FF:11418-118F5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004749 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004749 | ||
|accession_numbers=CAGE;DRX008256;DRR009128;DRZ000553;DRZ001938;DRZ011903;DRZ013288 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037198;DRR041564;DRZ007206 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0010317,UBERON:0002067,UBERON:0002416 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620,CL:0002551 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000250,FF:0000001,FF:0000062 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor3.CNhs12028.11418-118F5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor3.CNhs12028.11418-118F5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor3.CNhs12028.11418-118F5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor3.CNhs12028.11418-118F5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor3.CNhs12028.11418-118F5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11418-118F5 | |id=FF:11418-118F5 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000062 | ||
|is_obsolete= | |||
|library_id=CNhs12028 | |||
|library_id_phase_based=2:CNhs12028 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11418 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10012.GTGGCC.11418 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11418 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10012.GTGGCC.11418 | |||
|name=Fibroblast - Dermal, donor3 | |name=Fibroblast - Dermal, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12028,LSID837,release011,COMPLETED | |profile_hcage=CNhs12028,LSID837,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10012,,, | |profile_srnaseq=SRhi10012,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0302447930437535,0,0,0.060489586087507,0,0.0820353792536273,0,-0.0609486218046087,0.105197312867629,0,0,0,0,0,0,0,0,0,0,0,0.060489586087507,0,0.832014685767578,0,0.0567874172349485,0,0,0,0.299023314831006,0,0,0.109396819561151,0,0,0,0,0,0,0,0,0,0,0,0,0.410067895519155,0.0659377238089784,0,0,0.060489586087507,0,0,0,0,-0.0242150211128343,0,0,0,0.160872336741618,0,0.0377572661460674,0.060489586087507,0.349138305919461,0,0,0.0162312072568003,0,0,0,0,0,0,0,0.060489586087507,0.242353409340013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122859944306554,0.0302447930437535,0,0,-0.0584468268118252,0.12746479271391,0,0.203520982275036,0.0302447930437535,0,-0.0980353512377064,0.136907105301274,0,0,0,0,0,0,0,0,0,0,0.0302447930437535,0,0,0,0,0,0,0.102117011627071,0,0,0,0.0633144030981992,0.235050489836636,0,0,0.060489586087507,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0.060489586087507,0,0,0.203520982275036,0,0,0.0308179561970526,0.0302447930437535,-0.360511384282111,-0.143515142523472,0.0302447930437535,0,0.307603756981319,0,0.113574834469897,0,0,0.060489586087507,0,0.060489586087507,0.242353409340013,0,0.472741296301534,0,0.0631622828805823,0.060489586087507,0,0,0,0,-0.2449826448109,0,0.081130372864898,-0.0683442610773682,0,0.060489586087507,0,0,0.283578066999108,0,0.0826414984812954,-0.0827201683234173,-0.221611588102807,0.0973006831309385,-0.055712496781182,0,0,0,0.235144997077313,0.215643496195324,0,0,0.0102254324293976,0.022171363714377,0,0,-0.230172244810017,0,0.354795823300796,0.135132049145337,0,0.328026518935301,0,0,0,0,0.101760491137518,0,0,0.060489586087507,0.060489586087507,0,0,0.352684426682106,-0.0846351873389555,0.0195320725668627,0,0,0,-0.111553929777911,0,0.0112785956722954,0.84922511999961,0.254273911088115,-0.072198306437069,-0.248763587072472,0,-0.302389727009913,0.0324970796810824,-0.446154461367776,0.0499348870595087,0.094951559968875,0.457138995711593,0.00473933765261353,0.162169476121932,0.00826447815179254,-0.0234634018894802,0.134617642961478,-0.0216356030861839,0.33170203436692,0.0549438338928914,0,0,0.113574834469897,-0.1981084469367,0,0,-0.0931335033777105,-0.103039270643573,-0.025458088656572,0.0139360801849395,0.0241727733234247,0.208500805525885,0.509160491667087,0.293296289827505,0.0292424908437683,0.229354995132344,0,0.060489586087507,-0.087969206950705,-0.0490659486731631,0.134367022932807,-0.0487908328779501,0.035539224273207,-0.241624052470967,0.209652570405249,0.087032210278702,-0.023402855137804,0.0974021516916275,0,0.160872336741618,0.0534644774992001,0,0,0,0,0.060489586087507,0.0154754446193632,-0.197941008843523,-0.0293345792805088,0,-0.155046314193504,0,0.00314450127446309,0,-0.0707577008838067,0.266594833274453,-0.125219299833776,0.100662284486244,0,0.1527664468451,0.0540708737759868,0.105370187920723,0.194439999340313,-0.0584468268118252,-0.163436593475002,-0.178029951803539,-0.00721679522749286,0.146662245637495,0,0.115394149799748,0.0208531759667838,0.15242953225952,-0.0952206397625418,0,0.0377035627079564,0.00981356148091633,0.131283896559398,0,-0.200797705040875,0,-0.279104967412771,-0.0716681565879818,-0.23576839230565,0.134593406609065,0,-0.000861997767806044,-0.510134106291357,0,0.115492218252508,0.0104985831371633,0,0.576686883563913,0.181729206176892,-0.211650427864589,-0.006984172497923,0,0.227590244146841,0,0,0.0660139548237386,0.0425207937182283,0,-0.162711258778729,-0.0249254223544136,0.19032106607051,-0.115971073434934,0.549080246704634,0,-0.176934743107466,0.00167461137440261,0,-0.208946852718967,0.060489586087507,-0.458910987217015,0.143654869612307,0.0322056134736024,0.322514352216544,0,0,0.0648256433748378,0,0.091641073468761,0,0,0.526379122606547,0.22492302119651,0,0,0.160872336741618,0,0,0,0.060489586087507,0,0,0,0,-0.135969027283387,0.135445695900383,0,0.169063897694449,0,0,0,0,0.113574834469897,0.0314662215252735,0,0.661506805504799,0.203016634382737,0.0344946512111579,0.154979415806197,0,0,0,0,0.445783402951325,-0.0896617276248265,0.203520982275036,-0.0713731204101247,0,0,0,0.060489586087507,-0.0256514037017043,0,0,0,0,0.283820677132979,0.0193472418165087,0,0,0,0.21332462451504,0,0,0,0.0110276574731,-0.145997418875228,0,0,0.648723084625576,0,0.091058538304643,0.0319929549230558,0,0.0981060630846039,0.118964130821052,-0.58256637374991,0,0.060489586087507,-0.100474795048269,0,0.0131079927481161,-0.174001222153598,0,0.060489586087507,0,0,0,0,0,0,0.060489586087507,0.127236621786887,0.087032210278702,0,0,0,0.060489586087507,0,0,0.060489586087507,0,0,0,0.0556457967455901,0.376541538226748,0.0714987412137336,0,0,0,0,0,0,0.203456961249367,-0.184562715572595,0,0,0,0,0.060489586087507,0.242353409340013,0,0,0.0589247602835443,0.0302447930437535,0,0.383565559422173,0,0,0.349138305919461,0,0,0,0.060489586087507,0.149905039647751,0,0,-0.163787297723617,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0802018962395883,-0.0609486218046087,0,0,0,0,0,0,0,0.0667178359805526,0,0.060489586087507,0,0,0.0469879630326409,0,0,0,0.00877844968074082,0,0.0820353792536273,0.060489586087507,0,0.060489586087507,0,0,0.0176154270963104,0,0,0,0,0,0,0,0,0,0,0,0.185074953872642,0,0,0,0.662801211017237,0,0.226115554175036,0.0376694721678326,0,0,0.148424127220316,0,0,0,0,0,0,-0.00109563098477355,0.060489586087507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.00458051024996619,0,0,0,0,0.422250853844724,0,0,0.299023314831006,0,0.0302447930437535,-0.0920328098005262,0,0,0,0,0.370149907745283,0,-0.0726570937403145,0.0296655182367325,0.0146123200821384,0,0,0.060489586087507,0.101082181322409,0.160872336741618,0,0.0379813195542786,0.060489586087507,0.303372520326381,0,0,0,0,0,0,0,0,0.060489586087507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.060489586087507,0.832014685767578,0,0,0,0,0,0,0,0,0,0,0,0,0.170775567093322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.060489586087507,0,0,0,0,0,0,0,-0.00376657023166302,0,0,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| |||
|rna_box=118 | |rna_box=118 | ||
|rna_catalog_number=CA106-R10a | |rna_catalog_number=CA106-R10a | ||
| Line 56: | Line 82: | ||
|rna_tube_id=118F5 | |rna_tube_id=118F5 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10012.GTGGCC | |||
|sample_age=41 | |sample_age=41 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.19199978905893e-232!GO:0005737;cytoplasm;2.99628636935871e-197!GO:0043231;intracellular membrane-bound organelle;5.21378157236547e-183!GO:0043227;membrane-bound organelle;1.13547001732115e-182!GO:0043226;organelle;5.05041572199381e-180!GO:0043229;intracellular organelle;1.00749625848202e-179!GO:0044444;cytoplasmic part;4.61427754574868e-148!GO:0044422;organelle part;9.76050925730395e-134!GO:0044446;intracellular organelle part;2.30419346926008e-132!GO:0032991;macromolecular complex;2.9467373871782e-95!GO:0030529;ribonucleoprotein complex;1.88576967913805e-90!GO:0044237;cellular metabolic process;6.40900336084738e-88!GO:0044238;primary metabolic process;2.99181750010069e-87!GO:0005739;mitochondrion;1.95178667124111e-81!GO:0043170;macromolecule metabolic process;2.52356107707973e-75!GO:0043233;organelle lumen;6.83441295848074e-73!GO:0031974;membrane-enclosed lumen;6.83441295848074e-73!GO:0005515;protein binding;1.06333435494635e-67!GO:0003723;RNA binding;7.30267399505668e-65!GO:0044428;nuclear part;1.12096645013311e-64!GO:0005634;nucleus;1.56143640946539e-61!GO:0005840;ribosome;1.9929957307902e-57!GO:0031090;organelle membrane;7.9106659018858e-56!GO:0044429;mitochondrial part;1.08665731929182e-53!GO:0006412;translation;5.1076574734629e-53!GO:0009058;biosynthetic process;8.49542676303703e-52!GO:0019538;protein metabolic process;5.93871461028711e-50!GO:0003735;structural constituent of ribosome;2.17119827618868e-49!GO:0006396;RNA processing;6.82275538261851e-48!GO:0044249;cellular biosynthetic process;4.93047067283932e-46!GO:0043234;protein complex;1.58469957526321e-45!GO:0044260;cellular macromolecule metabolic process;9.47733155552344e-45!GO:0031967;organelle envelope;1.3364380810859e-44!GO:0044267;cellular protein metabolic process;3.23760858271967e-44!GO:0031975;envelope;3.42769165021556e-44!GO:0009059;macromolecule biosynthetic process;3.28363058536598e-43!GO:0033279;ribosomal subunit;1.17077132234981e-42!GO:0005829;cytosol;2.45421780364568e-42!GO:0015031;protein transport;1.00098930317276e-41!GO:0016043;cellular component organization and biogenesis;5.77935433368828e-41!GO:0033036;macromolecule localization;1.97007214463571e-40!GO:0031981;nuclear lumen;9.99756569710726e-40!GO:0010467;gene expression;6.49492156728202e-39!GO:0043283;biopolymer metabolic process;1.34589841061771e-38!GO:0045184;establishment of protein localization;1.75401299842005e-38!GO:0008104;protein localization;8.56303543293873e-38!GO:0005740;mitochondrial envelope;1.39179653298654e-34!GO:0016071;mRNA metabolic process;5.70566401790731e-34!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.0615589083844e-34!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.91732305413145e-33!GO:0031966;mitochondrial membrane;2.01583239527124e-32!GO:0008380;RNA splicing;3.85579408465201e-32!GO:0046907;intracellular transport;1.16859670213986e-31!GO:0019866;organelle inner membrane;1.47359751995774e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.50678428280618e-30!GO:0005743;mitochondrial inner membrane;4.60912821327519e-29!GO:0006397;mRNA processing;7.60261679933866e-29!GO:0065003;macromolecular complex assembly;6.79150706830216e-28!GO:0006886;intracellular protein transport;2.7853245754534e-27!GO:0006996;organelle organization and biogenesis;1.18003036825699e-26!GO:0022607;cellular component assembly;4.87119815392673e-25!GO:0043228;non-membrane-bound organelle;1.66898699129186e-24!GO:0043232;intracellular non-membrane-bound organelle;1.66898699129186e-24!GO:0044445;cytosolic part;6.00015298533454e-24!GO:0044455;mitochondrial membrane part;4.27589051864531e-23!GO:0005654;nucleoplasm;4.27589051864531e-23!GO:0006119;oxidative phosphorylation;4.59064553304479e-23!GO:0015934;large ribosomal subunit;5.7029892451664e-23!GO:0031980;mitochondrial lumen;6.33797606992879e-23!GO:0005759;mitochondrial matrix;6.33797606992879e-23!GO:0005681;spliceosome;1.00463426736156e-22!GO:0012505;endomembrane system;1.23920036852499e-21!GO:0015935;small ribosomal subunit;9.57792068284008e-21!GO:0006457;protein folding;3.17630064274179e-20!GO:0005783;endoplasmic reticulum;5.66596693785107e-20!GO:0051649;establishment of cellular localization;3.44870267644745e-19!GO:0051186;cofactor metabolic process;4.06711322485368e-19!GO:0051641;cellular localization;4.20470919354266e-19!GO:0000166;nucleotide binding;5.79621152348919e-19!GO:0006259;DNA metabolic process;7.49191579874625e-19!GO:0005730;nucleolus;7.77704093098736e-19!GO:0044451;nucleoplasm part;1.68659749871994e-18!GO:0048770;pigment granule;2.13504321375965e-18!GO:0042470;melanosome;2.13504321375965e-18!GO:0005746;mitochondrial respiratory chain;2.67398600629221e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.52551713233402e-18!GO:0016462;pyrophosphatase activity;5.08585701076218e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;6.38669936055269e-18!GO:0003676;nucleic acid binding;6.86977633758452e-18!GO:0022618;protein-RNA complex assembly;1.16197031512363e-17!GO:0017111;nucleoside-triphosphatase activity;4.52903506224084e-17!GO:0044432;endoplasmic reticulum part;4.66065431335302e-17!GO:0016874;ligase activity;8.47413790998622e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.03006584537264e-16!GO:0043285;biopolymer catabolic process;2.26098310761605e-16!GO:0000502;proteasome complex (sensu Eukaryota);2.36582259087968e-16!GO:0005761;mitochondrial ribosome;2.37792469136439e-16!GO:0000313;organellar ribosome;2.37792469136439e-16!GO:0042254;ribosome biogenesis and assembly;3.65017452216951e-16!GO:0005794;Golgi apparatus;4.59140014849967e-16!GO:0044265;cellular macromolecule catabolic process;6.15588166466567e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.28741979577435e-16!GO:0008135;translation factor activity, nucleic acid binding;7.08637385907897e-16!GO:0050136;NADH dehydrogenase (quinone) activity;1.20099571370758e-15!GO:0003954;NADH dehydrogenase activity;1.20099571370758e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.20099571370758e-15!GO:0016070;RNA metabolic process;2.03568787597519e-15!GO:0009057;macromolecule catabolic process;2.69419230901495e-15!GO:0044248;cellular catabolic process;3.65198572934454e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;8.49785135445643e-15!GO:0008134;transcription factor binding;1.03979318743127e-14!GO:0006512;ubiquitin cycle;1.18402289935859e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.23582023650648e-14!GO:0006732;coenzyme metabolic process;1.25716622270157e-14!GO:0019941;modification-dependent protein catabolic process;1.46500700178512e-14!GO:0043632;modification-dependent macromolecule catabolic process;1.46500700178512e-14!GO:0006511;ubiquitin-dependent protein catabolic process;1.5698733254985e-14!GO:0044257;cellular protein catabolic process;2.1905099021495e-14!GO:0006605;protein targeting;3.02865364268192e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.26672185313072e-14!GO:0030163;protein catabolic process;7.19863753754377e-14!GO:0042775;organelle ATP synthesis coupled electron transport;7.37600671515659e-14!GO:0042773;ATP synthesis coupled electron transport;7.37600671515659e-14!GO:0030964;NADH dehydrogenase complex (quinone);7.37600671515659e-14!GO:0045271;respiratory chain complex I;7.37600671515659e-14!GO:0005747;mitochondrial respiratory chain complex I;7.37600671515659e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.24200405454187e-13!GO:0017076;purine nucleotide binding;3.13010314137156e-13!GO:0051082;unfolded protein binding;4.74987259593314e-13!GO:0048193;Golgi vesicle transport;5.51740083120611e-13!GO:0009055;electron carrier activity;1.05225436514711e-12!GO:0032553;ribonucleotide binding;1.39668086487033e-12!GO:0032555;purine ribonucleotide binding;1.39668086487033e-12!GO:0007049;cell cycle;1.58203501774056e-12!GO:0003743;translation initiation factor activity;2.32620799373136e-12!GO:0005793;ER-Golgi intermediate compartment;2.87276858303758e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.83374155111498e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;5.80178742162216e-12!GO:0000375;RNA splicing, via transesterification reactions;5.80178742162216e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.80178742162216e-12!GO:0006399;tRNA metabolic process;9.17390042670457e-12!GO:0005789;endoplasmic reticulum membrane;9.79688037709737e-12!GO:0043412;biopolymer modification;9.81434105010475e-12!GO:0009259;ribonucleotide metabolic process;1.28814897950227e-11!GO:0016192;vesicle-mediated transport;1.32239928956311e-11!GO:0006163;purine nucleotide metabolic process;1.37394651301905e-11!GO:0006413;translational initiation;1.56275854092068e-11!GO:0005635;nuclear envelope;2.54909089530625e-11!GO:0009150;purine ribonucleotide metabolic process;6.13849213945795e-11!GO:0012501;programmed cell death;8.98468268631286e-11!GO:0006974;response to DNA damage stimulus;9.11672778127945e-11!GO:0006364;rRNA processing;1.01816618968323e-10!GO:0006164;purine nucleotide biosynthetic process;1.09224681387586e-10!GO:0006915;apoptosis;1.60134817164373e-10!GO:0016072;rRNA metabolic process;1.81335873589939e-10!GO:0006446;regulation of translational initiation;1.92225599503285e-10!GO:0016491;oxidoreductase activity;2.1765557787406e-10!GO:0031965;nuclear membrane;2.25416927756872e-10!GO:0009260;ribonucleotide biosynthetic process;2.57118778638664e-10!GO:0006464;protein modification process;3.39193863229375e-10!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.7387919685294e-10!GO:0030554;adenyl nucleotide binding;4.24361914287872e-10!GO:0009152;purine ribonucleotide biosynthetic process;4.55789556569053e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;7.67347343265016e-10!GO:0005524;ATP binding;8.01337478720163e-10!GO:0051188;cofactor biosynthetic process;9.20941931999093e-10!GO:0008219;cell death;1.13570629849023e-09!GO:0016265;death;1.13570629849023e-09!GO:0022402;cell cycle process;1.2962516080605e-09!GO:0032559;adenyl ribonucleotide binding;1.33963481411196e-09!GO:0044453;nuclear membrane part;1.50107290452561e-09!GO:0009056;catabolic process;1.50830299398161e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.73619640184872e-09!GO:0003712;transcription cofactor activity;2.73669595503069e-09!GO:0009141;nucleoside triphosphate metabolic process;2.74571195059758e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.96880084128632e-09!GO:0009144;purine nucleoside triphosphate metabolic process;2.96880084128632e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.28797112925972e-09!GO:0048523;negative regulation of cellular process;5.87333165055616e-09!GO:0016604;nuclear body;6.11177669555198e-09!GO:0009060;aerobic respiration;6.59288115341253e-09!GO:0007005;mitochondrion organization and biogenesis;7.1431893411079e-09!GO:0008565;protein transporter activity;8.86952208639899e-09!GO:0008639;small protein conjugating enzyme activity;1.01057878201059e-08!GO:0006913;nucleocytoplasmic transport;1.13434214312069e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.2276727514164e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.2276727514164e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.2276727514164e-08!GO:0006281;DNA repair;1.23271110279427e-08!GO:0005768;endosome;1.31685695295297e-08!GO:0009117;nucleotide metabolic process;1.32312987035412e-08!GO:0000278;mitotic cell cycle;1.48225625948944e-08!GO:0015986;ATP synthesis coupled proton transport;1.67206754983746e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.67206754983746e-08!GO:0045333;cellular respiration;1.81197951688583e-08!GO:0046034;ATP metabolic process;1.96047823315944e-08!GO:0051169;nuclear transport;2.13652869340577e-08!GO:0043038;amino acid activation;2.13652869340577e-08!GO:0006418;tRNA aminoacylation for protein translation;2.13652869340577e-08!GO:0043039;tRNA aminoacylation;2.13652869340577e-08!GO:0004842;ubiquitin-protein ligase activity;2.26404817820485e-08!GO:0042623;ATPase activity, coupled;2.31609916358113e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.59228421796658e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.59228421796658e-08!GO:0015078;hydrogen ion transmembrane transporter activity;2.63938168943607e-08!GO:0019787;small conjugating protein ligase activity;3.01190469954649e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.35078305352145e-08!GO:0016887;ATPase activity;3.61590747297466e-08!GO:0006461;protein complex assembly;4.33108899115682e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.40710363669228e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.40710363669228e-08!GO:0017038;protein import;4.55206388761067e-08!GO:0019829;cation-transporting ATPase activity;4.60375786882783e-08!GO:0030120;vesicle coat;4.79135244097338e-08!GO:0030662;coated vesicle membrane;4.79135244097338e-08!GO:0006888;ER to Golgi vesicle-mediated transport;4.92426350566023e-08!GO:0006366;transcription from RNA polymerase II promoter;5.16210049275445e-08!GO:0009719;response to endogenous stimulus;5.39947298468788e-08!GO:0030532;small nuclear ribonucleoprotein complex;5.41133902696751e-08!GO:0065002;intracellular protein transport across a membrane;5.41133902696751e-08!GO:0044431;Golgi apparatus part;5.66782670054043e-08!GO:0043687;post-translational protein modification;6.38968613093613e-08!GO:0003924;GTPase activity;8.28861933052309e-08!GO:0005788;endoplasmic reticulum lumen;8.85360515192474e-08!GO:0009108;coenzyme biosynthetic process;1.21128913899463e-07!GO:0051246;regulation of protein metabolic process;1.27342630736086e-07!GO:0005643;nuclear pore;1.28485262451638e-07!GO:0016740;transferase activity;1.57167543983266e-07!GO:0048475;coated membrane;1.97564310472139e-07!GO:0030117;membrane coat;1.97564310472139e-07!GO:0006091;generation of precursor metabolites and energy;1.97564310472139e-07!GO:0006099;tricarboxylic acid cycle;2.00924212185146e-07!GO:0046356;acetyl-CoA catabolic process;2.00924212185146e-07!GO:0000074;regulation of progression through cell cycle;2.23421168173842e-07!GO:0051726;regulation of cell cycle;2.50694123254161e-07!GO:0048519;negative regulation of biological process;2.62572410464188e-07!GO:0006754;ATP biosynthetic process;2.62572410464188e-07!GO:0006753;nucleoside phosphate metabolic process;2.62572410464188e-07!GO:0016853;isomerase activity;2.94608704315726e-07!GO:0051187;cofactor catabolic process;3.0965325978001e-07!GO:0016881;acid-amino acid ligase activity;3.50458672469403e-07!GO:0016607;nuclear speck;4.1167435650239e-07!GO:0016469;proton-transporting two-sector ATPase complex;4.51752611745162e-07!GO:0006260;DNA replication;4.5528206271777e-07!GO:0006084;acetyl-CoA metabolic process;4.5528206271777e-07!GO:0005839;proteasome core complex (sensu Eukaryota);4.80677449558933e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;5.21863849479569e-07!GO:0009109;coenzyme catabolic process;5.54065735036382e-07!GO:0044440;endosomal part;5.82135675641065e-07!GO:0010008;endosome membrane;5.82135675641065e-07!GO:0005694;chromosome;6.98136265289383e-07!GO:0050794;regulation of cellular process;8.28049798538796e-07!GO:0045259;proton-transporting ATP synthase complex;8.31995979293373e-07!GO:0008654;phospholipid biosynthetic process;8.69829332147059e-07!GO:0051276;chromosome organization and biogenesis;9.10980627537581e-07!GO:0004386;helicase activity;9.33169081530373e-07!GO:0006916;anti-apoptosis;1.00579387488519e-06!GO:0008026;ATP-dependent helicase activity;1.10484917604389e-06!GO:0042981;regulation of apoptosis;1.17432046962143e-06!GO:0006323;DNA packaging;1.19958259347311e-06!GO:0046930;pore complex;1.19958259347311e-06!GO:0043566;structure-specific DNA binding;1.32336412406948e-06!GO:0043067;regulation of programmed cell death;1.41417731031744e-06!GO:0005762;mitochondrial large ribosomal subunit;1.65814700105065e-06!GO:0000315;organellar large ribosomal subunit;1.65814700105065e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.84242262436337e-06!GO:0006752;group transfer coenzyme metabolic process;2.08593745294489e-06!GO:0003697;single-stranded DNA binding;2.30806496617385e-06!GO:0000139;Golgi membrane;2.30846394512334e-06!GO:0005770;late endosome;2.61420239562806e-06!GO:0065004;protein-DNA complex assembly;2.80992465032335e-06!GO:0005773;vacuole;2.82583449677809e-06!GO:0050657;nucleic acid transport;3.54400735542493e-06!GO:0051236;establishment of RNA localization;3.54400735542493e-06!GO:0050658;RNA transport;3.54400735542493e-06!GO:0006403;RNA localization;3.91560283862361e-06!GO:0004298;threonine endopeptidase activity;4.06731027269539e-06!GO:0016023;cytoplasmic membrane-bound vesicle;4.4981105921755e-06!GO:0005525;GTP binding;4.54411790911669e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.61345442182154e-06!GO:0031988;membrane-bound vesicle;5.09302380617577e-06!GO:0016779;nucleotidyltransferase activity;5.25255554532124e-06!GO:0000151;ubiquitin ligase complex;6.43484023080134e-06!GO:0005667;transcription factor complex;6.69165399158226e-06!GO:0019867;outer membrane;7.40805249693357e-06!GO:0016564;transcription repressor activity;7.58835423508104e-06!GO:0016787;hydrolase activity;7.60792829487689e-06!GO:0045454;cell redox homeostasis;7.84562393658726e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;8.08542323986143e-06!GO:0008610;lipid biosynthetic process;8.11411238063758e-06!GO:0016859;cis-trans isomerase activity;8.37288375929092e-06!GO:0044427;chromosomal part;8.78467536711253e-06!GO:0043069;negative regulation of programmed cell death;8.82860635540716e-06!GO:0032446;protein modification by small protein conjugation;9.20273382661947e-06!GO:0031968;organelle outer membrane;9.4212952692314e-06!GO:0016567;protein ubiquitination;9.51219492814376e-06!GO:0031324;negative regulation of cellular metabolic process;9.74215869550577e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;9.933219780343e-06!GO:0000245;spliceosome assembly;1.05994764896021e-05!GO:0043066;negative regulation of apoptosis;1.07202035913256e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.08533174951846e-05!GO:0000087;M phase of mitotic cell cycle;1.35722149311899e-05!GO:0031252;leading edge;1.35757178578828e-05!GO:0016126;sterol biosynthetic process;1.64980704557343e-05!GO:0007067;mitosis;1.86337073797271e-05!GO:0000323;lytic vacuole;1.87242467715417e-05!GO:0005764;lysosome;1.87242467715417e-05!GO:0005798;Golgi-associated vesicle;1.99054440714067e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.27672757342972e-05!GO:0006333;chromatin assembly or disassembly;2.43574264934909e-05!GO:0000785;chromatin;3.23697902889376e-05!GO:0031982;vesicle;3.39592875334833e-05!GO:0015980;energy derivation by oxidation of organic compounds;3.44917292586995e-05!GO:0006613;cotranslational protein targeting to membrane;3.5640984320395e-05!GO:0005741;mitochondrial outer membrane;3.61624806303665e-05!GO:0031410;cytoplasmic vesicle;3.66538255879918e-05!GO:0051170;nuclear import;3.89276600825886e-05!GO:0032561;guanyl ribonucleotide binding;3.9190834171343e-05!GO:0019001;guanyl nucleotide binding;3.9190834171343e-05!GO:0022403;cell cycle phase;3.98865476222961e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.10126779023632e-05!GO:0005048;signal sequence binding;4.16237069693843e-05!GO:0003713;transcription coactivator activity;4.16237069693843e-05!GO:0046474;glycerophospholipid biosynthetic process;4.51671488363924e-05!GO:0000314;organellar small ribosomal subunit;4.73102125799673e-05!GO:0005763;mitochondrial small ribosomal subunit;4.73102125799673e-05!GO:0016563;transcription activator activity;5.20728734981194e-05!GO:0003714;transcription corepressor activity;5.37392289325197e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;5.85614166076751e-05!GO:0009165;nucleotide biosynthetic process;5.98133324382053e-05!GO:0005769;early endosome;6.13149295309577e-05!GO:0045786;negative regulation of progression through cell cycle;6.48820518588535e-05!GO:0003899;DNA-directed RNA polymerase activity;6.6380683368193e-05!GO:0006793;phosphorus metabolic process;7.21533660962665e-05!GO:0006796;phosphate metabolic process;7.21533660962665e-05!GO:0006606;protein import into nucleus;7.46456010470352e-05!GO:0009892;negative regulation of metabolic process;7.70731655243928e-05!GO:0043021;ribonucleoprotein binding;7.76427478363915e-05!GO:0051028;mRNA transport;8.74558392035606e-05!GO:0005905;coated pit;8.76805632097419e-05!GO:0030133;transport vesicle;0.000104823590829909!GO:0030867;rough endoplasmic reticulum membrane;0.000104905957522309!GO:0046467;membrane lipid biosynthetic process;0.000114439660575508!GO:0008033;tRNA processing;0.000121984245663235!GO:0033116;ER-Golgi intermediate compartment membrane;0.000126892042322042!GO:0043623;cellular protein complex assembly;0.000152735986771047!GO:0006839;mitochondrial transport;0.000161309472191929!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00017316646594779!GO:0006626;protein targeting to mitochondrion;0.000180249849283131!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000183710992198167!GO:0016481;negative regulation of transcription;0.000189279434333818!GO:0051301;cell division;0.000192626942340161!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000192626942340161!GO:0050789;regulation of biological process;0.000208418911206186!GO:0043681;protein import into mitochondrion;0.000245666269512043!GO:0005885;Arp2/3 protein complex;0.000261535098298043!GO:0006695;cholesterol biosynthetic process;0.000263675282489151!GO:0019899;enzyme binding;0.00027419541234556!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000286760971253173!GO:0003724;RNA helicase activity;0.000296438547452497!GO:0016310;phosphorylation;0.00029926080188402!GO:0008361;regulation of cell size;0.000310066090865603!GO:0016568;chromatin modification;0.000322698748960185!GO:0006334;nucleosome assembly;0.000324026931734346!GO:0005791;rough endoplasmic reticulum;0.000333832016525572!GO:0016049;cell growth;0.000417649381495628!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000447850286915201!GO:0050662;coenzyme binding;0.000455122540798365!GO:0031497;chromatin assembly;0.000457244689941358!GO:0004576;oligosaccharyl transferase activity;0.000457446730847641!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000458173571351982!GO:0015630;microtubule cytoskeleton;0.000462718767165815!GO:0044452;nucleolar part;0.000463960016414683!GO:0019752;carboxylic acid metabolic process;0.000472427780653898!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000477913180912634!GO:0008250;oligosaccharyl transferase complex;0.000478505389463184!GO:0006082;organic acid metabolic process;0.000478729680609691!GO:0019843;rRNA binding;0.000487565975643305!GO:0048522;positive regulation of cellular process;0.000499307390191575!GO:0006414;translational elongation;0.000509840956345283!GO:0046483;heterocycle metabolic process;0.000536825222141276!GO:0051789;response to protein stimulus;0.000536825222141276!GO:0006986;response to unfolded protein;0.000536825222141276!GO:0051427;hormone receptor binding;0.000592200717080251!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000629203420084749!GO:0005813;centrosome;0.000669990431130815!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000672745526926082!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000699552888966948!GO:0006612;protein targeting to membrane;0.000706755971665006!GO:0044262;cellular carbohydrate metabolic process;0.000722948726580304!GO:0043488;regulation of mRNA stability;0.000761049617810164!GO:0043487;regulation of RNA stability;0.000761049617810164!GO:0008168;methyltransferase activity;0.000775736158398274!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000775736158398274!GO:0042802;identical protein binding;0.000775736158398274!GO:0003729;mRNA binding;0.000803234791554353!GO:0051920;peroxiredoxin activity;0.000814118977434701!GO:0030663;COPI coated vesicle membrane;0.000819744162411161!GO:0030126;COPI vesicle coat;0.000819744162411161!GO:0001558;regulation of cell growth;0.00083971841087452!GO:0007006;mitochondrial membrane organization and biogenesis;0.000854742040095715!GO:0051252;regulation of RNA metabolic process;0.000869571837276841!GO:0051329;interphase of mitotic cell cycle;0.000879358168923397!GO:0030036;actin cytoskeleton organization and biogenesis;0.00092963334145708!GO:0016741;transferase activity, transferring one-carbon groups;0.000942495417217032!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000983994071720555!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000983994071720555!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000983994071720555!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00102451476207582!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00113306938251948!GO:0035257;nuclear hormone receptor binding;0.00113572652248652!GO:0051540;metal cluster binding;0.00114667420238303!GO:0051536;iron-sulfur cluster binding;0.00114667420238303!GO:0018196;peptidyl-asparagine modification;0.00116430353439494!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00116430353439494!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00128145677162143!GO:0046489;phosphoinositide biosynthetic process;0.00134066416976519!GO:0043284;biopolymer biosynthetic process;0.00134820911269191!GO:0030880;RNA polymerase complex;0.00135807241468732!GO:0005815;microtubule organizing center;0.00139968369682263!GO:0006383;transcription from RNA polymerase III promoter;0.00146379899272591!GO:0051287;NAD binding;0.00147453502262334!GO:0030137;COPI-coated vesicle;0.00177600125059179!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00185984596461353!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00185984596461353!GO:0004177;aminopeptidase activity;0.00187345032475958!GO:0030132;clathrin coat of coated pit;0.00194026827128092!GO:0000279;M phase;0.00207605150126047!GO:0019222;regulation of metabolic process;0.00208353952390451!GO:0006118;electron transport;0.00209927186621189!GO:0022890;inorganic cation transmembrane transporter activity;0.00236817408266806!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00240220536677765!GO:0015002;heme-copper terminal oxidase activity;0.00240220536677765!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00240220536677765!GO:0004129;cytochrome-c oxidase activity;0.00240220536677765!GO:0030658;transport vesicle membrane;0.00240423162746008!GO:0016044;membrane organization and biogenesis;0.00252059139118583!GO:0006650;glycerophospholipid metabolic process;0.00253868930619137!GO:0051087;chaperone binding;0.0025841206276747!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00278416010940316!GO:0015399;primary active transmembrane transporter activity;0.00278416010940316!GO:0000049;tRNA binding;0.00283964729436302!GO:0008632;apoptotic program;0.00291261763209906!GO:0006261;DNA-dependent DNA replication;0.00292326434794153!GO:0051325;interphase;0.00294252910159459!GO:0008180;signalosome;0.002956205995737!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00307642840273059!GO:0000428;DNA-directed RNA polymerase complex;0.00307642840273059!GO:0008047;enzyme activator activity;0.00310680243861777!GO:0000059;protein import into nucleus, docking;0.00336895215564505!GO:0015992;proton transport;0.00337325635311082!GO:0006740;NADPH regeneration;0.00346607154112168!GO:0006098;pentose-phosphate shunt;0.00346607154112168!GO:0006818;hydrogen transport;0.00355286771335129!GO:0031072;heat shock protein binding;0.00373717825393141!GO:0008186;RNA-dependent ATPase activity;0.00384239820940582!GO:0006402;mRNA catabolic process;0.00385179429849563!GO:0048037;cofactor binding;0.00403154717950126!GO:0048471;perinuclear region of cytoplasm;0.0040624821598995!GO:0030118;clathrin coat;0.00410633197282654!GO:0006595;polyamine metabolic process;0.00414200512969288!GO:0006401;RNA catabolic process;0.00443484223771524!GO:0048487;beta-tubulin binding;0.00443702539501926!GO:0030029;actin filament-based process;0.00450677154755678!GO:0031902;late endosome membrane;0.00457952767165288!GO:0048500;signal recognition particle;0.00460696165368201!GO:0003690;double-stranded DNA binding;0.00460866588841061!GO:0003746;translation elongation factor activity;0.00461164872763827!GO:0006520;amino acid metabolic process;0.0046367539247626!GO:0007243;protein kinase cascade;0.00503068421428954!GO:0005869;dynactin complex;0.00520499838062904!GO:0006891;intra-Golgi vesicle-mediated transport;0.00522655706919145!GO:0030027;lamellipodium;0.00551850002526548!GO:0009112;nucleobase metabolic process;0.00560069235611311!GO:0051168;nuclear export;0.00564650610331507!GO:0006979;response to oxidative stress;0.00565641748587862!GO:0006778;porphyrin metabolic process;0.005757149439923!GO:0033013;tetrapyrrole metabolic process;0.005757149439923!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00586871092082607!GO:0007050;cell cycle arrest;0.00620628943094256!GO:0030145;manganese ion binding;0.00634794793997378!GO:0051539;4 iron, 4 sulfur cluster binding;0.00642211446932557!GO:0005096;GTPase activator activity;0.00642211446932557!GO:0009116;nucleoside metabolic process;0.00683289035375134!GO:0030660;Golgi-associated vesicle membrane;0.00697110688472945!GO:0016408;C-acyltransferase activity;0.00702889475856655!GO:0017166;vinculin binding;0.00705777547162869!GO:0008139;nuclear localization sequence binding;0.00724140888836255!GO:0005684;U2-dependent spliceosome;0.00724907380569565!GO:0006289;nucleotide-excision repair;0.00739893248858016!GO:0007034;vacuolar transport;0.00749356916641261!GO:0030176;integral to endoplasmic reticulum membrane;0.00765574740928629!GO:0043022;ribosome binding;0.00788240389047043!GO:0040008;regulation of growth;0.00825622627562527!GO:0007264;small GTPase mediated signal transduction;0.00847464816423437!GO:0031901;early endosome membrane;0.0085295748993668!GO:0007010;cytoskeleton organization and biogenesis;0.00857635226330479!GO:0008312;7S RNA binding;0.00863385919852309!GO:0016407;acetyltransferase activity;0.00873766996142402!GO:0004004;ATP-dependent RNA helicase activity;0.00884877875745449!GO:0022408;negative regulation of cell-cell adhesion;0.00885787932203822!GO:0016363;nuclear matrix;0.00886822092101029!GO:0006497;protein amino acid lipidation;0.0089791236237639!GO:0005774;vacuolar membrane;0.00899225749523417!GO:0030125;clathrin vesicle coat;0.00900995776646994!GO:0030665;clathrin coated vesicle membrane;0.00900995776646994!GO:0042158;lipoprotein biosynthetic process;0.00903833113741378!GO:0006643;membrane lipid metabolic process;0.00913144556647331!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00922852457162057!GO:0045047;protein targeting to ER;0.00922852457162057!GO:0030041;actin filament polymerization;0.00930345414835871!GO:0001726;ruffle;0.00947934760683332!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0095153218927157!GO:0006733;oxidoreduction coenzyme metabolic process;0.00954449089566958!GO:0065009;regulation of a molecular function;0.00981938028905364!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00994715985214773!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00994715985214773!GO:0006352;transcription initiation;0.00995658217913739!GO:0030134;ER to Golgi transport vesicle;0.010316714213709!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0106500858822927!GO:0016860;intramolecular oxidoreductase activity;0.0109148902554335!GO:0030127;COPII vesicle coat;0.0112298893819704!GO:0012507;ER to Golgi transport vesicle membrane;0.0112298893819704!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0113838789014721!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0117689319847804!GO:0031625;ubiquitin protein ligase binding;0.0117689319847804!GO:0016125;sterol metabolic process;0.0118267669450715!GO:0009451;RNA modification;0.0119942039389101!GO:0045892;negative regulation of transcription, DNA-dependent;0.0120721517248229!GO:0006807;nitrogen compound metabolic process;0.0124866445247336!GO:0005832;chaperonin-containing T-complex;0.0125051284737144!GO:0000096;sulfur amino acid metabolic process;0.0126434904061294!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0127490276580418!GO:0048468;cell development;0.0130253671354239!GO:0048518;positive regulation of biological process;0.0130961090446121!GO:0007033;vacuole organization and biogenesis;0.0131031158794152!GO:0008652;amino acid biosynthetic process;0.0131227777966304!GO:0003711;transcription elongation regulator activity;0.0131821976750242!GO:0003678;DNA helicase activity;0.0131821976750242!GO:0006779;porphyrin biosynthetic process;0.0132014389607476!GO:0033014;tetrapyrrole biosynthetic process;0.0132014389607476!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0133922392511438!GO:0000339;RNA cap binding;0.0133922392511438!GO:0016197;endosome transport;0.0138483186653203!GO:0001953;negative regulation of cell-matrix adhesion;0.0138898736907194!GO:0030659;cytoplasmic vesicle membrane;0.0139325714617669!GO:0032984;macromolecular complex disassembly;0.0145398846907843!GO:0006506;GPI anchor biosynthetic process;0.0148439678377707!GO:0003684;damaged DNA binding;0.0148474969801241!GO:0009303;rRNA transcription;0.0149102088791191!GO:0043492;ATPase activity, coupled to movement of substances;0.0149655897411756!GO:0005819;spindle;0.0152442760793481!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0157175723248947!GO:0007040;lysosome organization and biogenesis;0.0162628625327198!GO:0000082;G1/S transition of mitotic cell cycle;0.0167780162110087!GO:0045941;positive regulation of transcription;0.0168397168078426!GO:0033673;negative regulation of kinase activity;0.0168397168078426!GO:0006469;negative regulation of protein kinase activity;0.0168397168078426!GO:0007041;lysosomal transport;0.0169900964571134!GO:0035258;steroid hormone receptor binding;0.0170528746695753!GO:0008637;apoptotic mitochondrial changes;0.017119791764965!GO:0004527;exonuclease activity;0.0173217815104642!GO:0016272;prefoldin complex;0.0174856906438411!GO:0031529;ruffle organization and biogenesis;0.0176048965215966!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0177737898804841!GO:0009308;amine metabolic process;0.0177841257477452!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0181140070920458!GO:0042168;heme metabolic process;0.0181926528174295!GO:0030032;lamellipodium biogenesis;0.0186342229420404!GO:0033559;unsaturated fatty acid metabolic process;0.0187307960948832!GO:0006636;unsaturated fatty acid biosynthetic process;0.0187307960948832!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.018881194062491!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0192678116839073!GO:0030119;AP-type membrane coat adaptor complex;0.0193429739503909!GO:0006739;NADP metabolic process;0.0193664889019107!GO:0006505;GPI anchor metabolic process;0.0195766515358634!GO:0015631;tubulin binding;0.0195881778263598!GO:0005758;mitochondrial intermembrane space;0.0196701527187089!GO:0065007;biological regulation;0.0196701527187089!GO:0006220;pyrimidine nucleotide metabolic process;0.0198721280711334!GO:0051348;negative regulation of transferase activity;0.0200970463302254!GO:0004722;protein serine/threonine phosphatase activity;0.0200970463302254!GO:0005637;nuclear inner membrane;0.0203647544667385!GO:0051537;2 iron, 2 sulfur cluster binding;0.0206194692658799!GO:0044437;vacuolar part;0.0206762155573748!GO:0030984;kininogen binding;0.0208767203195372!GO:0004213;cathepsin B activity;0.0208767203195372!GO:0019206;nucleoside kinase activity;0.0208767203195372!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0209606392219381!GO:0048144;fibroblast proliferation;0.0209788225723956!GO:0048145;regulation of fibroblast proliferation;0.0209788225723956!GO:0006144;purine base metabolic process;0.0209958873061426!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0211136115601648!GO:0006509;membrane protein ectodomain proteolysis;0.0211136115601648!GO:0033619;membrane protein proteolysis;0.0211136115601648!GO:0006769;nicotinamide metabolic process;0.0215037877596628!GO:0008154;actin polymerization and/or depolymerization;0.0215037877596628!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0215405081474748!GO:0016251;general RNA polymerase II transcription factor activity;0.0216505209916889!GO:0005765;lysosomal membrane;0.022022491708221!GO:0031970;organelle envelope lumen;0.0220450829838827!GO:0030508;thiol-disulfide exchange intermediate activity;0.0222040970680977!GO:0047485;protein N-terminus binding;0.0222040970680977!GO:0009119;ribonucleoside metabolic process;0.022223374223559!GO:0030521;androgen receptor signaling pathway;0.022537720047238!GO:0000178;exosome (RNase complex);0.0225488893044176!GO:0006354;RNA elongation;0.0225488893044176!GO:0007021;tubulin folding;0.022639134629941!GO:0030833;regulation of actin filament polymerization;0.022655748848525!GO:0043241;protein complex disassembly;0.0227925733483903!GO:0030031;cell projection biogenesis;0.0227925733483903!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0231748108239991!GO:0035035;histone acetyltransferase binding;0.0232402722662792!GO:0005862;muscle thin filament tropomyosin;0.0233409550964325!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.023490783482535!GO:0045893;positive regulation of transcription, DNA-dependent;0.0235522804899548!GO:0008092;cytoskeletal protein binding;0.0244151915046245!GO:0006007;glucose catabolic process;0.0244637791201063!GO:0006790;sulfur metabolic process;0.0244637791201063!GO:0046128;purine ribonucleoside metabolic process;0.0244637791201063!GO:0042278;purine nucleoside metabolic process;0.0244637791201063!GO:0031272;regulation of pseudopodium formation;0.0244637791201063!GO:0031269;pseudopodium formation;0.0244637791201063!GO:0031344;regulation of cell projection organization and biogenesis;0.0244637791201063!GO:0031268;pseudopodium organization and biogenesis;0.0244637791201063!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0244637791201063!GO:0031274;positive regulation of pseudopodium formation;0.0244637791201063!GO:0032508;DNA duplex unwinding;0.0247036640640031!GO:0032392;DNA geometric change;0.0247036640640031!GO:0000030;mannosyltransferase activity;0.0254210289924838!GO:0043624;cellular protein complex disassembly;0.025544776665278!GO:0043065;positive regulation of apoptosis;0.0257787069660583!GO:0051128;regulation of cellular component organization and biogenesis;0.0259449716868125!GO:0008538;proteasome activator activity;0.0259531340876798!GO:0015036;disulfide oxidoreductase activity;0.0264414503079381!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0264414503079381!GO:0045792;negative regulation of cell size;0.0264919617745958!GO:0006644;phospholipid metabolic process;0.0266372442329582!GO:0006767;water-soluble vitamin metabolic process;0.0269995262098437!GO:0009967;positive regulation of signal transduction;0.0270376914212103!GO:0048146;positive regulation of fibroblast proliferation;0.0273802576412288!GO:0030384;phosphoinositide metabolic process;0.0276438612558568!GO:0006417;regulation of translation;0.0279512785559595!GO:0044255;cellular lipid metabolic process;0.0282460760608983!GO:0031124;mRNA 3'-end processing;0.0285413197299016!GO:0006519;amino acid and derivative metabolic process;0.0288428488945123!GO:0044433;cytoplasmic vesicle part;0.028976151028845!GO:0000075;cell cycle checkpoint;0.0293705250714549!GO:0043068;positive regulation of programmed cell death;0.0295482571565858!GO:0030308;negative regulation of cell growth;0.0297910358806876!GO:0005100;Rho GTPase activator activity;0.0299686387865291!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0309946154933923!GO:0001952;regulation of cell-matrix adhesion;0.0310963691191257!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0311575206479048!GO:0009124;nucleoside monophosphate biosynthetic process;0.0313460164313746!GO:0009123;nucleoside monophosphate metabolic process;0.0313460164313746!GO:0005657;replication fork;0.0314847312923675!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0323374977247165!GO:0010257;NADH dehydrogenase complex assembly;0.0323374977247165!GO:0033108;mitochondrial respiratory chain complex assembly;0.0323374977247165!GO:0000786;nucleosome;0.0323374977247165!GO:0006302;double-strand break repair;0.0326084627514549!GO:0030131;clathrin adaptor complex;0.0343478317272447!GO:0007569;cell aging;0.0345290815189888!GO:0006611;protein export from nucleus;0.0346403411162512!GO:0046519;sphingoid metabolic process;0.034832053702213!GO:0030911;TPR domain binding;0.0352675701606802!GO:0000209;protein polyubiquitination;0.0353653386835521!GO:0019362;pyridine nucleotide metabolic process;0.0354004417243573!GO:0022411;cellular component disassembly;0.0355987771369163!GO:0009081;branched chain family amino acid metabolic process;0.035923439709898!GO:0006376;mRNA splice site selection;0.0360922658563604!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0360922658563604!GO:0000287;magnesium ion binding;0.0362080728145501!GO:0006892;post-Golgi vesicle-mediated transport;0.0363097971038418!GO:0008097;5S rRNA binding;0.0363097971038418!GO:0050811;GABA receptor binding;0.0363928160126967!GO:0030518;steroid hormone receptor signaling pathway;0.0366634078050756!GO:0003756;protein disulfide isomerase activity;0.0369435977898074!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0369435977898074!GO:0006066;alcohol metabolic process;0.0369763375022422!GO:0006268;DNA unwinding during replication;0.0376215909508782!GO:0031418;L-ascorbic acid binding;0.0378287871898455!GO:0031371;ubiquitin conjugating enzyme complex;0.0379089254253999!GO:0043433;negative regulation of transcription factor activity;0.0383451495792932!GO:0045045;secretory pathway;0.038442199096449!GO:0008022;protein C-terminus binding;0.0385910557342387!GO:0006950;response to stress;0.0388461297749711!GO:0008299;isoprenoid biosynthetic process;0.0389368405075788!GO:0043189;H4/H2A histone acetyltransferase complex;0.039323547947591!GO:0000118;histone deacetylase complex;0.0395891192176977!GO:0006783;heme biosynthetic process;0.0400536892004841!GO:0005801;cis-Golgi network;0.0410446006928165!GO:0006405;RNA export from nucleus;0.0414928637639848!GO:0006378;mRNA polyadenylation;0.0417411557975966!GO:0005669;transcription factor TFIID complex;0.0417615170724652!GO:0004518;nuclease activity;0.0420440211995093!GO:0006400;tRNA modification;0.0426544610541599!GO:0008415;acyltransferase activity;0.0428158197225536!GO:0045334;clathrin-coated endocytic vesicle;0.0435089229808567!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.0439532079159202!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0442546533660328!GO:0009161;ribonucleoside monophosphate metabolic process;0.0444298740429472!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0444298740429472!GO:0004674;protein serine/threonine kinase activity;0.0445205398171394!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0450704916250533!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0453271130989894!GO:0051059;NF-kappaB binding;0.0454784090147576!GO:0008629;induction of apoptosis by intracellular signals;0.0455361630655749!GO:0008094;DNA-dependent ATPase activity;0.0455361630655749!GO:0009262;deoxyribonucleotide metabolic process;0.0458146265618661!GO:0006596;polyamine biosynthetic process;0.0458643577614401!GO:0050178;phenylpyruvate tautomerase activity;0.0466443687863483!GO:0043414;biopolymer methylation;0.0471743661740521!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0473820132312693!GO:0016453;C-acetyltransferase activity;0.04789832710925!GO:0008243;plasminogen activator activity;0.0487460834590601!GO:0007051;spindle organization and biogenesis;0.0490970445297673!GO:0004680;casein kinase activity;0.0494090571964194!GO:0016746;transferase activity, transferring acyl groups;0.0495899217243773!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0496388116462024 | |||
|sample_id=11418 | |sample_id=11418 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=skin | |sample_tissue=skin | ||
|top_motifs=HES1:1.83834385974;ZNF238:1.73005566938;UFEwm:1.37930076922;NKX2-2,8:1.31157668937;RXR{A,B,G}:1.3030442279;GZF1:1.22264649942;HOX{A6,A7,B6,B7}:1.16661768855;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.09891148849;FOXD3:1.08739397061;ALX4:1.08387883677;GATA4:1.01297382537;HOX{A4,D4}:0.980756526747;XBP1:0.925983725271;NKX2-1,4:0.919909976041;ESR1:0.919108132843;PAX1,9:0.914927285924;EN1,2:0.856523745071;NR3C1:0.812827134727;KLF4:0.724481508619;AIRE:0.707230534292;STAT5{A,B}:0.697651733004;TOPORS:0.687333096102;FOXL1:0.648636829191;PAX8:0.631172620173;ZIC1..3:0.617036240818;TFCP2:0.584740029935;ZNF423:0.555635632213;IKZF1:0.510384356006;GFI1B:0.449762565482;FOXQ1:0.439838046538;MTF1:0.429031149826;SPZ1:0.408382583488;LHX3,4:0.401815747965;TAL1_TCF{3,4,12}:0.384550883359;AR:0.378146543413;HOX{A5,B5}:0.371175195019;ONECUT1,2:0.358060240678;TEAD1:0.355976424769;EGR1..3:0.335348998909;TP53:0.33404055979;HAND1,2:0.332944442992;ZBTB16:0.330804369081;PDX1:0.321810833235;TFAP4:0.300941800122;ZNF384:0.297715321806;ZBTB6:0.27328913878;NKX3-1:0.266640858288;YY1:0.259190162315;NFE2L1:0.235140253245;TLX1..3_NFIC{dimer}:0.234531262124;ATF6:0.230457983766;TEF:0.229974356525;NR6A1:0.20921615841;EVI1:0.209197113821;NFATC1..3:0.20279791263;PRDM1:0.202611076091;TFDP1:0.187858260616;PAX4:0.161141336077;NKX6-1,2:0.158256426113;ARID5B:0.155425769454;GTF2I:0.15270680561;TFAP2B:0.134423074608;SRF:0.127208035519;FOS_FOS{B,L1}_JUN{B,D}:0.113976502873;bHLH_family:0.113908031159;HIC1:0.091308686339;GLI1..3:0.0712795062688;EBF1:0.0550508251984;MYFfamily:0.0512515938395;PRRX1,2:0.043745794635;RREB1:0.0435914662165;HNF4A_NR2F1,2:0.0404789980078;PAX5:0.0398856554945;MYBL2:0.0393744622556;AHR_ARNT_ARNT2:0.0367377279477;HNF1A:0.0277281522679;REST:0.022012853738;POU3F1..4:0.0215082819001;DMAP1_NCOR{1,2}_SMARC:0.0164051539271;BACH2:0.0145527291453;NFE2L2:-0.0015725094413;NANOG{mouse}:-0.00654327310481;HSF1,2:-0.0137466843737;NR1H4:-0.0220247117504;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.034486641582;HBP1_HMGB_SSRP1_UBTF:-0.043874285651;GTF2A1,2:-0.0495523249439;SOX17:-0.0541683031652;LEF1_TCF7_TCF7L1,2:-0.0813071595143;PATZ1:-0.0960408396521;HLF:-0.0979707990315;TFAP2{A,C}:-0.108017506714;ESRRA:-0.108320202349;MZF1:-0.144322121965;NR5A1,2:-0.152386029468;CEBPA,B_DDIT3:-0.154300947842;DBP:-0.157489423712;MTE{core}:-0.165670343206;FOSL2:-0.168867518067;PPARG:-0.180742152288;HIF1A:-0.192686048392;FOXO1,3,4:-0.197348984737;MEF2{A,B,C,D}:-0.209364622204;MAFB:-0.213285362765;NHLH1,2:-0.216024453968;STAT2,4,6:-0.2244904944;POU1F1:-0.228791387333;PAX3,7:-0.242646276373;GCM1,2:-0.243259584527;XCPE1{core}:-0.250885973221;CDC5L:-0.251000220886;NKX2-3_NKX2-5:-0.252950808153;TBP:-0.265921386285;NKX3-2:-0.271119625563;ADNP_IRX_SIX_ZHX:-0.274964871213;FOXM1:-0.283457927028;NFKB1_REL_RELA:-0.28997872855;TGIF1:-0.291304203536;NFE2:-0.300987426233;CREB1:-0.308246063396;ZFP161:-0.325657738898;MYB:-0.328525404078;ZNF143:-0.334222904124;ZNF148:-0.341985122877;MED-1{core}:-0.37534669809;NFIX:-0.38815381279;SOX5:-0.39029096314;IRF1,2:-0.397818525522;RUNX1..3:-0.409790511942;RFX1:-0.414329188878;BPTF:-0.445535606881;HMGA1,2:-0.451220891586;POU6F1:-0.468416238299;GFI1:-0.475146036035;T:-0.475306078041;SPI1:-0.480874408276;HMX1:-0.492599143083;SP1:-0.495927635594;ELK1,4_GABP{A,B1}:-0.509016230973;E2F1..5:-0.51213509997;POU2F1..3:-0.539958836744;HOXA9_MEIS1:-0.564128998327;PAX2:-0.5659411374;BREu{core}:-0.567466842379;FOX{I1,J2}:-0.572125947011;ALX1:-0.574417376484;MAZ:-0.582304938107;LMO2:-0.583645318142;NRF1:-0.587327989102;FOXP3:-0.588718216284;TBX4,5:-0.595686235535;ATF2:-0.596854766252;CRX:-0.612226976445;RXRA_VDR{dimer}:-0.62072658562;SPIB:-0.631496767088;SREBF1,2:-0.65025427242;ATF5_CREB3:-0.666532813891;RFX2..5_RFXANK_RFXAP:-0.683642347635;ETS1,2:-0.69078754465;FOXP1:-0.694820547213;IKZF2:-0.696402497061;CUX2:-0.699110541502;ELF1,2,4:-0.700609089679;CDX1,2,4:-0.709971904345;FOX{D1,D2}:-0.711385536418;FOXA2:-0.731190918995;GATA6:-0.731776781124;IRF7:-0.752599896807;PITX1..3:-0.773490559934;SNAI1..3:-0.777230912979;RBPJ:-0.781296526238;OCT4_SOX2{dimer}:-0.803640007975;ATF4:-0.804361160274;NFIL3:-0.807754445124;ZEB1:-0.821129053397;PBX1:-0.823507779524;SMAD1..7,9:-0.829848355057;STAT1,3:-0.868120179007;TLX2:-0.924388340378;JUN:-0.949963827968;POU5F1:-0.988088922672;NFY{A,B,C}:-0.995930118986;MYOD1:-1.03261250276;SOX{8,9,10}:-1.06346600878;RORA:-1.1382094483;FOXN1:-1.15109319283;PAX6:-1.15485233455;VSX1,2:-1.23720071692;NANOG:-1.42084514199;SOX2:-1.44064563407;FOX{F1,F2,J1}:-1.55461535756;EP300:-1.68743867128 | |top_motifs=HES1:1.83834385974;ZNF238:1.73005566938;UFEwm:1.37930076922;NKX2-2,8:1.31157668937;RXR{A,B,G}:1.3030442279;GZF1:1.22264649942;HOX{A6,A7,B6,B7}:1.16661768855;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.09891148849;FOXD3:1.08739397061;ALX4:1.08387883677;GATA4:1.01297382537;HOX{A4,D4}:0.980756526747;XBP1:0.925983725271;NKX2-1,4:0.919909976041;ESR1:0.919108132843;PAX1,9:0.914927285924;EN1,2:0.856523745071;NR3C1:0.812827134727;KLF4:0.724481508619;AIRE:0.707230534292;STAT5{A,B}:0.697651733004;TOPORS:0.687333096102;FOXL1:0.648636829191;PAX8:0.631172620173;ZIC1..3:0.617036240818;TFCP2:0.584740029935;ZNF423:0.555635632213;IKZF1:0.510384356006;GFI1B:0.449762565482;FOXQ1:0.439838046538;MTF1:0.429031149826;SPZ1:0.408382583488;LHX3,4:0.401815747965;TAL1_TCF{3,4,12}:0.384550883359;AR:0.378146543413;HOX{A5,B5}:0.371175195019;ONECUT1,2:0.358060240678;TEAD1:0.355976424769;EGR1..3:0.335348998909;TP53:0.33404055979;HAND1,2:0.332944442992;ZBTB16:0.330804369081;PDX1:0.321810833235;TFAP4:0.300941800122;ZNF384:0.297715321806;ZBTB6:0.27328913878;NKX3-1:0.266640858288;YY1:0.259190162315;NFE2L1:0.235140253245;TLX1..3_NFIC{dimer}:0.234531262124;ATF6:0.230457983766;TEF:0.229974356525;NR6A1:0.20921615841;EVI1:0.209197113821;NFATC1..3:0.20279791263;PRDM1:0.202611076091;TFDP1:0.187858260616;PAX4:0.161141336077;NKX6-1,2:0.158256426113;ARID5B:0.155425769454;GTF2I:0.15270680561;TFAP2B:0.134423074608;SRF:0.127208035519;FOS_FOS{B,L1}_JUN{B,D}:0.113976502873;bHLH_family:0.113908031159;HIC1:0.091308686339;GLI1..3:0.0712795062688;EBF1:0.0550508251984;MYFfamily:0.0512515938395;PRRX1,2:0.043745794635;RREB1:0.0435914662165;HNF4A_NR2F1,2:0.0404789980078;PAX5:0.0398856554945;MYBL2:0.0393744622556;AHR_ARNT_ARNT2:0.0367377279477;HNF1A:0.0277281522679;REST:0.022012853738;POU3F1..4:0.0215082819001;DMAP1_NCOR{1,2}_SMARC:0.0164051539271;BACH2:0.0145527291453;NFE2L2:-0.0015725094413;NANOG{mouse}:-0.00654327310481;HSF1,2:-0.0137466843737;NR1H4:-0.0220247117504;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.034486641582;HBP1_HMGB_SSRP1_UBTF:-0.043874285651;GTF2A1,2:-0.0495523249439;SOX17:-0.0541683031652;LEF1_TCF7_TCF7L1,2:-0.0813071595143;PATZ1:-0.0960408396521;HLF:-0.0979707990315;TFAP2{A,C}:-0.108017506714;ESRRA:-0.108320202349;MZF1:-0.144322121965;NR5A1,2:-0.152386029468;CEBPA,B_DDIT3:-0.154300947842;DBP:-0.157489423712;MTE{core}:-0.165670343206;FOSL2:-0.168867518067;PPARG:-0.180742152288;HIF1A:-0.192686048392;FOXO1,3,4:-0.197348984737;MEF2{A,B,C,D}:-0.209364622204;MAFB:-0.213285362765;NHLH1,2:-0.216024453968;STAT2,4,6:-0.2244904944;POU1F1:-0.228791387333;PAX3,7:-0.242646276373;GCM1,2:-0.243259584527;XCPE1{core}:-0.250885973221;CDC5L:-0.251000220886;NKX2-3_NKX2-5:-0.252950808153;TBP:-0.265921386285;NKX3-2:-0.271119625563;ADNP_IRX_SIX_ZHX:-0.274964871213;FOXM1:-0.283457927028;NFKB1_REL_RELA:-0.28997872855;TGIF1:-0.291304203536;NFE2:-0.300987426233;CREB1:-0.308246063396;ZFP161:-0.325657738898;MYB:-0.328525404078;ZNF143:-0.334222904124;ZNF148:-0.341985122877;MED-1{core}:-0.37534669809;NFIX:-0.38815381279;SOX5:-0.39029096314;IRF1,2:-0.397818525522;RUNX1..3:-0.409790511942;RFX1:-0.414329188878;BPTF:-0.445535606881;HMGA1,2:-0.451220891586;POU6F1:-0.468416238299;GFI1:-0.475146036035;T:-0.475306078041;SPI1:-0.480874408276;HMX1:-0.492599143083;SP1:-0.495927635594;ELK1,4_GABP{A,B1}:-0.509016230973;E2F1..5:-0.51213509997;POU2F1..3:-0.539958836744;HOXA9_MEIS1:-0.564128998327;PAX2:-0.5659411374;BREu{core}:-0.567466842379;FOX{I1,J2}:-0.572125947011;ALX1:-0.574417376484;MAZ:-0.582304938107;LMO2:-0.583645318142;NRF1:-0.587327989102;FOXP3:-0.588718216284;TBX4,5:-0.595686235535;ATF2:-0.596854766252;CRX:-0.612226976445;RXRA_VDR{dimer}:-0.62072658562;SPIB:-0.631496767088;SREBF1,2:-0.65025427242;ATF5_CREB3:-0.666532813891;RFX2..5_RFXANK_RFXAP:-0.683642347635;ETS1,2:-0.69078754465;FOXP1:-0.694820547213;IKZF2:-0.696402497061;CUX2:-0.699110541502;ELF1,2,4:-0.700609089679;CDX1,2,4:-0.709971904345;FOX{D1,D2}:-0.711385536418;FOXA2:-0.731190918995;GATA6:-0.731776781124;IRF7:-0.752599896807;PITX1..3:-0.773490559934;SNAI1..3:-0.777230912979;RBPJ:-0.781296526238;OCT4_SOX2{dimer}:-0.803640007975;ATF4:-0.804361160274;NFIL3:-0.807754445124;ZEB1:-0.821129053397;PBX1:-0.823507779524;SMAD1..7,9:-0.829848355057;STAT1,3:-0.868120179007;TLX2:-0.924388340378;JUN:-0.949963827968;POU5F1:-0.988088922672;NFY{A,B,C}:-0.995930118986;MYOD1:-1.03261250276;SOX{8,9,10}:-1.06346600878;RORA:-1.1382094483;FOXN1:-1.15109319283;PAX6:-1.15485233455;VSX1,2:-1.23720071692;NANOG:-1.42084514199;SOX2:-1.44064563407;FOX{F1,F2,J1}:-1.55461535756;EP300:-1.68743867128 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11418-118F5;search_select_hide=table117:FF:11418-118F5 | |||
}} | }} | ||
Latest revision as of 17:59, 4 June 2020
| Name: | Fibroblast - Dermal, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12028 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12028
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12028
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.198 |
| 10 | 10 | 0.0474 |
| 100 | 100 | 0.312 |
| 101 | 101 | 0.911 |
| 102 | 102 | 0.686 |
| 103 | 103 | 0.495 |
| 104 | 104 | 0.625 |
| 105 | 105 | 0.0953 |
| 106 | 106 | 0.044 |
| 107 | 107 | 0.0637 |
| 108 | 108 | 0.0985 |
| 109 | 109 | 0.101 |
| 11 | 11 | 0.177 |
| 110 | 110 | 0.101 |
| 111 | 111 | 0.0512 |
| 112 | 112 | 0.206 |
| 113 | 113 | 0.015 |
| 114 | 114 | 0.0762 |
| 115 | 115 | 0.0801 |
| 116 | 116 | 0.0453 |
| 117 | 117 | 0.207 |
| 118 | 118 | 0.259 |
| 119 | 119 | 0.518 |
| 12 | 12 | 0.443 |
| 120 | 120 | 0.0775 |
| 121 | 121 | 0.519 |
| 122 | 122 | 0.0431 |
| 123 | 123 | 0.158 |
| 124 | 124 | 0.499 |
| 125 | 125 | 0.174 |
| 126 | 126 | 0.651 |
| 127 | 127 | 0.609 |
| 128 | 128 | 0.0456 |
| 129 | 129 | 0.565 |
| 13 | 13 | 0.575 |
| 130 | 130 | 0.665 |
| 131 | 131 | 0.607 |
| 132 | 132 | 0.298 |
| 133 | 133 | 0.381 |
| 134 | 134 | 0.4 |
| 135 | 135 | 0.385 |
| 136 | 136 | 0.931 |
| 137 | 137 | 0.227 |
| 138 | 138 | 0.899 |
| 139 | 139 | 0.518 |
| 14 | 14 | 0.145 |
| 140 | 140 | 0.382 |
| 141 | 141 | 0.684 |
| 142 | 142 | 0.388 |
| 143 | 143 | 0.195 |
| 144 | 144 | 0.708 |
| 145 | 145 | 0.0582 |
| 146 | 146 | 0.711 |
| 147 | 147 | 0.0555 |
| 148 | 148 | 0.0394 |
| 149 | 149 | 0.241 |
| 15 | 15 | 0.687 |
| 150 | 150 | 0.137 |
| 151 | 151 | 0.439 |
| 152 | 152 | 0.0166 |
| 153 | 153 | 0.269 |
| 154 | 154 | 0.667 |
| 155 | 155 | 0.234 |
| 156 | 156 | 0.268 |
| 157 | 157 | 0.745 |
| 158 | 158 | 0.13 |
| 159 | 159 | 0.491 |
| 16 | 16 | 0.0401 |
| 160 | 160 | 0.032 |
| 161 | 161 | 0.627 |
| 162 | 162 | 0.538 |
| 163 | 163 | 0.955 |
| 164 | 164 | 0.0233 |
| 165 | 165 | 0.678 |
| 166 | 166 | 0.842 |
| 167 | 167 | 0.45 |
| 168 | 168 | 0.599 |
| 169 | 169 | 0.023 |
| 17 | 17 | 0.291 |
| 18 | 18 | 0.0858 |
| 19 | 19 | 0.0312 |
| 2 | 2 | 0.587 |
| 20 | 20 | 0.667 |
| 21 | 21 | 0.00775 |
| 22 | 22 | 0.185 |
| 23 | 23 | 0.666 |
| 24 | 24 | 0.794 |
| 25 | 25 | 0.457 |
| 26 | 26 | 0.0995 |
| 27 | 27 | 0.235 |
| 28 | 28 | 0.179 |
| 29 | 29 | 0.119 |
| 3 | 3 | 0.242 |
| 30 | 30 | 0.987 |
| 31 | 31 | 0.608 |
| 32 | 32 | 2.18237e-5 |
| 33 | 33 | 0.397 |
| 34 | 34 | 0.806 |
| 35 | 35 | 0.628 |
| 36 | 36 | 0.233 |
| 37 | 37 | 0.0182 |
| 38 | 38 | 0.909 |
| 39 | 39 | 0.236 |
| 4 | 4 | 0.396 |
| 40 | 40 | 0.569 |
| 41 | 41 | 0.366 |
| 42 | 42 | 0.944 |
| 43 | 43 | 0.2 |
| 44 | 44 | 0.0218 |
| 45 | 45 | 0.754 |
| 46 | 46 | 0.0993 |
| 47 | 47 | 0.702 |
| 48 | 48 | 0.445 |
| 49 | 49 | 0.246 |
| 5 | 5 | 0.877 |
| 50 | 50 | 0.41 |
| 51 | 51 | 0.522 |
| 52 | 52 | 0.675 |
| 53 | 53 | 0.314 |
| 54 | 54 | 0.626 |
| 55 | 55 | 0.195 |
| 56 | 56 | 0.621 |
| 57 | 57 | 0.359 |
| 58 | 58 | 0.631 |
| 59 | 59 | 0.189 |
| 6 | 6 | 0.969 |
| 60 | 60 | 0.611 |
| 61 | 61 | 0.876 |
| 62 | 62 | 0.75 |
| 63 | 63 | 0.17 |
| 64 | 64 | 0.769 |
| 65 | 65 | 0.359 |
| 66 | 66 | 0.441 |
| 67 | 67 | 0.573 |
| 68 | 68 | 0.255 |
| 69 | 69 | 0.245 |
| 7 | 7 | 0.431 |
| 70 | 70 | 0.0969 |
| 71 | 71 | 0.129 |
| 72 | 72 | 0.537 |
| 73 | 73 | 0.00919 |
| 74 | 74 | 0.0176 |
| 75 | 75 | 0.115 |
| 76 | 76 | 0.602 |
| 77 | 77 | 0.0869 |
| 78 | 78 | 0.892 |
| 79 | 79 | 0.0345 |
| 8 | 8 | 0.00562 |
| 80 | 80 | 0.0212 |
| 81 | 81 | 0.422 |
| 82 | 82 | 0.732 |
| 83 | 83 | 0.191 |
| 84 | 84 | 0.425 |
| 85 | 85 | 0.135 |
| 86 | 86 | 0.942 |
| 87 | 87 | 0.139 |
| 88 | 88 | 0.245 |
| 89 | 89 | 0.303 |
| 9 | 9 | 0.421 |
| 90 | 90 | 0.598 |
| 91 | 91 | 0.365 |
| 92 | 92 | 0.107 |
| 93 | 93 | 0.995 |
| 94 | 94 | 0.315 |
| 95 | 95 | 0.0266 |
| 96 | 96 | 0.284 |
| 97 | 97 | 0.639 |
| 98 | 98 | 0.318 |
| 99 | 99 | 0.0151 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12028
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)
0002551 (fibroblast of dermis)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0010317 (germ layer / neural crest derived structure)
0002067 (dermis)
0002416 (integumental system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000062 (human dermal fibroblast sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
