FF:11427-118G5: Difference between revisions

Latest revision as of 18:00, 4 June 2020

Name:	Placental Epithelial Cells, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs12037
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	placenta
dev stage	NA
sex	unknown
age	NA
cell type	placental epithelial cell
cell line	NA
company	Cell Applications
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	2637
catalog number	CA230-R10f
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004672

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12037		CAGE		DRX008406		DRR009278

Accession ID Hg19

Library id		BAM		CTSS
CNhs12037		DRZ000703		DRZ002088

Accession ID Hg38

Library id		BAM		CTSS
CNhs12037		DRZ012053		DRZ013438

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00004672

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10008.ACTTGA		sRNA-Seq		DRX037114		DRR041480

Accession ID Hg19

Library id		BAM		CTSS
SRhi10008.ACTTGA		DRZ007122

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0942
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.119
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.449
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	1.231
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.297
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.454
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.115
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.173
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.4
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.441
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.115
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.571
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	1.223
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.743
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.115
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0952
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.115
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.492
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0718
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.425
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.743
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.169
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.665
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0.115
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.693
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12037

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0944
MA0003.1	MA0003.1	0.339
MA0004.1	MA0004.1	0.944
MA0006.1	MA0006.1	0.0993
MA0007.1	MA0007.1	0.0205
MA0009.1	MA0009.1	0.611
MA0014.1	MA0014.1	0.589
MA0017.1	MA0017.1	0.735
MA0018.2	MA0018.2	0.0146
MA0019.1	MA0019.1	0.0381
MA0024.1	MA0024.1	0.13
MA0025.1	MA0025.1	0.706
MA0027.1	MA0027.1	0.402
MA0028.1	MA0028.1	0.932
MA0029.1	MA0029.1	0.197
MA0030.1	MA0030.1	0.0951
MA0031.1	MA0031.1	0.0686
MA0035.2	MA0035.2	0.961
MA0038.1	MA0038.1	0.00942
MA0039.2	MA0039.2	0.0595
MA0040.1	MA0040.1	0.701
MA0041.1	MA0041.1	0.538
MA0042.1	MA0042.1	0.784
MA0043.1	MA0043.1	0.00664
MA0046.1	MA0046.1	0.808
MA0047.2	MA0047.2	0.352
MA0048.1	MA0048.1	0.501
MA0050.1	MA0050.1	7.24438e-8
MA0051.1	MA0051.1	2.17634e-6
MA0052.1	MA0052.1	0.781
MA0055.1	MA0055.1	0.00467
MA0057.1	MA0057.1	0.521
MA0058.1	MA0058.1	0.636
MA0059.1	MA0059.1	0.883
MA0060.1	MA0060.1	9.90304e-5
MA0061.1	MA0061.1	0.172
MA0062.2	MA0062.2	0.0378
MA0065.2	MA0065.2	0.219
MA0066.1	MA0066.1	0.396
MA0067.1	MA0067.1	0.00777
MA0068.1	MA0068.1	0.985
MA0069.1	MA0069.1	0.741
MA0070.1	MA0070.1	0.0266
MA0071.1	MA0071.1	0.871
MA0072.1	MA0072.1	0.778
MA0073.1	MA0073.1	0.631
MA0074.1	MA0074.1	0.441
MA0076.1	MA0076.1	0.347
MA0077.1	MA0077.1	0.681
MA0078.1	MA0078.1	0.867
MA0079.2	MA0079.2	0.261
MA0080.2	MA0080.2	6.89737e-10
MA0081.1	MA0081.1	0.00488
MA0083.1	MA0083.1	0.492
MA0084.1	MA0084.1	0.966
MA0087.1	MA0087.1	0.473
MA0088.1	MA0088.1	0.953
MA0090.1	MA0090.1	2.68668e-4
MA0091.1	MA0091.1	0.271
MA0092.1	MA0092.1	0.565
MA0093.1	MA0093.1	0.889
MA0099.2	MA0099.2	0.266
MA0100.1	MA0100.1	0.213
MA0101.1	MA0101.1	0.0147
MA0102.2	MA0102.2	0.0162
MA0103.1	MA0103.1	0.175
MA0104.2	MA0104.2	0.254
MA0105.1	MA0105.1	0.613
MA0106.1	MA0106.1	0.113
MA0107.1	MA0107.1	0.0104
MA0108.2	MA0108.2	7.28833e-7
MA0111.1	MA0111.1	0.574
MA0112.2	MA0112.2	0.129
MA0113.1	MA0113.1	0.0072
MA0114.1	MA0114.1	0.824
MA0115.1	MA0115.1	0.306
MA0116.1	MA0116.1	0.569
MA0117.1	MA0117.1	0.349
MA0119.1	MA0119.1	0.974
MA0122.1	MA0122.1	0.91
MA0124.1	MA0124.1	0.902
MA0125.1	MA0125.1	0.452
MA0131.1	MA0131.1	0.426
MA0135.1	MA0135.1	0.109
MA0136.1	MA0136.1	1.92015e-9
MA0137.2	MA0137.2	0.203
MA0138.2	MA0138.2	0.248
MA0139.1	MA0139.1	0.993
MA0140.1	MA0140.1	0.419
MA0141.1	MA0141.1	0.724
MA0142.1	MA0142.1	0.577
MA0143.1	MA0143.1	0.788
MA0144.1	MA0144.1	0.957
MA0145.1	MA0145.1	0.272
MA0146.1	MA0146.1	0.019
MA0147.1	MA0147.1	0.314
MA0148.1	MA0148.1	0.371
MA0149.1	MA0149.1	0.613
MA0150.1	MA0150.1	0.0335
MA0152.1	MA0152.1	0.81
MA0153.1	MA0153.1	0.525
MA0154.1	MA0154.1	0.391
MA0155.1	MA0155.1	0.12
MA0156.1	MA0156.1	8.78822e-6
MA0157.1	MA0157.1	0.022
MA0159.1	MA0159.1	0.558
MA0160.1	MA0160.1	0.554
MA0162.1	MA0162.1	0.0666
MA0163.1	MA0163.1	0.252
MA0164.1	MA0164.1	0.544
MA0258.1	MA0258.1	0.487
MA0259.1	MA0259.1	0.412

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12037

Novel motif	Logo	P-value
1	1	0.208
10	10	0.3
100	100	0.238
101	101	0.108
102	102	0.509
103	103	0.908
104	104	0.931
105	105	0.531
106	106	0.181
107	107	0.251
108	108	0.396
109	109	0.0214
11	11	0.605
110	110	0.222
111	111	0.391
112	112	0.689
113	113	0.0836
114	114	0.585
115	115	0.0794
116	116	0.182
117	117	0.536
118	118	0.395
119	119	0.939
12	12	0.794
120	120	0.0871
121	121	0.232
122	122	0.507
123	123	0.00447
124	124	0.0755
125	125	0.247
126	126	0.428
127	127	0.979
128	128	0.988
129	129	0.689
13	13	0.27
130	130	0.0898
131	131	0.0294
132	132	0.437
133	133	0.377
134	134	0.121
135	135	0.93
136	136	0.0478
137	137	0.0185
138	138	0.171
139	139	0.168
14	14	0.808
140	140	0.557
141	141	0.984
142	142	0.259
143	143	0.633
144	144	0.887
145	145	0.836
146	146	0.233
147	147	0.302
148	148	0.0123
149	149	0.274
15	15	0.314
150	150	0.263
151	151	0.429
152	152	0.0463
153	153	0.0442
154	154	0.254
155	155	0.304
156	156	0.285
157	157	0.594
158	158	0.528
159	159	0.723
16	16	0.0973
160	160	0.0751
161	161	0.0936
162	162	0.27
163	163	0.895
164	164	0.368
165	165	0.711
166	166	0.802
167	167	0.12
168	168	0.79
169	169	0.0891
17	17	0.188
18	18	0.787
19	19	0.288
2	2	0.0739
20	20	0.847
21	21	0.925
22	22	0.0736
23	23	0.858
24	24	0.711
25	25	0.559
26	26	0.42
27	27	0.558
28	28	0.474
29	29	0.304
3	3	0.621
30	30	0.063
31	31	0.481
32	32	5.65071e-9
33	33	0.362
34	34	0.359
35	35	0.16
36	36	0.278
37	37	0.589
38	38	0.898
39	39	0.318
4	4	0.747
40	40	0.00839
41	41	0.341
42	42	0.357
43	43	0.951
44	44	0.558
45	45	0.183
46	46	0.902
47	47	0.834
48	48	0.548
49	49	0.342
5	5	0.152
50	50	0.491
51	51	0.461
52	52	0.547
53	53	0.284
54	54	0.575
55	55	0.373
56	56	0.527
57	57	0.764
58	58	0.259
59	59	0.0592
6	6	0.739
60	60	0.994
61	61	0.782
62	62	0.153
63	63	0.991
64	64	0.351
65	65	0.499
66	66	0.531
67	67	0.732
68	68	0.787
69	69	0.0147
7	7	0.989
70	70	0.518
71	71	0.602
72	72	0.728
73	73	0.028
74	74	0.0292
75	75	0.604
76	76	0.159
77	77	0.00495
78	78	0.938
79	79	0.0113
8	8	0.97
80	80	0.78
81	81	0.19
82	82	0.885
83	83	0.843
84	84	0.287
85	85	0.986
86	86	0.622
87	87	0.159
88	88	0.276
89	89	0.0996
9	9	0.338
90	90	0.0166
91	91	0.586
92	92	0.247
93	93	0.764
94	94	0.557
95	95	0.0961
96	96	0.218
97	97	0.484
98	98	0.823
99	99	0.0161

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12037

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000136 human placental epithelial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0002577 (placental epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001987 (placenta)
0005156 (reproductive structure)
0004119 (endoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000136 (human placental epithelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001987,UBERON:0005795,UBERON:0000995,UBERON:0003134,UBERON:0000926,UBERON:0000479,UBERON:0005156,UBERON:0000064,UBERON:0000077,UBERON:0000062,UBERON:0004120,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0000990,UBERON:0002050,UBERON:0004923,UBERON:0005423,UBERON:0005631,UBERON:0000467,UBERON:0001062,UBERON:0000478,UBERON:0005291,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0000925,UBERON:0006598,UBERON:0000158,UBERON:0002532,UBERON:0003124,UBERON:0003100,UBERON:0000474,UBERON:0003081,UBERON:0006595,UBERON:0006603,UBERON:0004872,UBERON:0004340
+|DRA_sample_Accession=CAGE@SAMD00004672
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000548,CL:0000012,CL:0000063,CL:0000066,CL:0002371,CL:0000004,CL:0000349,CL:0000255,CL:0002577
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004672
+|accession_numbers=CAGE;DRX008406;DRR009278;DRZ000703;DRZ002088;DRZ012053;DRZ013438
+|accession_numbers_RNASeq=sRNA-Seq;DRX037114;DRR041480;DRZ007122
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001987,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0003100,UBERON:0000474
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000349,CL:0000255,CL:0002577
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000136
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr5:153857778..153857794,-!p1@HAND1!2.92!831.57!HAND1;;chr2:19558373..19558392,-!p1@OSR1!2.13!348.96!OSR1;;chr19:46801639..46801699,+!p1@HIF3A!2.01!101.60!HIF3A;;chr10:8096631..8096660,+!p1@GATA3!1.91!96.16!GATA3;;chr3:111314186..111314204,-!p1@ZBED2!1.87!72.88!ZBED2;;chr19:46800289..46800327,+!p2@HIF3A!1.87!72.88!HIF3A;;chr8:102504651..102504683,+!p1@GRHL2!1.71!50.80!GRHL2;;chr17:7493405..7493419,-!p1@SOX15!1.70!49.59!SOX15;;chr10:8096772..8096787,+!p2@GATA3!1.61!47.17!GATA3;;chr1:38512457..38512474,-!p1@POU3F1!1.61!42.94!POU3F1;;chr5:3595977..3595999,+!p1@IRX1!1.59!37.80!IRX1;;chr6:10412600..10412637,-!p1@TFAP2A!1.58!60.48!TFAP2A;;chr20:39317868..39317884,-!p1@MAFB!1.57!411.25!MAFB;;chr5:3595934..3595957,+!p2@IRX1!1.57!36.29!IRX1;;chr4:188916918..188916942,+!p1@ZFP42!1.56!35.08!ZFP42;;chr5:153857800..153857812,-!p2@HAND1!1.55!34.47!HAND1;;chr11:46299199..46299233,+!p1@CREB3L1!1.54!168.43!CREB3L1;;chr8:49833948..49833973,-!p2@SNAI2!1.50!185.67!SNAI2;;chr6:10415276..10415341,-!p2@TFAP2A!1.48!35.08!TFAP2A;;chr8:49833978..49833996,-!p1@SNAI2!1.45!533.11!SNAI2;;chr5:2751762..2751784,-!p1@IRX2!1.43!25.70!IRX2;;chr5:3595961..3595975,+!p3@IRX1!1.41!24.80!IRX1;;chr8:102504690..102504704,+!p3@GRHL2!1.41!24.49!GRHL2;;chr20:55204351..55204377,+!p1@TFAP2C!1.40!30.84!TFAP2C;;chr11:46299539..46299620,+!p2@CREB3L1!1.36!36.89!CREB3L1;;chr4:174451370..174451387,-!p1@HAND2!1.36!21.77!HAND2;;chr8:55370487..55370503,+!p1@SOX17!1.32!19.66!SOX17;;chr1:209979467..209979494,-!p1@IRF6!1.30!21.47!IRF6;;chr4:174450089..174450153,-!p2@HAND2!1.30!19.05!HAND2;;chr19:46806868..46806883,+!p3@HIF3A!1.29!18.45!HIF3A;;chr2:46524897..46524911,+!p2@EPAS1!1.28!50.20!EPAS1;;chr16:31076332..31076388,-!p3@ZNF668!1.22!15.42!ZNF668;;chr8:102504979..102505010,+!p2@GRHL2!1.22!15.42!GRHL2;;chr10:8095593..8095625,+!p3@GATA3!1.20!17.24!GATA3;;chr10:48355030..48355090,+!p1@ZNF488!1.19!18.75!ZNF488;;chr1:59249732..59249749,-!p2@JUN!1.17!164.80!JUN;;chr5:153857819..153857824,-!p3@HAND1!1.16!13.31!HAND1;;chr11:113930425..113930471,+!p1@ZBTB16!1.14!18.45!ZBTB16;;chr9:110251836..110251887,-!p4@KLF4!1.14!16.93!KLF4;;chr6:10415484..10415508,-!p3@TFAP2A!1.12!12.10!TFAP2A;;chr9:110252035..110252057,-!p1@KLF4!1.09!179.62!KLF4;;chr2:19558327..19558334,-!p2@OSR1!1.09!11.19!OSR1;;chr6:10412392..10412409,-!p4@TFAP2A!1.08!12.70!TFAP2A;;chr5:174151553..174151610,+!p1@MSX2!1.06!17.54!MSX2;;chr17:46132044..46132080,+!p4@NFE2L1!1.06!10.58!NFE2L1;;chr2:5832508..5832524,+!p1@SOX11!1.05!10.28!SOX11;;chr12:66218836..66218888,+!p1@HMGA2!1.04!94.65!HMGA2;;chr15:96869255..96869291,+!p6@NR2F2!1.04!18.14!NR2F2;;chr6:32095523..32095564,-!p2@ATF6B!1.04!13.61!ATF6B;;chr2:16080659..16080685,+!p1@MYCN!1.03!9.68!MYCN;;chr20:42295745..42295765,+!p1@MYBL2!1.02!156.94!MYBL2;;chr20:18038521..18038571,-!p1@OVOL2!1.02!9.37!OVOL2;;chr17:7492684..7492778,-!p2@SOX15!0.99!18.75!SOX15;;chr15:96869511..96869525,+!p16@NR2F2!0.95!8.77!NR2F2;;chr20:42295713..42295738,+!p2@MYBL2!0.94!47.48!MYBL2;;chr6:85473156..85473210,-!p2@TBX18!0.93!9.37!TBX18;;chr4:299227..299272,-!p1@ZNF732!0.93!7.56!ZNF732;;chr8:80679993..80680011,-!p1@HEY1!0.92!10.89!HEY1;;chr1:6479968..6479986,-!p1@HES2!0.92!7.26!HES2;;chr11:46333934..46333963,+!p5@CREB3L1!0.92!7.26!CREB3L1;;chr3:111314230..111314241,-!p2@ZBED2!0.92!7.26!ZBED2;;chr8:28243785..28243799,-!p6@ZNF395!0.91!8.77!ZNF395;;chr14:75988771..75988826,+!p1@BATF!0.90!9.37!BATF;;chr9:110250697..110250738,-!p2@KLF4!0.90!8.16!KLF4;;chr5:2751785..2751808,-!p2@IRX2!0.90!6.95!IRX2;;chr6:10412576..10412599,-!p5@TFAP2A!0.90!6.95!TFAP2A;;chr15:96869292..96869320,+!p15@NR2F2!0.89!9.98!NR2F2;;chr5:176738887..176738934,-!p1@MXD3!0.88!46.57!MXD3;;chr16:67881588..67881612,-!p2@CENPT!0.88!9.07!CENPT;;chr10:8100691..8100732,+!p5@GATA3!0.87!6.35!GATA3;;chr2:60780607..60780624,-!p2@BCL11A!0.85!19.66!BCL11A;;chr2:231084820..231084836,-!p5@SP110!0.83!6.65!SP110;;chr5:3596206..3596210,+!p4@IRX1!0.83!5.75!IRX1;;chr1:59249707..59249727,-!p1@JUN!0.82!252.50!JUN;;chr11:47236584..47236679,+!p1@DDB2!0.82!65.32!DDB2;;chr19:926055..926068,+!p2@ARID3A!0.81!12.70!ARID3A;;chr8:28243813..28243839,-!p4@ZNF395!0.81!10.28!ZNF395;;chr19:17356189..17356221,-!p2@NR2F6!0.81!9.37!NR2F6;;chr17:45928443..45928473,-!p2@SP6!0.81!5.44!SP6;;chr6:10413188..10413249,-!p7@TFAP2A!0.81!5.44!TFAP2A;;chr8:102504932..102504952,+!p4@GRHL2!0.81!5.44!GRHL2;;chrY:21906594..21906622,-!p1@KDM5D!0.81!5.44!KDM5D;;chrX:106960285..106960299,-!p1@TSC22D3!0.80!156.34!TSC22D3;;chr16:29817841..29817865,+!p1@MAZ!0.80!123.38!MAZ;;chr3:24536253..24536328,-!p1@THRB!0.80!10.58!THRB;;chr2:46524878..46524891,+!p3@EPAS1!0.80!9.68!EPAS1;;chr19:7580944..7581031,+!p1@ZNF358!0.79!171.15!ZNF358;;chr19:45908292..45908374,-!p1@PPP1R13L!0.79!49.89!PPP1R13L;;chr19:1592714..1592762,-!p1@MBD3!0.79!42.64!MBD3;;chr9:117150254..117150271,-!p1@AKNA!0.79!15.12!AKNA;;chr1:33721900..33721921,+!p2@ZNF362!0.79!13.31!ZNF362;;chr20:2673383..2673441,+!p1@EBF4!0.79!8.47!EBF4;;chr11:46299443..46299459,+!p4@CREB3L1!0.79!5.14!CREB3L1;;chr13:736331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574!0.36!23.59!ZNF574;;chr22:21356378..21356422,-!p2@THAP7!0.36!17.84!THAP7;;chr17:17740330..17740349,-!p3@SREBF1!0.36!13.31!SREBF1;;chr17:7382935..7382961,-!p2@ZBTB4!0.36!12.10!ZBTB4;;chr6:43138999..43139017,+!p2@SRF!0.36!11.79!SRF;;chr19:35759976..35760042,+!p4@USF2!0.36!10.28!USF2;;chr11:46722560..46722595,+!p1@ZNF408!0.36!10.28!ZNF408;;chr19:22034809..22034878,-!p2@ZNF43!0.36!6.65!ZNF43;;chr2:239756671..239756732,+!p1@TWIST2!0.36!6.05!TWIST2;;chr1:27022839..27022890,+!p3@ARID1A!0.36!5.44!ARID1A;;chr1:59249645..59249656,-!p4@JUN!0.36!4.54!JUN;;chr17:46622070..46622109,-!p1@HOXB2!0.36!3.93!HOXB2;;chr18:3449720..3449749,+!p2@TGIF1!0.36!3.63!TGIF1;;chr11:47270436..47270464,+!p2@NR1H3!0.36!3.63!NR1H3;;chr11:61520075..61520136,+!p1@C11orf9!0.36!3.63!C11orf9;;chr1:23857698..23857733,-!p1@E2F2!0.36!3.02!E2F2;;chr1:247171347..247171366,-!p2@ZNF695!0.36!3.02!ZNF695;;chr19:45261550..45261641,+!p6@BCL3!0.36!2.72!BCL3;;chr16:30418894..30418909,+!p2@ZNF771!0.36!2.72!ZNF771;;chr19:50435736..50435781,+!p3@ATF5!0.36!2.12!ATF5;;chr19:48774586..48774670,+!p1@ZNF114!0.36!1.81!ZNF114;;chr12:72056749..72056767,+!p6@THAP2!0.36!1.51!THAP2;;chr3:39195075..39195088,-!p1@CSRNP1!0.35!12.10!CSRNP1;;chr19:50169013..50169062,-!p2@IRF3!0.35!11.19!IRF3;;chr16:2059797..2059837,-!p1@ZNF598!0.35!7.56!ZNF598;;chr11:62369352..62369373,-!p5@MTA2!0.35!7.26!MTA2;;chr22:20748434..20748455,+!p1@ZNF74!0.35!5.75!ZNF74;;chr15:31618903..31618962,+!p3@KLF13!0.35!4.84!KLF13;;chr15:96874244..96874259,+!p5@NR2F2!0.35!4.23!NR2F2;;chr6:41514005..41514026,+!p3@FOXP4!0.35!3.63!FOXP4;;chr16:31454084..31454115,-!p1@ZNF843!0.35!1.51!ZNF843;;chr1:170633262..170633285,+!p3@PRRX1!0.35!1.51!PRRX1;;chr21:36260980..36261011,-!p1@RUNX1!0.34!57.45!RUNX1;;chr22:21356016..21356105,-!p1@THAP7!0.34!30.84!THAP7;;chr13:41635512..41635539,-!p2@ELF1!0.34!10.58!ELF1;;chr6:34205372..34205412,+!p5@HMGA1!0.34!9.37!HMGA1;;chr19:19516464..19516492,+!p4@GATAD2A!0.34!9.37!GATAD2A;;chr19:19303619..19303651,+!p2@RFXANK!0.34!6.95!RFXANK;;chr2:242576641..242576731,-!p2@THAP4!0.34!6.95!THAP4;;chr1:164528445..164528459,+!p2@PBX1!0.34!5.44!PBX1;;chr15:37392616..37392638,-!p2@MEIS2!0.34!5.44!MEIS2;;chr19:59084872..59084920,-!p2@MZF1!0.34!4.54!MZF1;;chr21:36262032..36262062,-!p5@RUNX1!0.34!4.54!RUNX1;;chr20:48807091..48807123,+!p7@CEBPB!0.34!3.63!CEBPB;;chr15:96873861..96873872,+!p9@NR2F2!0.34!3.33!NR2F2;;chr12:53853054..53853092,+!p6@PCBP2!0.34!3.02!PCBP2;;chr16:3185051..3185068,+!p3@ZNF213!0.34!2.42!ZNF213;;chr2:174830540..174830563,-!p8@SP3!0.34!2.12!SP3;;chr11:12696071..12696086,+!p3@TEAD1!0.34!1.81!TEAD1;;chr17:46622205..46622218,-!p3@HOXB2!0.34!1.51!HOXB2;;chr11:46316699..46316719,+!p10@CREB3L1!0.34!1.21!CREB3L1;;chr12:2968536..2968539,-!p3@FOXM1!0.34!1.21!FOXM1;;chr12:57914700..57914737,+!p7@MBD6!0.34!1.21!MBD6;;chr14:37131058..37131139,+!p1@PAX9!0.34!1.21!PAX9;;chr9:132427883..132427951,+!p2@PRRX2!0.34!1.21!PRRX2;;chr2:96012277..96012290,+!p5@KCNIP3!0.34!1.21!KCNIP3;;chr2:96012298..96012317,+!p6@KCNIP3!0.34!1.21!KCNIP3;;chr3:138665937..138665968,-!p1@FOXL2!0.34!1.21!FOXL2;;chr3:138665969..138665993,-!p2@FOXL2!0.34!1.21!FOXL2;;chr3:24536231..24536249,-!p4@THRB!0.34!1.21!THRB;;chr3:24536332..24536358,-!p2@THRB!0.34!1.21!THRB;;chr19:47523058..47523114,+!p1@NPAS1!0.34!1.21!NPAS1;;chr1:42801540..42801562,-!p4@FOXJ3!0.34!1.21!FOXJ3;;chr20:55205791..55205817,+!p3@TFAP2C!0.34!1.21!TFAP2C;;chr5:124082548..124082571,-!p9@ZNF608!0.34!1.21!ZNF608;;chr5:134369879..134369898,-!p2@PITX1!0.34!1.21!PITX1;;chr6:10419824..10419840,-!p9@TFAP2A!0.34!1.21!TFAP2A;;chr6:10419884..10419898,-!p11@TFAP2A!0.34!1.21!TFAP2A;;chr6:85473227..85473243,-!p5@TBX18!0.34!1.21!TBX18;;chr19:18392422..18392440,-!p1@JUND!0.33!266.71!JUND;;chr3:52008016..52008071,-!p1@ABHD14A-ACY1,p1@ABHD14B,p1@PCBP4!0.33!110.98!PCBP4;;chr8:145159376..145159407,+!p1@MAF1!0.33!80.13!MAF1;;chr20:62601243..62601291,-!p1@ZNF512B!0.33!18.45!ZNF512B;;chr19:1592828..1592910,-!p2@MBD3!0.33!14.82!MBD3;;chrX:129244454..129244488,-!p1@ELF4!0.33!13.31!ELF4;;chr16:30621663..30621718,-!p1@ZNF689!0.33!8.77!ZNF689;;chr19:2819854..2819891,+!p1@ZNF554!0.33!6.35!ZNF554;;chr19:58095501..58095535,+!p1@ZIK1!0.33!6.05!ZIK1;;chr1:33938236..33938267,+!p1@ZSCAN20!0.33!4.23!ZSCAN20;;chr19:6280007..6280019,-!p3@MLLT1!0.33!3.02!MLLT1;;chr2:242576946..242576996,-!p4@THAP4!0.33!3.02!THAP4;;chr19:58570605..58570655,+!p1@ZNF135!0.33!2.72!ZNF135;;chr17:46621101..46621143,-!p7@HOXB2!0.33!1.81!HOXB2;;chr17:41623075..41623101,-!p9@ETV4!0.33!1.51!ETV4;;chr4:2264015..2264041,-!p4@MXD4!0.33!1.51!MXD4;;chr18:3450161..3450183,+!p1@TGIF1!0.32!65.01!TGIF1;;chr9:2015335..2015370,+!p1@SMARCA2!0.32!22.68!SMARCA2;;chr14:62162258..62162269,+!p2@HIF1A!0.32!17.84!HIF1A;;chr1:249132512..249132547,+!p2@ZNF672!0.32!10.58!ZNF672;;chr16:4817129..4817198,-!p1@ZNF500!0.32!9.68!ZNF500;;chr16:4366021..4366045,+!p@chr16:4366021..4366045,+!0.32!8.47!GLIS2;;chr19:36545128..36545203,-!p1@THAP8!0.32!8.16!THAP8;;chr16:30546141..30546240,-!p1@ZNF747,p2@ZNF768!0.32!6.95!ZNF747;;chr1:153940354..153940395,+!p1@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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002577;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000158;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001987;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003124;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 43: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Placental%2520Epithelial%2520Cells%252c%2520donor3.CNhs12037.11427-118G5.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Placental%2520Epithelial%2520Cells%252c%2520donor3.CNhs12037.11427-118G5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Placental%2520Epithelial%2520Cells%252c%2520donor3.CNhs12037.11427-118G5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Placental%2520Epithelial%2520Cells%252c%2520donor3.CNhs12037.11427-118G5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Placental%2520Epithelial%2520Cells%252c%2520donor3.CNhs12037.11427-118G5.hg38.nobarcode.ctss.bed.gz
 |id=FF:11427-118G5
 |is_a=EFO:0002091;;FF:0000136
 |is_obsolete=
+|library_id=CNhs12037
+|library_id_phase_based=2:CNhs12037
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11427
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10008.ACTTGA.11427
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11427
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10008.ACTTGA.11427
 |name=Placental Epithelial Cells, donor3
 |namespace=FANTOM5
@@ Line 44: / Line 64: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12037,LSID837,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10008,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=118
 |rna_catalog_number=CA230-R10f
@@ Line 58: / Line 81: @@
 |rna_tube_id=118G5
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10008.ACTTGA
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 80: / Line 105: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11427-118G5;search_select_hide=table117:FF:11427-118G5
 }}

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