase II transcription factor activity;0.0128807869782869!GO:0005669;transcription factor TFIID complex;0.0131011533418829!GO:0046489;phosphoinositide biosynthetic process;0.0131011533418829!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0131882521239497!GO:0006082;organic acid metabolic process;0.0132052636930886!GO:0031570;DNA integrity checkpoint;0.0133521381210019!GO:0016272;prefoldin complex;0.0134043513628988!GO:0005869;dynactin complex;0.01350725229005!GO:0030660;Golgi-associated vesicle membrane;0.0136862194268589!GO:0031902;late endosome membrane;0.0138206581917899!GO:0031625;ubiquitin protein ligase binding;0.0138883586057937!GO:0006338;chromatin remodeling;0.0139501222097169!GO:0006520;amino acid metabolic process;0.0140395186355225!GO:0006417;regulation of translation;0.0142631113106816!GO:0006220;pyrimidine nucleotide metabolic process;0.0142631113106816!GO:0006979;response to oxidative stress;0.0146946000549164!GO:0008022;protein C-terminus binding;0.0147361974798186!GO:0006778;porphyrin metabolic process;0.0149409879928484!GO:0033013;tetrapyrrole metabolic process;0.0149409879928484!GO:0006350;transcription;0.0149484304719799!GO:0006284;base-excision repair;0.0149484304719799!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0149484304719799!GO:0032259;methylation;0.0149484304719799!GO:0031901;early endosome membrane;0.0149703713744665!GO:0051348;negative regulation of transferase activity;0.0153033796361152!GO:0050681;androgen receptor binding;0.0158274476850948!GO:0009124;nucleoside monophosphate biosynthetic process;0.017167311386644!GO:0009123;nucleoside monophosphate metabolic process;0.017167311386644!GO:0006509;membrane protein ectodomain proteolysis;0.017167311386644!GO:0033619;membrane protein proteolysis;0.017167311386644!GO:0006289;nucleotide-excision repair;0.0177584604528728!GO:0043241;protein complex disassembly;0.0183099741754824!GO:0043065;positive regulation of apoptosis;0.0184704657999233!GO:0043624;cellular protein complex disassembly;0.0188625873834201!GO:0003756;protein disulfide isomerase activity;0.0188625873834201!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0188625873834201!GO:0022890;inorganic cation transmembrane transporter activity;0.0189127783451475!GO:0006733;oxidoreduction coenzyme metabolic process;0.0191873601055861!GO:0030518;steroid hormone receptor signaling pathway;0.0192755720971202!GO:0006897;endocytosis;0.0198715455341293!GO:0010324;membrane invagination;0.0198715455341293!GO:0004532;exoribonuclease activity;0.0198715455341293!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0198715455341293!GO:0051098;regulation of binding;0.0199522760954325!GO:0006270;DNA replication initiation;0.0201778911436582!GO:0006650;glycerophospholipid metabolic process;0.0204131521723267!GO:0006376;mRNA splice site selection;0.0209428773263362!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0209428773263362!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0211594030851262!GO:0008408;3'-5' exonuclease activity;0.021312362826895!GO:0009451;RNA modification;0.0227134996763463!GO:0004177;aminopeptidase activity;0.0230440854653795!GO:0019206;nucleoside kinase activity;0.0231453881001723!GO:0042393;histone binding;0.0231752181877081!GO:0030508;thiol-disulfide exchange intermediate activity;0.0234651292535079!GO:0030496;midbody;0.0236128412097489!GO:0043068;positive regulation of programmed cell death;0.0236672054759289!GO:0015992;proton transport;0.0238933960965558!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0239092878042488!GO:0048518;positive regulation of biological process;0.024201735535294!GO:0015036;disulfide oxidoreductase activity;0.0242482747637971!GO:0006818;hydrogen transport;0.0243592456768259!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0250921915414677!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0252163451657149!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0255102368552541!GO:0022415;viral reproductive process;0.0255854958631506!GO:0000096;sulfur amino acid metabolic process;0.0256335951452218!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0256479971933253!GO:0033559;unsaturated fatty acid metabolic process;0.0258233507046627!GO:0006636;unsaturated fatty acid biosynthetic process;0.0258233507046627!GO:0000152;nuclear ubiquitin ligase complex;0.0258246351232936!GO:0031529;ruffle organization and biogenesis;0.0260031678469793!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0269926250304426!GO:0008154;actin polymerization and/or depolymerization;0.0272093888312638!GO:0030031;cell projection biogenesis;0.027251062831397!GO:0032200;telomere organization and biogenesis;0.027251062831397!GO:0000723;telomere maintenance;0.027251062831397!GO:0007021;tubulin folding;0.0273262585114388!GO:0006892;post-Golgi vesicle-mediated transport;0.0274931252548583!GO:0048144;fibroblast proliferation;0.0274931252548583!GO:0048145;regulation of fibroblast proliferation;0.0274931252548583!GO:0048146;positive regulation of fibroblast proliferation;0.0274931252548583!GO:0043189;H4/H2A histone acetyltransferase complex;0.0274931252548583!GO:0046112;nucleobase biosynthetic process;0.0275363230638932!GO:0030119;AP-type membrane coat adaptor complex;0.0276115687885609!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0276202324477625!GO:0035035;histone acetyltransferase binding;0.0277608551773816!GO:0040008;regulation of growth;0.0278539939007806!GO:0000725;recombinational repair;0.0278539939007806!GO:0000724;double-strand break repair via homologous recombination;0.0278539939007806!GO:0016301;kinase activity;0.027920651906669!GO:0016407;acetyltransferase activity;0.0279823622127022!GO:0030125;clathrin vesicle coat;0.0283793920413341!GO:0030665;clathrin coated vesicle membrane;0.0283793920413341!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0283793920413341!GO:0035267;NuA4 histone acetyltransferase complex;0.0288536188988515!GO:0043601;nuclear replisome;0.0298076082747904!GO:0030894;replisome;0.0298076082747904!GO:0008243;plasminogen activator activity;0.030100564802931!GO:0008538;proteasome activator activity;0.0301174624757602!GO:0007517;muscle development;0.0301174624757602!GO:0006739;NADP metabolic process;0.0304075787493085!GO:0030032;lamellipodium biogenesis;0.0305644399434556!GO:0007265;Ras protein signal transduction;0.0306589957831073!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0307578881232773!GO:0006779;porphyrin biosynthetic process;0.0312065023277797!GO:0033014;tetrapyrrole biosynthetic process;0.0312065023277797!GO:0006378;mRNA polyadenylation;0.031337241163407!GO:0051320;S phase;0.0315736342764159!GO:0006541;glutamine metabolic process;0.0317869335092789!GO:0030145;manganese ion binding;0.0319237520483711!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0323070444151434!GO:0045039;protein import into mitochondrial inner membrane;0.0323070444151434!GO:0046128;purine ribonucleoside metabolic process;0.0332829704015195!GO:0042278;purine nucleoside metabolic process;0.0332829704015195!GO:0008536;Ran GTPase binding;0.0332829704015195!GO:0009161;ribonucleoside monophosphate metabolic process;0.0332829704015195!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0332829704015195!GO:0000819;sister chromatid segregation;0.0338825092455264!GO:0010468;regulation of gene expression;0.0343051855936412!GO:0008286;insulin receptor signaling pathway;0.0346419450538491!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0348168954293336!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0348168954293336!GO:0031371;ubiquitin conjugating enzyme complex;0.0353609365853975!GO:0007569;cell aging;0.0353938841418344!GO:0005100;Rho GTPase activator activity;0.035834318782862!GO:0000209;protein polyubiquitination;0.035834318782862!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.035834318782862!GO:0015399;primary active transmembrane transporter activity;0.035834318782862!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.035834318782862!GO:0000070;mitotic sister chromatid segregation;0.035980511345528!GO:0004448;isocitrate dehydrogenase activity;0.0363738516461049!GO:0005784;translocon complex;0.0365357091626844!GO:0030911;TPR domain binding;0.0366001528546695!GO:0008283;cell proliferation;0.0371635612345049!GO:0000781;chromosome, telomeric region;0.0371635612345049!GO:0043130;ubiquitin binding;0.0378688210013177!GO:0032182;small conjugating protein binding;0.0378688210013177!GO:0055003;cardiac myofibril assembly;0.0390823039602916!GO:0055013;cardiac muscle cell development;0.0390823039602916!GO:0022411;cellular component disassembly;0.039134254226677!GO:0000077;DNA damage checkpoint;0.039134254226677!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0392374162373903!GO:0033043;regulation of organelle organization and biogenesis;0.0392374162373903!GO:0000084;S phase of mitotic cell cycle;0.0398329010149808!GO:0006596;polyamine biosynthetic process;0.0402791776671466!GO:0042026;protein refolding;0.0408307228216731!GO:0008276;protein methyltransferase activity;0.0409292869743528!GO:0042168;heme metabolic process;0.0412304573981152!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0417413106356027!GO:0010257;NADH dehydrogenase complex assembly;0.0417413106356027!GO:0033108;mitochondrial respiratory chain complex assembly;0.0417413106356027!GO:0008143;poly(A) binding;0.0417985967812786!GO:0004523;ribonuclease H activity;0.0419166353779007!GO:0047485;protein N-terminus binding;0.0419166353779007!GO:0050178;phenylpyruvate tautomerase activity;0.0424070331420367!GO:0008637;apoptotic mitochondrial changes;0.0424070331420367!GO:0031326;regulation of cellular biosynthetic process;0.0428341545295385!GO:0050790;regulation of catalytic activity;0.0432229732065046!GO:0030131;clathrin adaptor complex;0.0438388078415006!GO:0030833;regulation of actin filament polymerization;0.044363214977542!GO:0017022;myosin binding;0.0446091027527801!GO:0030522;intracellular receptor-mediated signaling pathway;0.0446178705420206!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0454699908650947!GO:0044449;contractile fiber part;0.0461475433905895!GO:0000287;magnesium ion binding;0.0464773678861079!GO:0005663;DNA replication factor C complex;0.0470222475678297!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0473018832366928!GO:0008097;5S rRNA binding;0.0473018832366928!GO:0000123;histone acetyltransferase complex;0.0479934878978394!GO:0045792;negative regulation of cell size;0.0480982285200496!GO:0005732;small nucleolar ribonucleoprotein complex;0.0481733762899875!GO:0008017;microtubule binding;0.048275477308511!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0486541859322403!GO:0046822;regulation of nucleocytoplasmic transport;0.0488495910379183!GO:0030659;cytoplasmic vesicle membrane;0.0496299021839562 | |||
|sample_id=11397 | |sample_id=11397 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=skeletal muscle | |sample_tissue=skeletal muscle | ||
|top_motifs=TFDP1:1.24972140142;RXR{A,B,G}:1.23007519601;POU3F1..4:1.11693181593;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.09942111418;E2F1..5:1.07561739196;GFI1:1.07319685105;EN1,2:1.05602059888;GZF1:0.979460534106;SRF:0.954681442821;TBP:0.908802992284;NR3C1:0.873843674113;HES1:0.842439053052;TFAP4:0.826860022097;GFI1B:0.819053203456;NKX3-1:0.808605800492;HSF1,2:0.770704904381;UFEwm:0.747212977558;NFY{A,B,C}:0.738652676081;ZNF143:0.719802490703;HOX{A5,B5}:0.714201520635;MEF2{A,B,C,D}:0.712381955024;TEAD1:0.700484748311;ALX4:0.694928729954;HOX{A4,D4}:0.667730800138;NKX2-1,4:0.651921944996;AIRE:0.632126613315;TAL1_TCF{3,4,12}:0.608301888108;KLF4:0.596272731639;RXRA_VDR{dimer}:0.518665170908;ZNF238:0.507782217451;NR1H4:0.505382966698;POU1F1:0.502917451016;NKX2-2,8:0.474679358822;MYBL2:0.465949094091;TLX1..3_NFIC{dimer}:0.463098744533;MZF1:0.453777849455;GATA4:0.45321961382;GTF2A1,2:0.44926917677;NHLH1,2:0.447924339623;YY1:0.444316644311;NRF1:0.424591345596;GLI1..3:0.421771692768;NANOG{mouse}:0.411416275854;PBX1:0.398025309768;ESR1:0.392372927627;SOX17:0.390525236927;PAX5:0.384049813406;SPZ1:0.381910954695;EGR1..3:0.380561325173;TOPORS:0.36822322883;CDC5L:0.355591066284;PAX4:0.353719474421;PAX3,7:0.351894721935;XCPE1{core}:0.34918482185;STAT5{A,B}:0.347883557483;HIC1:0.339162370024;MYB:0.338922562256;RBPJ:0.330802606642;ONECUT1,2:0.323277093343;PAX1,9:0.302326926349;GCM1,2:0.297601280789;TFAP2{A,C}:0.275802182932;ZIC1..3:0.273366677929;PATZ1:0.258778115961;ELK1,4_GABP{A,B1}:0.251268682745;ZNF384:0.248450038372;TFCP2:0.220291828997;PPARG:0.19149471679;NR5A1,2:0.187161389092;GTF2I:0.183719601658;MYOD1:0.18245179346;TGIF1:0.160749814483;IKZF1:0.156429908766;BACH2:0.145929149659;MAZ:0.144832743972;TFAP2B:0.141179028075;IKZF2:0.130421513279;PAX8:0.127241562303;EBF1:0.12577204138;SP1:0.1186560983;NFATC1..3:0.114859576666;MTE{core}:0.111810653844;STAT1,3:0.1114658079;ZFP161:0.109529967711;EVI1:0.107908887885;PITX1..3:0.106291511955;CDX1,2,4:0.0779434576437;NFE2L2:0.0748791035371;NFIX:0.0683738483053;LEF1_TCF7_TCF7L1,2:0.0501810425826;PRDM1:0.0500121038768;TEF:0.0379131964551;FOXL1:0.0372261463241;T:0.030301743224;NR6A1:0.0138231918418;AHR_ARNT_ARNT2:9.01021928773e-06;CREB1:-0.00182750095301;FOS_FOS{B,L1}_JUN{B,D}:-0.00275270505074;TP53:-0.0179424904601;TBX4,5:-0.0309455923405;FOXP1:-0.0451545142795;ZBTB16:-0.0530439121366;HLF:-0.0561380438733;ZNF423:-0.0685297839276;HNF1A:-0.0752791462402;POU6F1:-0.0784849390684;FOSL2:-0.0791986441137;RUNX1..3:-0.0804325100316;NKX2-3_NKX2-5:-0.0818467431186;ATF6:-0.0854278838449;ZBTB6:-0.0879151204949;BREu{core}:-0.0930104717486;AR:-0.0930735183424;FOXD3:-0.0957836548203;ZNF148:-0.0972594044884;PRRX1,2:-0.10371370846;ELF1,2,4:-0.110314248346;POU2F1..3:-0.113532074682;ALX1:-0.139464196229;FOXM1:-0.141548208767;SOX{8,9,10}:-0.145628863407;ADNP_IRX_SIX_ZHX:-0.146518620728;RREB1:-0.147859186575;SOX5:-0.153237149334;HNF4A_NR2F1,2:-0.159265054985;PDX1:-0.160141843195;HBP1_HMGB_SSRP1_UBTF:-0.170015874336;XBP1:-0.171227504685;MYFfamily:-0.175605493736;NKX6-1,2:-0.194899104272;RFX1:-0.205960824633;JUN:-0.207125692977;MTF1:-0.210536425961;MED-1{core}:-0.21074958847;RFX2..5_RFXANK_RFXAP:-0.224033453982;NFKB1_REL_RELA:-0.230655177467;NFE2L1:-0.231892292295;HOXA9_MEIS1:-0.267775807617;STAT2,4,6:-0.27109047069;MAFB:-0.271263564187;PAX2:-0.287924319501;DMAP1_NCOR{1,2}_SMARC:-0.290308140935;SMAD1..7,9:-0.294140290454;CUX2:-0.30658276685;bHLH_family:-0.306952113205;PAX6:-0.312177467018;NFE2:-0.313292143845;NKX3-2:-0.316439559137;SPI1:-0.328295680602;POU5F1:-0.347715295266;CEBPA,B_DDIT3:-0.361045165254;LMO2:-0.36325751431;ESRRA:-0.366773481686;LHX3,4:-0.375700624344;REST:-0.402210602516;IRF7:-0.411534349728;SPIB:-0.413812091744;ATF2:-0.414237274878;OCT4_SOX2{dimer}:-0.42626664088;ATF5_CREB3:-0.435174217891;NFIL3:-0.440896041594;ETS1,2:-0.442173912563;FOXA2:-0.442706243094;HAND1,2:-0.449727569066;IRF1,2:-0.460691196123;HIF1A:-0.478431909876;TLX2:-0.485899957405;HMGA1,2:-0.487675902785;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.48938444394;SOX2:-0.525164501598;FOXP3:-0.53207485619;ATF4:-0.54593693708;CRX:-0.549301929784;SREBF1,2:-0.558062472041;FOXO1,3,4:-0.610491830697;HOX{A6,A7,B6,B7}:-0.649287157748;SNAI1..3:-0.660220204841;HMX1:-0.672252168409;FOXQ1:-0.710072134353;GATA6:-0.734129084682;FOXN1:-0.745270755634;BPTF:-0.746877798709;DBP:-0.773065627095;ARID5B:-0.794776087427;RORA:-0.91722061478;EP300:-0.989180341916;ZEB1:-0.99424068383;NANOG:-0.999251701215;VSX1,2:-1.00245293146;FOX{F1,F2,J1}:-1.11135091366;FOX{D1,D2}:-1.15923521983;FOX{I1,J2}:-1.25600697082 | |top_motifs=TFDP1:1.24972140142;RXR{A,B,G}:1.23007519601;POU3F1..4:1.11693181593;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.09942111418;E2F1..5:1.07561739196;GFI1:1.07319685105;EN1,2:1.05602059888;GZF1:0.979460534106;SRF:0.954681442821;TBP:0.908802992284;NR3C1:0.873843674113;HES1:0.842439053052;TFAP4:0.826860022097;GFI1B:0.819053203456;NKX3-1:0.808605800492;HSF1,2:0.770704904381;UFEwm:0.747212977558;NFY{A,B,C}:0.738652676081;ZNF143:0.719802490703;HOX{A5,B5}:0.714201520635;MEF2{A,B,C,D}:0.712381955024;TEAD1:0.700484748311;ALX4:0.694928729954;HOX{A4,D4}:0.667730800138;NKX2-1,4:0.651921944996;AIRE:0.632126613315;TAL1_TCF{3,4,12}:0.608301888108;KLF4:0.596272731639;RXRA_VDR{dimer}:0.518665170908;ZNF238:0.507782217451;NR1H4:0.505382966698;POU1F1:0.502917451016;NKX2-2,8:0.474679358822;MYBL2:0.465949094091;TLX1..3_NFIC{dimer}:0.463098744533;MZF1:0.453777849455;GATA4:0.45321961382;GTF2A1,2:0.44926917677;NHLH1,2:0.447924339623;YY1:0.444316644311;NRF1:0.424591345596;GLI1..3:0.421771692768;NANOG{mouse}:0.411416275854;PBX1:0.398025309768;ESR1:0.392372927627;SOX17:0.390525236927;PAX5:0.384049813406;SPZ1:0.381910954695;EGR1..3:0.380561325173;TOPORS:0.36822322883;CDC5L:0.355591066284;PAX4:0.353719474421;PAX3,7:0.351894721935;XCPE1{core}:0.34918482185;STAT5{A,B}:0.347883557483;HIC1:0.339162370024;MYB:0.338922562256;RBPJ:0.330802606642;ONECUT1,2:0.323277093343;PAX1,9:0.302326926349;GCM1,2:0.297601280789;TFAP2{A,C}:0.275802182932;ZIC1..3:0.273366677929;PATZ1:0.258778115961;ELK1,4_GABP{A,B1}:0.251268682745;ZNF384:0.248450038372;TFCP2:0.220291828997;PPARG:0.19149471679;NR5A1,2:0.187161389092;GTF2I:0.183719601658;MYOD1:0.18245179346;TGIF1:0.160749814483;IKZF1:0.156429908766;BACH2:0.145929149659;MAZ:0.144832743972;TFAP2B:0.141179028075;IKZF2:0.130421513279;PAX8:0.127241562303;EBF1:0.12577204138;SP1:0.1186560983;NFATC1..3:0.114859576666;MTE{core}:0.111810653844;STAT1,3:0.1114658079;ZFP161:0.109529967711;EVI1:0.107908887885;PITX1..3:0.106291511955;CDX1,2,4:0.0779434576437;NFE2L2:0.0748791035371;NFIX:0.0683738483053;LEF1_TCF7_TCF7L1,2:0.0501810425826;PRDM1:0.0500121038768;TEF:0.0379131964551;FOXL1:0.0372261463241;T:0.030301743224;NR6A1:0.0138231918418;AHR_ARNT_ARNT2:9.01021928773e-06;CREB1:-0.00182750095301;FOS_FOS{B,L1}_JUN{B,D}:-0.00275270505074;TP53:-0.0179424904601;TBX4,5:-0.0309455923405;FOXP1:-0.0451545142795;ZBTB16:-0.0530439121366;HLF:-0.0561380438733;ZNF423:-0.0685297839276;HNF1A:-0.0752791462402;POU6F1:-0.0784849390684;FOSL2:-0.0791986441137;RUNX1..3:-0.0804325100316;NKX2-3_NKX2-5:-0.0818467431186;ATF6:-0.0854278838449;ZBTB6:-0.0879151204949;BREu{core}:-0.0930104717486;AR:-0.0930735183424;FOXD3:-0.0957836548203;ZNF148:-0.0972594044884;PRRX1,2:-0.10371370846;ELF1,2,4:-0.110314248346;POU2F1..3:-0.113532074682;ALX1:-0.139464196229;FOXM1:-0.141548208767;SOX{8,9,10}:-0.145628863407;ADNP_IRX_SIX_ZHX:-0.146518620728;RREB1:-0.147859186575;SOX5:-0.153237149334;HNF4A_NR2F1,2:-0.159265054985;PDX1:-0.160141843195;HBP1_HMGB_SSRP1_UBTF:-0.170015874336;XBP1:-0.171227504685;MYFfamily:-0.175605493736;NKX6-1,2:-0.194899104272;RFX1:-0.205960824633;JUN:-0.207125692977;MTF1:-0.210536425961;MED-1{core}:-0.21074958847;RFX2..5_RFXANK_RFXAP:-0.224033453982;NFKB1_REL_RELA:-0.230655177467;NFE2L1:-0.231892292295;HOXA9_MEIS1:-0.267775807617;STAT2,4,6:-0.27109047069;MAFB:-0.271263564187;PAX2:-0.287924319501;DMAP1_NCOR{1,2}_SMARC:-0.290308140935;SMAD1..7,9:-0.294140290454;CUX2:-0.30658276685;bHLH_family:-0.306952113205;PAX6:-0.312177467018;NFE2:-0.313292143845;NKX3-2:-0.316439559137;SPI1:-0.328295680602;POU5F1:-0.347715295266;CEBPA,B_DDIT3:-0.361045165254;LMO2:-0.36325751431;ESRRA:-0.366773481686;LHX3,4:-0.375700624344;REST:-0.402210602516;IRF7:-0.411534349728;SPIB:-0.413812091744;ATF2:-0.414237274878;OCT4_SOX2{dimer}:-0.42626664088;ATF5_CREB3:-0.435174217891;NFIL3:-0.440896041594;ETS1,2:-0.442173912563;FOXA2:-0.442706243094;HAND1,2:-0.449727569066;IRF1,2:-0.460691196123;HIF1A:-0.478431909876;TLX2:-0.485899957405;HMGA1,2:-0.487675902785;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.48938444394;SOX2:-0.525164501598;FOXP3:-0.53207485619;ATF4:-0.54593693708;CRX:-0.549301929784;SREBF1,2:-0.558062472041;FOXO1,3,4:-0.610491830697;HOX{A6,A7,B6,B7}:-0.649287157748;SNAI1..3:-0.660220204841;HMX1:-0.672252168409;FOXQ1:-0.710072134353;GATA6:-0.734129084682;FOXN1:-0.745270755634;BPTF:-0.746877798709;DBP:-0.773065627095;ARID5B:-0.794776087427;RORA:-0.91722061478;EP300:-0.989180341916;ZEB1:-0.99424068383;NANOG:-0.999251701215;VSX1,2:-1.00245293146;FOX{F1,F2,J1}:-1.11135091366;FOX{D1,D2}:-1.15923521983;FOX{I1,J2}:-1.25600697082 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11397-118D2;search_select_hide=table117:FF:11397-118D2 | |||
}} | }} | ||
Latest revision as of 17:57, 4 June 2020
| Name: | Skeletal Muscle Satellite Cells, donor3 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12008 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12008
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12008
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.586 |
| 10 | 10 | 0.62 |
| 100 | 100 | 0.82 |
| 101 | 101 | 0.256 |
| 102 | 102 | 0.515 |
| 103 | 103 | 0.216 |
| 104 | 104 | 0.787 |
| 105 | 105 | 0.0658 |
| 106 | 106 | 0.00107 |
| 107 | 107 | 0.52 |
| 108 | 108 | 0.533 |
| 109 | 109 | 0.29 |
| 11 | 11 | 0.585 |
| 110 | 110 | 0.464 |
| 111 | 111 | 0.438 |
| 112 | 112 | 0.0436 |
| 113 | 113 | 0.899 |
| 114 | 114 | 0.0422 |
| 115 | 115 | 0.759 |
| 116 | 116 | 0.468 |
| 117 | 117 | 0.636 |
| 118 | 118 | 0.204 |
| 119 | 119 | 0.319 |
| 12 | 12 | 0.547 |
| 120 | 120 | 0.151 |
| 121 | 121 | 0.489 |
| 122 | 122 | 0.025 |
| 123 | 123 | 0.00306 |
| 124 | 124 | 0.0142 |
| 125 | 125 | 0.519 |
| 126 | 126 | 0.968 |
| 127 | 127 | 0.466 |
| 128 | 128 | 0.0789 |
| 129 | 129 | 0.0681 |
| 13 | 13 | 0.875 |
| 130 | 130 | 0.0528 |
| 131 | 131 | 0.965 |
| 132 | 132 | 0.915 |
| 133 | 133 | 0.749 |
| 134 | 134 | 0.247 |
| 135 | 135 | 0.264 |
| 136 | 136 | 0.643 |
| 137 | 137 | 0.126 |
| 138 | 138 | 0.0662 |
| 139 | 139 | 0.0033 |
| 14 | 14 | 0.286 |
| 140 | 140 | 0.125 |
| 141 | 141 | 0.292 |
| 142 | 142 | 0.948 |
| 143 | 143 | 0.359 |
| 144 | 144 | 0.834 |
| 145 | 145 | 0.68 |
| 146 | 146 | 0.857 |
| 147 | 147 | 0.34 |
| 148 | 148 | 0.17 |
| 149 | 149 | 0.593 |
| 15 | 15 | 0.127 |
| 150 | 150 | 0.833 |
| 151 | 151 | 0.316 |
| 152 | 152 | 0.341 |
| 153 | 153 | 0.38 |
| 154 | 154 | 0.875 |
| 155 | 155 | 0.00638 |
| 156 | 156 | 0.0819 |
| 157 | 157 | 0.0943 |
| 158 | 158 | 0.0275 |
| 159 | 159 | 0.369 |
| 16 | 16 | 0.872 |
| 160 | 160 | 0.558 |
| 161 | 161 | 0.67 |
| 162 | 162 | 0.351 |
| 163 | 163 | 0.704 |
| 164 | 164 | 0.989 |
| 165 | 165 | 0.373 |
| 166 | 166 | 0.928 |
| 167 | 167 | 0.0916 |
| 168 | 168 | 0.29 |
| 169 | 169 | 0.0469 |
| 17 | 17 | 0.338 |
| 18 | 18 | 0.53 |
| 19 | 19 | 0.957 |
| 2 | 2 | 0.807 |
| 20 | 20 | 0.778 |
| 21 | 21 | 0.26 |
| 22 | 22 | 0.715 |
| 23 | 23 | 0.0294 |
| 24 | 24 | 0.663 |
| 25 | 25 | 0.444 |
| 26 | 26 | 0.972 |
| 27 | 27 | 0.368 |
| 28 | 28 | 0.306 |
| 29 | 29 | 0.719 |
| 3 | 3 | 0.361 |
| 30 | 30 | 0.851 |
| 31 | 31 | 0.426 |
| 32 | 32 | 0.0663 |
| 33 | 33 | 0.842 |
| 34 | 34 | 0.754 |
| 35 | 35 | 0.136 |
| 36 | 36 | 0.0446 |
| 37 | 37 | 0.524 |
| 38 | 38 | 0.373 |
| 39 | 39 | 0.656 |
| 4 | 4 | 0.237 |
| 40 | 40 | 0.0793 |
| 41 | 41 | 0.00765 |
| 42 | 42 | 0.405 |
| 43 | 43 | 0.3 |
| 44 | 44 | 0.313 |
| 45 | 45 | 0.153 |
| 46 | 46 | 0.251 |
| 47 | 47 | 0.544 |
| 48 | 48 | 0.755 |
| 49 | 49 | 0.117 |
| 5 | 5 | 0.125 |
| 50 | 50 | 0.479 |
| 51 | 51 | 0.447 |
| 52 | 52 | 0.402 |
| 53 | 53 | 0.131 |
| 54 | 54 | 0.493 |
| 55 | 55 | 0.365 |
| 56 | 56 | 0.66 |
| 57 | 57 | 0.326 |
| 58 | 58 | 0.0856 |
| 59 | 59 | 0.338 |
| 6 | 6 | 0.878 |
| 60 | 60 | 0.0371 |
| 61 | 61 | 0.703 |
| 62 | 62 | 0.077 |
| 63 | 63 | 0.518 |
| 64 | 64 | 0.398 |
| 65 | 65 | 0.254 |
| 66 | 66 | 0.413 |
| 67 | 67 | 0.584 |
| 68 | 68 | 0.472 |
| 69 | 69 | 0.519 |
| 7 | 7 | 0.32 |
| 70 | 70 | 0.00112 |
| 71 | 71 | 0.385 |
| 72 | 72 | 0.171 |
| 73 | 73 | 0.794 |
| 74 | 74 | 0.634 |
| 75 | 75 | 0.351 |
| 76 | 76 | 0.618 |
| 77 | 77 | 0.423 |
| 78 | 78 | 0.289 |
| 79 | 79 | 0.149 |
| 8 | 8 | 0.95 |
| 80 | 80 | 0.0991 |
| 81 | 81 | 0.542 |
| 82 | 82 | 0.00968 |
| 83 | 83 | 0.49 |
| 84 | 84 | 0.787 |
| 85 | 85 | 0.00462 |
| 86 | 86 | 0.305 |
| 87 | 87 | 0.352 |
| 88 | 88 | 0.951 |
| 89 | 89 | 0.261 |
| 9 | 9 | 0.881 |
| 90 | 90 | 0.276 |
| 91 | 91 | 0.324 |
| 92 | 92 | 0.113 |
| 93 | 93 | 0.892 |
| 94 | 94 | 0.167 |
| 95 | 95 | 0.879 |
| 96 | 96 | 0.27 |
| 97 | 97 | 0.596 |
| 98 | 98 | 0.0982 |
| 99 | 99 | 0.0077 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12008
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000165 human skeletal muscle satellite cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000055 (non-terminally differentiated cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000035 (single fate stem cell)
0000548 (animal cell)
0000680 (muscle precursor cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000188 (cell of skeletal muscle)
0000034 (stem cell)
0000594 (skeletal muscle satellite cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001134 (skeletal muscle tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0002204 (musculoskeletal system)
0000383 (musculature of body)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000165 (human skeletal muscle satellite cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
