FF:11418-118F5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00004749 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004749 | ||
|accession_numbers=CAGE;DRX008256;DRR009128;DRZ000553;DRZ001938;DRZ011903;DRZ013288 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037198;DRR041564;DRZ007206 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0010317,UBERON:0002067,UBERON:0002416 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620,CL:0002551 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000250,FF:0000001,FF:0000062 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr6:34204921..34204939,+!p3@HMGA1!1.91!2267.58!HMGA1;;chr2:239756671..239756732,+!p1@TWIST2!1.87!224.77!TWIST2;;chr2:239756739..239756755,+!p2@TWIST2!1.62!68.00!TWIST2;;chr1:170632285..170632309,+!p1@PRRX1!1.58!41.55!PRRX1;;chr12:66218836..66218888,+!p1@HMGA2!1.54!298.45!HMGA2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.54!33.63!ZBED1;;chr1:170633348..170633399,+!p2@PRRX1!1.52!43.64!PRRX1;;chr12:66218904..66218913,+!p11@HMGA2!1.47!28.25!HMGA2;;chr7:19157248..19157268,-!p1@TWIST1!1.44!71.59!TWIST1;;chr19:46801639..46801699,+!p1@HIF3A!1.42!25.56!HIF3A;;chr12:66218598..66218645,+!p2@HMGA2!1.39!104.76!HMGA2;;chr12:66218255..66218304,+!p3@HMGA2!1.39!62.02!HMGA2;;chr9:132427972..132428056,+!p1@PRRX2!1.37!29.29!PRRX2;;chr11:65687362..65687436,+!p3@DRAP1!1.33!91.46!DRAP1;;chr1:170632959..170632987,+!p4@PRRX1!1.33!22.27!PRRX1;;chr5:2751762..2751784,-!p1@IRX2!1.33!20.33!IRX2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.29!18.53!HOXC5;;chr15:57511609..57511651,+!p2@TCF12!1.28!29.89!TCF12;;chr9:132427883..132427951,+!p2@PRRX2!1.27!17.49!PRRX2;;chr1:170633262..170633285,+!p3@PRRX1!1.26!19.88!PRRX1;;chr11:65667884..65667895,-!p2@FOSL1!1.20!57.09!FOSL1;;chr12:66218923..66218934,+!p14@HMGA2!1.20!14.94!HMGA2;;chr12:54393880..54393962,+!p1@HOXC9!1.19!14.50!HOXC9;;chr17:59477233..59477263,+!p1@TBX2!1.18!43.04!TBX2;;chr12:66358080..66358094,+!p15@HMGA2!1.17!13.75!HMGA2;;chr8:25902876..25902936,-!p1@EBF2!1.15!13.00!EBF2;;chr22:19748231..19748317,+!p1@TBX1!1.14!12.85!TBX1;;chr4:174450089..174450153,-!p2@HAND2!1.13!12.40!HAND2;;chr1:170633058..170633084,+!p5@PRRX1!1.11!11.81!PRRX1;;chr12:66357214..66357233,+!p13@HMGA2!1.10!11.66!HMGA2;;chr2:102091566..102091581,-!p1@RFX8!1.10!11.51!RFX8;;chr12:54402745..54402788,+!p1@HOXC8!1.09!11.36!HOXC8;;chr11:65686732..65686756,+!p2@DRAP1!1.05!44.09!DRAP1;;chr11:65686802..65686818,+!p6@DRAP1!1.05!17.78!DRAP1;;chr12:66218212..66218244,+!p5@HMGA2!1.04!14.50!HMGA2;;chr2:19558373..19558392,-!p1@OSR1!1.03!26.75!OSR1;;chr3:12329397..12329433,+!p2@PPARG!1.02!21.67!PPARG;;chr17:59477275..59477286,+!p3@TBX2!1.02!12.55!TBX2;;chr3:12330560..12330579,+!p1@PPARG!1.02!11.06!PPARG;;chr12:54380036..54380091,+!p4@HOXC10!1.02!9.42!HOXC10;;chr8:128748308..128748324,+!p2@MYC!1.01!263.03!MYC;;chr12:54378923..54378966,+!p1@HOXC10!1.01!9.27!HOXC10;;chr16:86600426..86600441,+!p1@FOXC2!0.99!21.97!FOXC2;;chr7:27205106..27205134,-!p2@HOXA9!0.97!8.37!HOXA9;;chr20:55204351..55204377,+!p1@TFAP2C!0.96!10.46!TFAP2C;;chr1:170632723..170632739,+!p8@PRRX1!0.95!7.92!PRRX1;;chr12:53614115..53614154,-!p1@RARG!0.94!42.89!RARG;;chr7:19157043..19157088,-!p2@TWIST1!0.94!20.03!TWIST1;;chr6:85474299..85474324,-!p1@TBX18!0.93!13.90!TBX18;;chr5:174151553..174151610,+!p1@MSX2!0.90!11.96!MSX2;;chr18:52969844..52969895,-!p27@TCF4!0.90!6.87!TCF4;;chr6:34204973..34204990,+!p4@HMGA1!0.89!94.30!HMGA1;;chr8:49833948..49833973,-!p2@SNAI2!0.89!44.69!SNAI2;;chr6:1312325..1312340,+!p1@FOXQ1!0.89!11.21!FOXQ1;;chr3:141121847..141121868,+!p5@ZBTB38!0.89!10.46!ZBTB38;;chr11:65687222..65687240,+!p7@DRAP1!0.89!8.82!DRAP1;;chr4:174451370..174451387,-!p1@HAND2!0.89!6.73!HAND2;;chr11:47279504..47279563,+!p1@NR1H3!0.88!15.54!NR1H3;;chr17:46687959..46688007,-!p2@HOXB7!0.88!9.27!HOXB7;;chr12:115122318..115122331,-!p2@TBX3!0.87!6.43!TBX3;;chr2:176994408..176994492,+!p1@HOXD8!0.87!6.43!HOXD8;;chr5:2751785..2751808,-!p2@IRX2!0.87!6.43!IRX2;;chr14:24837368..24837401,+!p1@NFATC4!0.86!15.24!NFATC4;;chr3:12329358..12329393,+!p3@PPARG!0.85!15.69!PPARG;;chr12:66218183..66218209,+!p4@HMGA2!0.85!12.11!HMGA2;;chr17:46688334..46688385,-!p1@HOXB7!0.85!9.12!HOXB7;;chr6:85473156..85473210,-!p2@TBX18!0.85!7.47!TBX18;;chr6:34204672..34204692,+!p1@HMGA1!0.84!720.04!HMGA1;;chr7:44143925..44143970,+!p1@AEBP1!0.83!138.39!AEBP1;;chr11:65667846..65667868,-!p1@FOSL1!0.82!159.61!FOSL1;;chr11:65687243..65687276,+!p8@DRAP1!0.82!7.77!DRAP1;;chr15:42749722..42749739,-!p2@ZFP106!0.81!10.31!ZFP106;;chr17:46675420..46675465,-!p3@HOXB6!0.81!6.43!HOXB6;;chr17:46675558..46675577,-!p2@HOXB6!0.80!5.38!HOXB6;;chr12:54380404..54380433,+!p3@HOXC10!0.80!5.38!HOXC10;;chr12:54402790..54402805,+!p2@HOXC8!0.80!5.38!HOXC8;;chr12:54422217..54422239,+!p3@HOXC6!0.80!5.38!HOXC6;;chr11:65687158..65687216,+!p4@DRAP1!0.79!32.43!DRAP1;;chr11:46299199..46299233,+!p1@CREB3L1!0.79!28.84!CREB3L1;;chr12:66218378..66218401,+!p6@HMGA2!0.79!8.37!HMGA2;;chr6:1389789..1389821,+!p1@FOXF2!0.79!7.32!FOXF2;;chr16:86600870..86600921,+!p2@FOXC2!0.79!5.23!FOXC2;;chr17:59477403..59477414,+!p4@TBX2!0.79!5.23!TBX2;;chr15:96874145..96874166,+!p7@NR2F2!0.78!10.16!NR2F2;;chr2:223163706..223163730,-!p1@PAX3!0.77!4.93!PAX3;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.77!4.93!HOXC5;;chr12:115121770..115121781,-!p4@TBX3!0.76!4.78!TBX3;;chr12:54379029..54379057,+!p2@HOXC10!0.76!4.78!HOXC10;;chr12:66218420..66218439,+!p12@HMGA2!0.76!4.78!HMGA2;;chr6:1389989..1390019,+!p2@FOXF2!0.76!4.78!FOXF2;;chr7:27192185..27192209,-!p1@HOXA3!0.76!4.78!HOXA3;;chr7:27205136..27205164,-!p1@HOXA9!0.76!4.78!HOXA9;;chr5:133450365..133450444,+!p1@TCF7!0.75!23.31!TCF7;;chr5:321810..321877,+!p1@AHRR!0.75!15.84!AHRR;;chr5:3595934..3595957,+!p2@IRX1!0.75!4.63!IRX1;;chr7:27224842..27224872,-!p1@HOXA11!0.75!4.63!HOXA11;;chr12:115121962..115121987,-!p1@TBX3!0.74!41.85!TBX3;;chr17:41622925..41622976,-!p3@ETV4!0.74!7.02!ETV4;;chr17:46682321..46682362,-!p1@HOXB6!0.74!4.48!HOXB6;;chr5:174151612..174151633,+!p2@MSX2!0.74!4.48!MSX2;;chr1:170632250..170632277,+!p7@PRRX1!0.74!4.48!PRRX1;;chr17:61919985..61920012,-!p3@SMARCD2!0.73!11.66!SMARCD2;;chr3:141105705..141105770,+!p4@ZBTB38!0.73!5.38!ZBTB38;;chr8:49833978..49833996,-!p1@SNAI2!0.72!98.34!SNAI2;;chr7:14029283..14029311,-!p1@ETV1!0.72!25.26!ETV1;;chr15:96874244..96874259,+!p5@NR2F2!0.72!11.21!NR2F2;;chr11:113930425..113930471,+!p1@ZBTB16!0.72!6.43!ZBTB16;;chr12:66218443..66218461,+!p8@HMGA2!0.72!5.68!HMGA2;;chr15:83953397..83953425,-!p1@BNC1!0.72!4.93!BNC1;;chr7:44143978..44143989,+!p2@AEBP1!0.71!8.07!AEBP1;;chr12:66218469..66218477,+!p16@HMGA2!0.71!4.18!HMGA2;;chr17:59477197..59477212,+!p2@TBX2!0.70!7.47!TBX2;;chr15:96875041..96875052,+!p17@NR2F2!0.70!6.13!NR2F2;;chr1:170632762..170632786,+!p13@PRRX1!0.70!4.04!PRRX1;;chr12:66218573..66218596,+!p7@HMGA2!0.69!6.13!HMGA2;;chr2:200322654..200322707,-!p2@SATB2!0.69!5.98!SATB2;;chr1:170632137..170632172,+!p10@PRRX1!0.69!3.89!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.69!3.89!PRRX1;;chr7:27224795..27224840,-!p2@HOXA11!0.69!3.89!HOXA11;;chr1:158979792..158979814,+!p2@IFI16!0.68!41.70!IFI16;;chr1:170633100..170633112,+!p19@PRRX1!0.68!3.74!PRRX1;;chr12:85673977..85674015,+!p1@ALX1!0.68!3.74!ALX1;;chr3:157823517..157823562,-!p1@SHOX2!0.67!4.04!SHOX2;;chr17:45810594..45810608,+!p1@TBX21!0.66!3.59!TBX21;;chr6:34205372..34205412,+!p5@HMGA1!0.65!20.33!HMGA1;;chr15:96876966..96877017,+!p12@NR2F2!0.65!5.23!NR2F2;;chr15:57511589..57511608,+!p4@TCF12!0.65!3.44!TCF12;;chr5:3595977..3595999,+!p1@IRX1!0.65!3.44!IRX1;;chr2:102091478..102091490,-!p3@RFX8!0.65!3.44!RFX8;;chr11:46299539..46299620,+!p2@CREB3L1!0.64!6.13!CREB3L1;;chr12:96588143..96588185,+!p1@ELK3!0.63!46.78!ELK3;;chr14:61116183..61116208,-!p1@SIX1!0.63!14.50!SIX1;;chr17:41623009..41623053,-!p4@ETV4!0.63!5.68!ETV4;;chr10:119303078..119303169,+!p2@EMX2!0.63!3.29!EMX2;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!0.63!3.29!POU3F3;;chr2:119604456..119604501,-!p2@EN1!0.63!3.29!EN1;;chr2:175199697..175199706,+!p2@SP9!0.63!3.29!SP9;;chr3:138665937..138665968,-!p1@FOXL2!0.63!3.29!FOXL2;;chr3:138665969..138665993,-!p2@FOXL2!0.63!3.29!FOXL2;;chr1:170632310..170632321,+!p15@PRRX1!0.63!3.29!PRRX1;;chr19:13134772..13134822,+!p2@NFIX!0.62!4.93!NFIX;;chrX:66763856..66763896,+!p1@AR!0.62!4.93!AR;;chr1:170633245..170633256,+!p14@PRRX1!0.62!3.14!PRRX1;;chr18:52969674..52969685,-!p24@TCF4!0.62!3.14!TCF4;;chr15:96874012..96874042,+!p2@NR2F2!0.61!32.88!NR2F2;;chr15:96873984..96873999,+!p3@NR2F2!0.60!26.30!NR2F2;;chr12:10875351..10875422,-!p4@CSDA!0.60!6.43!CSDA;;chr15:96874216..96874236,+!p13@NR2F2!0.60!5.08!NR2F2;;chr19:13135386..13135435,+!p4@NFIX!0.60!2.99!NFIX;;chr5:3595961..3595975,+!p3@IRX1!0.60!2.99!IRX1;;chr7:27213893..27213954,-!p1@HOXA10!0.60!2.99!HOXA10;;chr1:170632028..170632043,+!p20@PRRX1!0.60!2.99!PRRX1;;chr1:170632115..170632136,+!p9@PRRX1!0.60!2.99!PRRX1;;chr2:119605214..119605230,-!p1@EN1!0.60!2.99!EN1;;chr2:19558327..19558334,-!p2@OSR1!0.60!2.99!OSR1;;chr3:37217736..37217753,-!p2@LRRFIP2!0.59!14.20!LRRFIP2;;chr17:46691732..46691766,-!p4@HOXB8!0.58!2.84!HOXB8;;chr19:47523058..47523114,+!p1@NPAS1!0.58!2.84!NPAS1;;chr1:170632439..170632465,+!p11@PRRX1!0.58!2.84!PRRX1;;chr20:42543441..42543497,+!p1@TOX2!0.57!14.80!TOX2;;chr3:21792585..21792625,-!p2@ZNF385D!0.57!3.14!ZNF385D;;chr11:65688877..65688891,+!p13@DRAP1!0.57!2.69!DRAP1;;chr16:86612320..86612394,+!p1@FOXL1!0.57!2.69!FOXL1;;chr17:1958388..1958404,+!p1@HIC1!0.56!20.47!HIC1;;chr17:46622070..46622109,-!p1@HOXB2!0.56!6.73!HOXB2;;chr2:200323414..200323455,-!p1@SATB2!0.56!6.43!SATB2;;chr7:113726357..113726443,+!p1@FOXP2!0.56!5.08!FOXP2;;chr15:96869114..96869160,+!p11@NR2F2!0.56!3.89!NR2F2;;chr11:65686776..65686787,+!p9@DRAP1!0.56!3.29!DRAP1;;chr20:39946361..39946379,-!p2@ZHX3!0.55!9.12!ZHX3;;chr7:44143997..44144008,+!p3@AEBP1!0.55!3.44!AEBP1;;chr1:170632051..170632081,+!p16@PRRX1!0.55!2.54!PRRX1;;chr12:54402729..54402743,+!p3@HOXC8!0.55!2.54!HOXC8;;chr17:46675469..46675481,-!p4@HOXB6!0.55!2.54!HOXB6;;chr17:46690839..46690884,-!p1@HOXB8!0.55!2.54!HOXB8;;chr14:21566731..21566836,-!p1@ZNF219!0.54!33.18!ZNF219;;chr12:96588219..96588263,+!p2@ELK3!0.54!22.27!ELK3;;chr11:65686952..65686975,+!p5@DRAP1!0.54!16.89!DRAP1;;chr11:113930291..113930339,+!p2@ZBTB16!0.54!4.48!ZBTB16;;chr7:28448965..28448994,+!p2@CREB5!0.53!10.16!CREB5;;chr9:110250697..110250738,-!p2@KLF4!0.53!2.99!KLF4;;chr7:14028488..14028516,-!p2@ETV1!0.53!2.69!ETV1;;chr7:27196267..27196311,-!p1@HOXA7!0.53!2.39!HOXA7;;chr11:63684602..63684664,-!p1@RCOR2!0.51!5.23!RCOR2;;chr11:47279248..47279264,+!p3@NR1H3!0.51!2.69!NR1H3;;chr10:119302645..119302712,+!p3@EMX2!0.51!2.24!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| |expression_enrichment_score=chr6:34204921..34204939,+!p3@HMGA1!1.91!2267.58!HMGA1;;chr2:239756671..239756732,+!p1@TWIST2!1.87!224.77!TWIST2;;chr2:239756739..239756755,+!p2@TWIST2!1.62!68.00!TWIST2;;chr1:170632285..170632309,+!p1@PRRX1!1.58!41.55!PRRX1;;chr12:66218836..66218888,+!p1@HMGA2!1.54!298.45!HMGA2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.54!33.63!ZBED1;;chr1:170633348..170633399,+!p2@PRRX1!1.52!43.64!PRRX1;;chr12:66218904..66218913,+!p11@HMGA2!1.47!28.25!HMGA2;;chr7:19157248..19157268,-!p1@TWIST1!1.44!71.59!TWIST1;;chr19:46801639..46801699,+!p1@HIF3A!1.42!25.56!HIF3A;;chr12:66218598..66218645,+!p2@HMGA2!1.39!104.76!HMGA2;;chr12:66218255..66218304,+!p3@HMGA2!1.39!62.02!HMGA2;;chr9:132427972..132428056,+!p1@PRRX2!1.37!29.29!PRRX2;;chr11:65687362..65687436,+!p3@DRAP1!1.33!91.46!DRAP1;;chr1:170632959..170632987,+!p4@PRRX1!1.33!22.27!PRRX1;;chr5:2751762..2751784,-!p1@IRX2!1.33!20.33!IRX2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.29!18.53!HOXC5;;chr15:57511609..57511651,+!p2@TCF12!1.28!29.89!TCF12;;chr9:132427883..132427951,+!p2@PRRX2!1.27!17.49!PRRX2;;chr1:170633262..170633285,+!p3@PRRX1!1.26!19.88!PRRX1;;chr11:65667884..65667895,-!p2@FOSL1!1.20!57.09!FOSL1;;chr12:66218923..66218934,+!p14@HMGA2!1.20!14.94!HMGA2;;chr12:54393880..54393962,+!p1@HOXC9!1.19!14.50!HOXC9;;chr17:59477233..59477263,+!p1@TBX2!1.18!43.04!TBX2;;chr12:66358080..66358094,+!p15@HMGA2!1.17!13.75!HMGA2;;chr8:25902876..25902936,-!p1@EBF2!1.15!13.00!EBF2;;chr22:19748231..19748317,+!p1@TBX1!1.14!12.85!TBX1;;chr4:174450089..174450153,-!p2@HAND2!1.13!12.40!HAND2;;chr1:170633058..170633084,+!p5@PRRX1!1.11!11.81!PRRX1;;chr12:66357214..66357233,+!p13@HMGA2!1.10!11.66!HMGA2;;chr2:102091566..102091581,-!p1@RFX8!1.10!11.51!RFX8;;chr12:54402745..54402788,+!p1@HOXC8!1.09!11.36!HOXC8;;chr11:65686732..65686756,+!p2@DRAP1!1.05!44.09!DRAP1;;chr11:65686802..65686818,+!p6@DRAP1!1.05!17.78!DRAP1;;chr12:66218212..66218244,+!p5@HMGA2!1.04!14.50!HMGA2;;chr2:19558373..19558392,-!p1@OSR1!1.03!26.75!OSR1;;chr3:12329397..12329433,+!p2@PPARG!1.02!21.67!PPARG;;chr17:59477275..59477286,+!p3@TBX2!1.02!12.55!TBX2;;chr3:12330560..12330579,+!p1@PPARG!1.02!11.06!PPARG;;chr12:54380036..54380091,+!p4@HOXC10!1.02!9.42!HOXC10;;chr8:128748308..128748324,+!p2@MYC!1.01!263.03!MYC;;chr12:54378923..54378966,+!p1@HOXC10!1.01!9.27!HOXC10;;chr16:86600426..86600441,+!p1@FOXC2!0.99!21.97!FOXC2;;chr7:27205106..27205134,-!p2@HOXA9!0.97!8.37!HOXA9;;chr20:55204351..55204377,+!p1@TFAP2C!0.96!10.46!TFAP2C;;chr1:170632723..170632739,+!p8@PRRX1!0.95!7.92!PRRX1;;chr12:53614115..53614154,-!p1@RARG!0.94!42.89!RARG;;chr7:19157043..19157088,-!p2@TWIST1!0.94!20.03!TWIST1;;chr6:85474299..85474324,-!p1@TBX18!0.93!13.90!TBX18;;chr5:174151553..174151610,+!p1@MSX2!0.90!11.96!MSX2;;chr18:52969844..52969895,-!p27@TCF4!0.90!6.87!TCF4;;chr6:34204973..34204990,+!p4@HMGA1!0.89!94.30!HMGA1;;chr8:49833948..49833973,-!p2@SNAI2!0.89!44.69!SNAI2;;chr6:1312325..1312340,+!p1@FOXQ1!0.89!11.21!FOXQ1;;chr3:141121847..141121868,+!p5@ZBTB38!0.89!10.46!ZBTB38;;chr11:65687222..65687240,+!p7@DRAP1!0.89!8.82!DRAP1;;chr4:174451370..174451387,-!p1@HAND2!0.89!6.73!HAND2;;chr11:47279504..47279563,+!p1@NR1H3!0.88!15.54!NR1H3;;chr17:46687959..46688007,-!p2@HOXB7!0.88!9.27!HOXB7;;chr12:115122318..115122331,-!p2@TBX3!0.87!6.43!TBX3;;chr2:176994408..176994492,+!p1@HOXD8!0.87!6.43!HOXD8;;chr5:2751785..2751808,-!p2@IRX2!0.87!6.43!IRX2;;chr14:24837368..24837401,+!p1@NFATC4!0.86!15.24!NFATC4;;chr3:12329358..12329393,+!p3@PPARG!0.85!15.69!PPARG;;chr12:66218183..66218209,+!p4@HMGA2!0.85!12.11!HMGA2;;chr17:46688334..46688385,-!p1@HOXB7!0.85!9.12!HOXB7;;chr6:85473156..85473210,-!p2@TBX18!0.85!7.47!TBX18;;chr6:34204672..34204692,+!p1@HMGA1!0.84!720.04!HMGA1;;chr7:44143925..44143970,+!p1@AEBP1!0.83!138.39!AEBP1;;chr11:65667846..65667868,-!p1@FOSL1!0.82!159.61!FOSL1;;chr11:65687243..65687276,+!p8@DRAP1!0.82!7.77!DRAP1;;chr15:42749722..42749739,-!p2@ZFP106!0.81!10.31!ZFP106;;chr17:46675420..46675465,-!p3@HOXB6!0.81!6.43!HOXB6;;chr17:46675558..46675577,-!p2@HOXB6!0.80!5.38!HOXB6;;chr12:54380404..54380433,+!p3@HOXC10!0.80!5.38!HOXC10;;chr12:54402790..54402805,+!p2@HOXC8!0.80!5.38!HOXC8;;chr12:54422217..54422239,+!p3@HOXC6!0.80!5.38!HOXC6;;chr11:65687158..65687216,+!p4@DRAP1!0.79!32.43!DRAP1;;chr11:46299199..46299233,+!p1@CREB3L1!0.79!28.84!CREB3L1;;chr12:66218378..66218401,+!p6@HMGA2!0.79!8.37!HMGA2;;chr6:1389789..1389821,+!p1@FOXF2!0.79!7.32!FOXF2;;chr16:86600870..86600921,+!p2@FOXC2!0.79!5.23!FOXC2;;chr17:59477403..59477414,+!p4@TBX2!0.79!5.23!TBX2;;chr15:96874145..96874166,+!p7@NR2F2!0.78!10.16!NR2F2;;chr2:223163706..223163730,-!p1@PAX3!0.77!4.93!PAX3;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.77!4.93!HOXC5;;chr12:115121770..115121781,-!p4@TBX3!0.76!4.78!TBX3;;chr12:54379029..54379057,+!p2@HOXC10!0.76!4.78!HOXC10;;chr12:66218420..66218439,+!p12@HMGA2!0.76!4.78!HMGA2;;chr6:1389989..1390019,+!p2@FOXF2!0.76!4.78!FOXF2;;chr7:27192185..27192209,-!p1@HOXA3!0.76!4.78!HOXA3;;chr7:27205136..27205164,-!p1@HOXA9!0.76!4.78!HOXA9;;chr5:133450365..133450444,+!p1@TCF7!0.75!23.31!TCF7;;chr5:321810..321877,+!p1@AHRR!0.75!15.84!AHRR;;chr5:3595934..3595957,+!p2@IRX1!0.75!4.63!IRX1;;chr7:27224842..27224872,-!p1@HOXA11!0.75!4.63!HOXA11;;chr12:115121962..115121987,-!p1@TBX3!0.74!41.85!TBX3;;chr17:41622925..41622976,-!p3@ETV4!0.74!7.02!ETV4;;chr17:46682321..46682362,-!p1@HOXB6!0.74!4.48!HOXB6;;chr5:174151612..174151633,+!p2@MSX2!0.74!4.48!MSX2;;chr1:170632250..170632277,+!p7@PRRX1!0.74!4.48!PRRX1;;chr17:61919985..61920012,-!p3@SMARCD2!0.73!11.66!SMARCD2;;chr3:141105705..141105770,+!p4@ZBTB38!0.73!5.38!ZBTB38;;chr8:49833978..49833996,-!p1@SNAI2!0.72!98.34!SNAI2;;chr7:14029283..14029311,-!p1@ETV1!0.72!25.26!ETV1;;chr15:96874244..96874259,+!p5@NR2F2!0.72!11.21!NR2F2;;chr11:113930425..113930471,+!p1@ZBTB16!0.72!6.43!ZBTB16;;chr12:66218443..66218461,+!p8@HMGA2!0.72!5.68!HMGA2;;chr15:83953397..83953425,-!p1@BNC1!0.72!4.93!BNC1;;chr7:44143978..44143989,+!p2@AEBP1!0.71!8.07!AEBP1;;chr12:66218469..66218477,+!p16@HMGA2!0.71!4.18!HMGA2;;chr17:59477197..59477212,+!p2@TBX2!0.70!7.47!TBX2;;chr15:96875041..96875052,+!p17@NR2F2!0.70!6.13!NR2F2;;chr1:170632762..170632786,+!p13@PRRX1!0.70!4.04!PRRX1;;chr12:66218573..66218596,+!p7@HMGA2!0.69!6.13!HMGA2;;chr2:200322654..200322707,-!p2@SATB2!0.69!5.98!SATB2;;chr1:170632137..170632172,+!p10@PRRX1!0.69!3.89!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.69!3.89!PRRX1;;chr7:27224795..27224840,-!p2@HOXA11!0.69!3.89!HOXA11;;chr1:158979792..158979814,+!p2@IFI16!0.68!41.70!IFI16;;chr1:170633100..170633112,+!p19@PRRX1!0.68!3.74!PRRX1;;chr12:85673977..85674015,+!p1@ALX1!0.68!3.74!ALX1;;chr3:157823517..157823562,-!p1@SHOX2!0.67!4.04!SHOX2;;chr17:45810594..45810608,+!p1@TBX21!0.66!3.59!TBX21;;chr6:34205372..34205412,+!p5@HMGA1!0.65!20.33!HMGA1;;chr15:96876966..96877017,+!p12@NR2F2!0.65!5.23!NR2F2;;chr15:57511589..57511608,+!p4@TCF12!0.65!3.44!TCF12;;chr5:3595977..3595999,+!p1@IRX1!0.65!3.44!IRX1;;chr2:102091478..102091490,-!p3@RFX8!0.65!3.44!RFX8;;chr11:46299539..46299620,+!p2@CREB3L1!0.64!6.13!CREB3L1;;chr12:96588143..96588185,+!p1@ELK3!0.63!46.78!ELK3;;chr14:61116183..61116208,-!p1@SIX1!0.63!14.50!SIX1;;chr17:41623009..41623053,-!p4@ETV4!0.63!5.68!ETV4;;chr10:119303078..119303169,+!p2@EMX2!0.63!3.29!EMX2;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!0.63!3.29!POU3F3;;chr2:119604456..119604501,-!p2@EN1!0.63!3.29!EN1;;chr2:175199697..175199706,+!p2@SP9!0.63!3.29!SP9;;chr3:138665937..138665968,-!p1@FOXL2!0.63!3.29!FOXL2;;chr3:138665969..138665993,-!p2@FOXL2!0.63!3.29!FOXL2;;chr1:170632310..170632321,+!p15@PRRX1!0.63!3.29!PRRX1;;chr19:13134772..13134822,+!p2@NFIX!0.62!4.93!NFIX;;chrX:66763856..66763896,+!p1@AR!0.62!4.93!AR;;chr1:170633245..170633256,+!p14@PRRX1!0.62!3.14!PRRX1;;chr18:52969674..52969685,-!p24@TCF4!0.62!3.14!TCF4;;chr15:96874012..96874042,+!p2@NR2F2!0.61!32.88!NR2F2;;chr15:96873984..96873999,+!p3@NR2F2!0.60!26.30!NR2F2;;chr12:10875351..10875422,-!p4@CSDA!0.60!6.43!CSDA;;chr15:96874216..96874236,+!p13@NR2F2!0.60!5.08!NR2F2;;chr19:13135386..13135435,+!p4@NFIX!0.60!2.99!NFIX;;chr5:3595961..3595975,+!p3@IRX1!0.60!2.99!IRX1;;chr7:27213893..27213954,-!p1@HOXA10!0.60!2.99!HOXA10;;chr1:170632028..170632043,+!p20@PRRX1!0.60!2.99!PRRX1;;chr1:170632115..170632136,+!p9@PRRX1!0.60!2.99!PRRX1;;chr2:119605214..119605230,-!p1@EN1!0.60!2.99!EN1;;chr2:19558327..19558334,-!p2@OSR1!0.60!2.99!OSR1;;chr3:37217736..37217753,-!p2@LRRFIP2!0.59!14.20!LRRFIP2;;chr17:46691732..46691766,-!p4@HOXB8!0.58!2.84!HOXB8;;chr19:47523058..47523114,+!p1@NPAS1!0.58!2.84!NPAS1;;chr1:170632439..170632465,+!p11@PRRX1!0.58!2.84!PRRX1;;chr20:42543441..42543497,+!p1@TOX2!0.57!14.80!TOX2;;chr3:21792585..21792625,-!p2@ZNF385D!0.57!3.14!ZNF385D;;chr11:65688877..65688891,+!p13@DRAP1!0.57!2.69!DRAP1;;chr16:86612320..86612394,+!p1@FOXL1!0.57!2.69!FOXL1;;chr17:1958388..1958404,+!p1@HIC1!0.56!20.47!HIC1;;chr17:46622070..46622109,-!p1@HOXB2!0.56!6.73!HOXB2;;chr2:200323414..200323455,-!p1@SATB2!0.56!6.43!SATB2;;chr7:113726357..113726443,+!p1@FOXP2!0.56!5.08!FOXP2;;chr15:96869114..96869160,+!p11@NR2F2!0.56!3.89!NR2F2;;chr11:65686776..65686787,+!p9@DRAP1!0.56!3.29!DRAP1;;chr20:39946361..39946379,-!p2@ZHX3!0.55!9.12!ZHX3;;chr7:44143997..44144008,+!p3@AEBP1!0.55!3.44!AEBP1;;chr1:170632051..170632081,+!p16@PRRX1!0.55!2.54!PRRX1;;chr12:54402729..54402743,+!p3@HOXC8!0.55!2.54!HOXC8;;chr17:46675469..46675481,-!p4@HOXB6!0.55!2.54!HOXB6;;chr17:46690839..46690884,-!p1@HOXB8!0.55!2.54!HOXB8;;chr14:21566731..21566836,-!p1@ZNF219!0.54!33.18!ZNF219;;chr12:96588219..96588263,+!p2@ELK3!0.54!22.27!ELK3;;chr11:65686952..65686975,+!p5@DRAP1!0.54!16.89!DRAP1;;chr11:113930291..113930339,+!p2@ZBTB16!0.54!4.48!ZBTB16;;chr7:28448965..28448994,+!p2@CREB5!0.53!10.16!CREB5;;chr9:110250697..110250738,-!p2@KLF4!0.53!2.99!KLF4;;chr7:14028488..14028516,-!p2@ETV1!0.53!2.69!ETV1;;chr7:27196267..27196311,-!p1@HOXA7!0.53!2.39!HOXA7;;chr11:63684602..63684664,-!p1@RCOR2!0.51!5.23!RCOR2;;chr11:47279248..47279264,+!p3@NR1H3!0.51!2.69!NR1H3;;chr10:119302645..119302712,+!p3@EMX2!0.51!2.24!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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002551;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002620;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002067;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416 | |||
|ffid_belonging_in_development=CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor3.CNhs12028.11418-118F5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor3.CNhs12028.11418-118F5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor3.CNhs12028.11418-118F5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor3.CNhs12028.11418-118F5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor3.CNhs12028.11418-118F5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11418-118F5 | |id=FF:11418-118F5 | ||
|is_a=EFO:0002091;;FF:0000062 | |is_a=EFO:0002091;;FF:0000062 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12028 | |||
|library_id_phase_based=2:CNhs12028 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11418 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10012.GTGGCC.11418 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11418 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10012.GTGGCC.11418 | |||
|name=Fibroblast - Dermal, donor3 | |name=Fibroblast - Dermal, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12028,LSID837,release011,COMPLETED | |profile_hcage=CNhs12028,LSID837,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10012,,, | |profile_srnaseq=SRhi10012,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=118 | |rna_box=118 | ||
|rna_catalog_number=CA106-R10a | |rna_catalog_number=CA106-R10a | ||
| Line 57: | Line 82: | ||
|rna_tube_id=118F5 | |rna_tube_id=118F5 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10012.GTGGCC | |||
|sample_age=41 | |sample_age=41 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 79: | Line 106: | ||
|top_motifs=HES1:1.83834385974;ZNF238:1.73005566938;UFEwm:1.37930076922;NKX2-2,8:1.31157668937;RXR{A,B,G}:1.3030442279;GZF1:1.22264649942;HOX{A6,A7,B6,B7}:1.16661768855;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.09891148849;FOXD3:1.08739397061;ALX4:1.08387883677;GATA4:1.01297382537;HOX{A4,D4}:0.980756526747;XBP1:0.925983725271;NKX2-1,4:0.919909976041;ESR1:0.919108132843;PAX1,9:0.914927285924;EN1,2:0.856523745071;NR3C1:0.812827134727;KLF4:0.724481508619;AIRE:0.707230534292;STAT5{A,B}:0.697651733004;TOPORS:0.687333096102;FOXL1:0.648636829191;PAX8:0.631172620173;ZIC1..3:0.617036240818;TFCP2:0.584740029935;ZNF423:0.555635632213;IKZF1:0.510384356006;GFI1B:0.449762565482;FOXQ1:0.439838046538;MTF1:0.429031149826;SPZ1:0.408382583488;LHX3,4:0.401815747965;TAL1_TCF{3,4,12}:0.384550883359;AR:0.378146543413;HOX{A5,B5}:0.371175195019;ONECUT1,2:0.358060240678;TEAD1:0.355976424769;EGR1..3:0.335348998909;TP53:0.33404055979;HAND1,2:0.332944442992;ZBTB16:0.330804369081;PDX1:0.321810833235;TFAP4:0.300941800122;ZNF384:0.297715321806;ZBTB6:0.27328913878;NKX3-1:0.266640858288;YY1:0.259190162315;NFE2L1:0.235140253245;TLX1..3_NFIC{dimer}:0.234531262124;ATF6:0.230457983766;TEF:0.229974356525;NR6A1:0.20921615841;EVI1:0.209197113821;NFATC1..3:0.20279791263;PRDM1:0.202611076091;TFDP1:0.187858260616;PAX4:0.161141336077;NKX6-1,2:0.158256426113;ARID5B:0.155425769454;GTF2I:0.15270680561;TFAP2B:0.134423074608;SRF:0.127208035519;FOS_FOS{B,L1}_JUN{B,D}:0.113976502873;bHLH_family:0.113908031159;HIC1:0.091308686339;GLI1..3:0.0712795062688;EBF1:0.0550508251984;MYFfamily:0.0512515938395;PRRX1,2:0.043745794635;RREB1:0.0435914662165;HNF4A_NR2F1,2:0.0404789980078;PAX5:0.0398856554945;MYBL2:0.0393744622556;AHR_ARNT_ARNT2:0.0367377279477;HNF1A:0.0277281522679;REST:0.022012853738;POU3F1..4:0.0215082819001;DMAP1_NCOR{1,2}_SMARC:0.0164051539271;BACH2:0.0145527291453;NFE2L2:-0.0015725094413;NANOG{mouse}:-0.00654327310481;HSF1,2:-0.0137466843737;NR1H4:-0.0220247117504;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.034486641582;HBP1_HMGB_SSRP1_UBTF:-0.043874285651;GTF2A1,2:-0.0495523249439;SOX17:-0.0541683031652;LEF1_TCF7_TCF7L1,2:-0.0813071595143;PATZ1:-0.0960408396521;HLF:-0.0979707990315;TFAP2{A,C}:-0.108017506714;ESRRA:-0.108320202349;MZF1:-0.144322121965;NR5A1,2:-0.152386029468;CEBPA,B_DDIT3:-0.154300947842;DBP:-0.157489423712;MTE{core}:-0.165670343206;FOSL2:-0.168867518067;PPARG:-0.180742152288;HIF1A:-0.192686048392;FOXO1,3,4:-0.197348984737;MEF2{A,B,C,D}:-0.209364622204;MAFB:-0.213285362765;NHLH1,2:-0.216024453968;STAT2,4,6:-0.2244904944;POU1F1:-0.228791387333;PAX3,7:-0.242646276373;GCM1,2:-0.243259584527;XCPE1{core}:-0.250885973221;CDC5L:-0.251000220886;NKX2-3_NKX2-5:-0.252950808153;TBP:-0.265921386285;NKX3-2:-0.271119625563;ADNP_IRX_SIX_ZHX:-0.274964871213;FOXM1:-0.283457927028;NFKB1_REL_RELA:-0.28997872855;TGIF1:-0.291304203536;NFE2:-0.300987426233;CREB1:-0.308246063396;ZFP161:-0.325657738898;MYB:-0.328525404078;ZNF143:-0.334222904124;ZNF148:-0.341985122877;MED-1{core}:-0.37534669809;NFIX:-0.38815381279;SOX5:-0.39029096314;IRF1,2:-0.397818525522;RUNX1..3:-0.409790511942;RFX1:-0.414329188878;BPTF:-0.445535606881;HMGA1,2:-0.451220891586;POU6F1:-0.468416238299;GFI1:-0.475146036035;T:-0.475306078041;SPI1:-0.480874408276;HMX1:-0.492599143083;SP1:-0.495927635594;ELK1,4_GABP{A,B1}:-0.509016230973;E2F1..5:-0.51213509997;POU2F1..3:-0.539958836744;HOXA9_MEIS1:-0.564128998327;PAX2:-0.5659411374;BREu{core}:-0.567466842379;FOX{I1,J2}:-0.572125947011;ALX1:-0.574417376484;MAZ:-0.582304938107;LMO2:-0.583645318142;NRF1:-0.587327989102;FOXP3:-0.588718216284;TBX4,5:-0.595686235535;ATF2:-0.596854766252;CRX:-0.612226976445;RXRA_VDR{dimer}:-0.62072658562;SPIB:-0.631496767088;SREBF1,2:-0.65025427242;ATF5_CREB3:-0.666532813891;RFX2..5_RFXANK_RFXAP:-0.683642347635;ETS1,2:-0.69078754465;FOXP1:-0.694820547213;IKZF2:-0.696402497061;CUX2:-0.699110541502;ELF1,2,4:-0.700609089679;CDX1,2,4:-0.709971904345;FOX{D1,D2}:-0.711385536418;FOXA2:-0.731190918995;GATA6:-0.731776781124;IRF7:-0.752599896807;PITX1..3:-0.773490559934;SNAI1..3:-0.777230912979;RBPJ:-0.781296526238;OCT4_SOX2{dimer}:-0.803640007975;ATF4:-0.804361160274;NFIL3:-0.807754445124;ZEB1:-0.821129053397;PBX1:-0.823507779524;SMAD1..7,9:-0.829848355057;STAT1,3:-0.868120179007;TLX2:-0.924388340378;JUN:-0.949963827968;POU5F1:-0.988088922672;NFY{A,B,C}:-0.995930118986;MYOD1:-1.03261250276;SOX{8,9,10}:-1.06346600878;RORA:-1.1382094483;FOXN1:-1.15109319283;PAX6:-1.15485233455;VSX1,2:-1.23720071692;NANOG:-1.42084514199;SOX2:-1.44064563407;FOX{F1,F2,J1}:-1.55461535756;EP300:-1.68743867128 | |top_motifs=HES1:1.83834385974;ZNF238:1.73005566938;UFEwm:1.37930076922;NKX2-2,8:1.31157668937;RXR{A,B,G}:1.3030442279;GZF1:1.22264649942;HOX{A6,A7,B6,B7}:1.16661768855;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.09891148849;FOXD3:1.08739397061;ALX4:1.08387883677;GATA4:1.01297382537;HOX{A4,D4}:0.980756526747;XBP1:0.925983725271;NKX2-1,4:0.919909976041;ESR1:0.919108132843;PAX1,9:0.914927285924;EN1,2:0.856523745071;NR3C1:0.812827134727;KLF4:0.724481508619;AIRE:0.707230534292;STAT5{A,B}:0.697651733004;TOPORS:0.687333096102;FOXL1:0.648636829191;PAX8:0.631172620173;ZIC1..3:0.617036240818;TFCP2:0.584740029935;ZNF423:0.555635632213;IKZF1:0.510384356006;GFI1B:0.449762565482;FOXQ1:0.439838046538;MTF1:0.429031149826;SPZ1:0.408382583488;LHX3,4:0.401815747965;TAL1_TCF{3,4,12}:0.384550883359;AR:0.378146543413;HOX{A5,B5}:0.371175195019;ONECUT1,2:0.358060240678;TEAD1:0.355976424769;EGR1..3:0.335348998909;TP53:0.33404055979;HAND1,2:0.332944442992;ZBTB16:0.330804369081;PDX1:0.321810833235;TFAP4:0.300941800122;ZNF384:0.297715321806;ZBTB6:0.27328913878;NKX3-1:0.266640858288;YY1:0.259190162315;NFE2L1:0.235140253245;TLX1..3_NFIC{dimer}:0.234531262124;ATF6:0.230457983766;TEF:0.229974356525;NR6A1:0.20921615841;EVI1:0.209197113821;NFATC1..3:0.20279791263;PRDM1:0.202611076091;TFDP1:0.187858260616;PAX4:0.161141336077;NKX6-1,2:0.158256426113;ARID5B:0.155425769454;GTF2I:0.15270680561;TFAP2B:0.134423074608;SRF:0.127208035519;FOS_FOS{B,L1}_JUN{B,D}:0.113976502873;bHLH_family:0.113908031159;HIC1:0.091308686339;GLI1..3:0.0712795062688;EBF1:0.0550508251984;MYFfamily:0.0512515938395;PRRX1,2:0.043745794635;RREB1:0.0435914662165;HNF4A_NR2F1,2:0.0404789980078;PAX5:0.0398856554945;MYBL2:0.0393744622556;AHR_ARNT_ARNT2:0.0367377279477;HNF1A:0.0277281522679;REST:0.022012853738;POU3F1..4:0.0215082819001;DMAP1_NCOR{1,2}_SMARC:0.0164051539271;BACH2:0.0145527291453;NFE2L2:-0.0015725094413;NANOG{mouse}:-0.00654327310481;HSF1,2:-0.0137466843737;NR1H4:-0.0220247117504;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.034486641582;HBP1_HMGB_SSRP1_UBTF:-0.043874285651;GTF2A1,2:-0.0495523249439;SOX17:-0.0541683031652;LEF1_TCF7_TCF7L1,2:-0.0813071595143;PATZ1:-0.0960408396521;HLF:-0.0979707990315;TFAP2{A,C}:-0.108017506714;ESRRA:-0.108320202349;MZF1:-0.144322121965;NR5A1,2:-0.152386029468;CEBPA,B_DDIT3:-0.154300947842;DBP:-0.157489423712;MTE{core}:-0.165670343206;FOSL2:-0.168867518067;PPARG:-0.180742152288;HIF1A:-0.192686048392;FOXO1,3,4:-0.197348984737;MEF2{A,B,C,D}:-0.209364622204;MAFB:-0.213285362765;NHLH1,2:-0.216024453968;STAT2,4,6:-0.2244904944;POU1F1:-0.228791387333;PAX3,7:-0.242646276373;GCM1,2:-0.243259584527;XCPE1{core}:-0.250885973221;CDC5L:-0.251000220886;NKX2-3_NKX2-5:-0.252950808153;TBP:-0.265921386285;NKX3-2:-0.271119625563;ADNP_IRX_SIX_ZHX:-0.274964871213;FOXM1:-0.283457927028;NFKB1_REL_RELA:-0.28997872855;TGIF1:-0.291304203536;NFE2:-0.300987426233;CREB1:-0.308246063396;ZFP161:-0.325657738898;MYB:-0.328525404078;ZNF143:-0.334222904124;ZNF148:-0.341985122877;MED-1{core}:-0.37534669809;NFIX:-0.38815381279;SOX5:-0.39029096314;IRF1,2:-0.397818525522;RUNX1..3:-0.409790511942;RFX1:-0.414329188878;BPTF:-0.445535606881;HMGA1,2:-0.451220891586;POU6F1:-0.468416238299;GFI1:-0.475146036035;T:-0.475306078041;SPI1:-0.480874408276;HMX1:-0.492599143083;SP1:-0.495927635594;ELK1,4_GABP{A,B1}:-0.509016230973;E2F1..5:-0.51213509997;POU2F1..3:-0.539958836744;HOXA9_MEIS1:-0.564128998327;PAX2:-0.5659411374;BREu{core}:-0.567466842379;FOX{I1,J2}:-0.572125947011;ALX1:-0.574417376484;MAZ:-0.582304938107;LMO2:-0.583645318142;NRF1:-0.587327989102;FOXP3:-0.588718216284;TBX4,5:-0.595686235535;ATF2:-0.596854766252;CRX:-0.612226976445;RXRA_VDR{dimer}:-0.62072658562;SPIB:-0.631496767088;SREBF1,2:-0.65025427242;ATF5_CREB3:-0.666532813891;RFX2..5_RFXANK_RFXAP:-0.683642347635;ETS1,2:-0.69078754465;FOXP1:-0.694820547213;IKZF2:-0.696402497061;CUX2:-0.699110541502;ELF1,2,4:-0.700609089679;CDX1,2,4:-0.709971904345;FOX{D1,D2}:-0.711385536418;FOXA2:-0.731190918995;GATA6:-0.731776781124;IRF7:-0.752599896807;PITX1..3:-0.773490559934;SNAI1..3:-0.777230912979;RBPJ:-0.781296526238;OCT4_SOX2{dimer}:-0.803640007975;ATF4:-0.804361160274;NFIL3:-0.807754445124;ZEB1:-0.821129053397;PBX1:-0.823507779524;SMAD1..7,9:-0.829848355057;STAT1,3:-0.868120179007;TLX2:-0.924388340378;JUN:-0.949963827968;POU5F1:-0.988088922672;NFY{A,B,C}:-0.995930118986;MYOD1:-1.03261250276;SOX{8,9,10}:-1.06346600878;RORA:-1.1382094483;FOXN1:-1.15109319283;PAX6:-1.15485233455;VSX1,2:-1.23720071692;NANOG:-1.42084514199;SOX2:-1.44064563407;FOX{F1,F2,J1}:-1.55461535756;EP300:-1.68743867128 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11418-118F5;search_select_hide=table117:FF:11418-118F5 | |||
}} | }} | ||
Latest revision as of 17:59, 4 June 2020
| Name: | Fibroblast - Dermal, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12028 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12028
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12028
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.198 |
| 10 | 10 | 0.0474 |
| 100 | 100 | 0.312 |
| 101 | 101 | 0.911 |
| 102 | 102 | 0.686 |
| 103 | 103 | 0.495 |
| 104 | 104 | 0.625 |
| 105 | 105 | 0.0953 |
| 106 | 106 | 0.044 |
| 107 | 107 | 0.0637 |
| 108 | 108 | 0.0985 |
| 109 | 109 | 0.101 |
| 11 | 11 | 0.177 |
| 110 | 110 | 0.101 |
| 111 | 111 | 0.0512 |
| 112 | 112 | 0.206 |
| 113 | 113 | 0.015 |
| 114 | 114 | 0.0762 |
| 115 | 115 | 0.0801 |
| 116 | 116 | 0.0453 |
| 117 | 117 | 0.207 |
| 118 | 118 | 0.259 |
| 119 | 119 | 0.518 |
| 12 | 12 | 0.443 |
| 120 | 120 | 0.0775 |
| 121 | 121 | 0.519 |
| 122 | 122 | 0.0431 |
| 123 | 123 | 0.158 |
| 124 | 124 | 0.499 |
| 125 | 125 | 0.174 |
| 126 | 126 | 0.651 |
| 127 | 127 | 0.609 |
| 128 | 128 | 0.0456 |
| 129 | 129 | 0.565 |
| 13 | 13 | 0.575 |
| 130 | 130 | 0.665 |
| 131 | 131 | 0.607 |
| 132 | 132 | 0.298 |
| 133 | 133 | 0.381 |
| 134 | 134 | 0.4 |
| 135 | 135 | 0.385 |
| 136 | 136 | 0.931 |
| 137 | 137 | 0.227 |
| 138 | 138 | 0.899 |
| 139 | 139 | 0.518 |
| 14 | 14 | 0.145 |
| 140 | 140 | 0.382 |
| 141 | 141 | 0.684 |
| 142 | 142 | 0.388 |
| 143 | 143 | 0.195 |
| 144 | 144 | 0.708 |
| 145 | 145 | 0.0582 |
| 146 | 146 | 0.711 |
| 147 | 147 | 0.0555 |
| 148 | 148 | 0.0394 |
| 149 | 149 | 0.241 |
| 15 | 15 | 0.687 |
| 150 | 150 | 0.137 |
| 151 | 151 | 0.439 |
| 152 | 152 | 0.0166 |
| 153 | 153 | 0.269 |
| 154 | 154 | 0.667 |
| 155 | 155 | 0.234 |
| 156 | 156 | 0.268 |
| 157 | 157 | 0.745 |
| 158 | 158 | 0.13 |
| 159 | 159 | 0.491 |
| 16 | 16 | 0.0401 |
| 160 | 160 | 0.032 |
| 161 | 161 | 0.627 |
| 162 | 162 | 0.538 |
| 163 | 163 | 0.955 |
| 164 | 164 | 0.0233 |
| 165 | 165 | 0.678 |
| 166 | 166 | 0.842 |
| 167 | 167 | 0.45 |
| 168 | 168 | 0.599 |
| 169 | 169 | 0.023 |
| 17 | 17 | 0.291 |
| 18 | 18 | 0.0858 |
| 19 | 19 | 0.0312 |
| 2 | 2 | 0.587 |
| 20 | 20 | 0.667 |
| 21 | 21 | 0.00775 |
| 22 | 22 | 0.185 |
| 23 | 23 | 0.666 |
| 24 | 24 | 0.794 |
| 25 | 25 | 0.457 |
| 26 | 26 | 0.0995 |
| 27 | 27 | 0.235 |
| 28 | 28 | 0.179 |
| 29 | 29 | 0.119 |
| 3 | 3 | 0.242 |
| 30 | 30 | 0.987 |
| 31 | 31 | 0.608 |
| 32 | 32 | 2.18237e-5 |
| 33 | 33 | 0.397 |
| 34 | 34 | 0.806 |
| 35 | 35 | 0.628 |
| 36 | 36 | 0.233 |
| 37 | 37 | 0.0182 |
| 38 | 38 | 0.909 |
| 39 | 39 | 0.236 |
| 4 | 4 | 0.396 |
| 40 | 40 | 0.569 |
| 41 | 41 | 0.366 |
| 42 | 42 | 0.944 |
| 43 | 43 | 0.2 |
| 44 | 44 | 0.0218 |
| 45 | 45 | 0.754 |
| 46 | 46 | 0.0993 |
| 47 | 47 | 0.702 |
| 48 | 48 | 0.445 |
| 49 | 49 | 0.246 |
| 5 | 5 | 0.877 |
| 50 | 50 | 0.41 |
| 51 | 51 | 0.522 |
| 52 | 52 | 0.675 |
| 53 | 53 | 0.314 |
| 54 | 54 | 0.626 |
| 55 | 55 | 0.195 |
| 56 | 56 | 0.621 |
| 57 | 57 | 0.359 |
| 58 | 58 | 0.631 |
| 59 | 59 | 0.189 |
| 6 | 6 | 0.969 |
| 60 | 60 | 0.611 |
| 61 | 61 | 0.876 |
| 62 | 62 | 0.75 |
| 63 | 63 | 0.17 |
| 64 | 64 | 0.769 |
| 65 | 65 | 0.359 |
| 66 | 66 | 0.441 |
| 67 | 67 | 0.573 |
| 68 | 68 | 0.255 |
| 69 | 69 | 0.245 |
| 7 | 7 | 0.431 |
| 70 | 70 | 0.0969 |
| 71 | 71 | 0.129 |
| 72 | 72 | 0.537 |
| 73 | 73 | 0.00919 |
| 74 | 74 | 0.0176 |
| 75 | 75 | 0.115 |
| 76 | 76 | 0.602 |
| 77 | 77 | 0.0869 |
| 78 | 78 | 0.892 |
| 79 | 79 | 0.0345 |
| 8 | 8 | 0.00562 |
| 80 | 80 | 0.0212 |
| 81 | 81 | 0.422 |
| 82 | 82 | 0.732 |
| 83 | 83 | 0.191 |
| 84 | 84 | 0.425 |
| 85 | 85 | 0.135 |
| 86 | 86 | 0.942 |
| 87 | 87 | 0.139 |
| 88 | 88 | 0.245 |
| 89 | 89 | 0.303 |
| 9 | 9 | 0.421 |
| 90 | 90 | 0.598 |
| 91 | 91 | 0.365 |
| 92 | 92 | 0.107 |
| 93 | 93 | 0.995 |
| 94 | 94 | 0.315 |
| 95 | 95 | 0.0266 |
| 96 | 96 | 0.284 |
| 97 | 97 | 0.639 |
| 98 | 98 | 0.318 |
| 99 | 99 | 0.0151 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12028
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)
0002551 (fibroblast of dermis)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0010317 (germ layer / neural crest derived structure)
0002067 (dermis)
0002416 (integumental system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000062 (human dermal fibroblast sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
