FF:11473-119C6: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00005241 | ||
|accession_numbers=CAGE;DRX008097;DRR008969;DRZ000394;DRZ001779 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005241 | ||
|accession_numbers=CAGE;DRX008097;DRR008969;DRZ000394;DRZ001779;DRZ011744;DRZ013129 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037183;DRR041549;DRZ007191 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0003688,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0004457,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004923,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002323,UBERON:0000042,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0002417,UBERON:0002358,UBERON:0000916,UBERON:0003684,UBERON:0001178 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0003688,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0004457,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004923,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002323,UBERON:0000042,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0002417,UBERON:0002358,UBERON:0000916,UBERON:0003684,UBERON:0001178 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000325,CL:0000255,CL:0000136,CL:0002615 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000325,CL:0000255,CL:0000136,CL:0002615 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase= | |data_phase=2 | ||
|datafreeze_phase= | |datafreeze_phase=2 | ||
|def= | |def= | ||
|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.57!370.01!TCF21;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.56!35.52!ZBED1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.55!34.25!HOXC5;;chr5:92918919..92918942,+!p1@NR2F1!1.54!145.46!NR2F1;;chr19:47523058..47523114,+!p1@NPAS1!1.48!29.18!NPAS1;;chr18:53068911..53068935,-!p4@TCF4!1.44!30.16!TCF4;;chr9:96717629..96717644,-!p1@BARX1!1.44!26.36!BARX1;;chr5:92919100..92919135,+!p3@NR2F1!1.41!29.60!NR2F1;;chr2:19558373..19558392,-!p1@OSR1!1.39!63.85!OSR1;;chr2:119605214..119605230,-!p1@EN1!1.38!23.12!EN1;;chr12:54402745..54402788,+!p1@HOXC8!1.34!20.72!HOXC8;;chrX:106960180..106960197,-!p2@TSC22D3!1.33!75.97!TSC22D3;;chr4:174450089..174450153,-!p2@HAND2!1.32!20.02!HAND2;;chr4:174451370..174451387,-!p1@HAND2!1.32!20.02!HAND2;;chr14:62162258..62162269,+!p2@HIF1A!1.26!162.24!HIF1A;;chr11:46299199..46299233,+!p1@CREB3L1!1.26!87.53!CREB3L1;;chr1:170632285..170632309,+!p1@PRRX1!1.25!19.17!PRRX1;;chr6:19837592..19837621,+!p1@ID4!1.23!95.71!ID4;;chr14:62162285..62162296,+!p3@HIF1A!1.22!80.77!HIF1A;;chr15:96874145..96874166,+!p7@NR2F2!1.22!30.02!NR2F2;;chr15:96869255..96869291,+!p6@NR2F2!1.20!27.06!NR2F2;;chr3:126076242..126076257,-!p1@KLF15!1.20!18.32!KLF15;;chr2:239756671..239756732,+!p1@TWIST2!1.18!44.82!TWIST2;;chr11:46299539..46299620,+!p2@CREB3L1!1.18!24.10!CREB3L1;;chr11:113930425..113930471,+!p1@ZBTB16!1.18!20.16!ZBTB16;;chr1:23885981..23886002,-!p1@ID3!1.16!2297.84!ID3;;chr11:47279504..47279563,+!p1@NR1H3!1.16!30.16!NR1H3;;chr15:42749722..42749739,-!p2@ZFP106!1.16!23.82!ZFP106;;chr17:46682321..46682362,-!p1@HOXB6!1.15!12.97!HOXB6;;chr8:49833948..49833973,-!p2@SNAI2!1.14!81.47!SNAI2;;chr8:25902876..25902936,-!p1@EBF2!1.14!12.83!EBF2;;chr2:239756739..239756755,+!p2@TWIST2!1.13!21.43!TWIST2;;chr5:92918956..92918969,+!p4@NR2F1!1.13!13.67!NR2F1;;chr20:30193083..30193098,+!p1@ID1!1.10!932.84!ID1;;chr5:92919068..92919082,+!p5@NR2F1!1.10!13.81!NR2F1;;chr18:19749386..19749404,+!p2@GATA6!1.09!16.07!GATA6;;chr7:73038839..73038862,-!p1@MLXIPL!1.09!11.42!MLXIPL;;chr7:150946015..150946070,-!p3@SMARCD3!1.08!23.82!SMARCD3;;chr12:80085061..80085119,-!p6@PAWR!1.08!17.48!PAWR;;chr19:50432453..50432468,+!p1@ATF5!1.06!585.95!ATF5;;chr19:46801639..46801699,+!p1@HIF3A!1.06!10.57!HIF3A;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.06!10.57!HOXC5;;chr7:27183263..27183284,-!p2@HOXA5!1.06!10.57!HOXA5;;chr8:72756637..72756664,-!p3@MSC!1.05!11.56!MSC;;chr7:27192185..27192209,-!p1@HOXA3!1.05!10.15!HOXA3;;chr10:31610110..31610159,+!p2@ZEB1!1.05!10.15!ZEB1;;chr9:132427883..132427951,+!p2@PRRX2!1.05!10.15!PRRX2;;chr15:96874012..96874042,+!p2@NR2F2!1.04!90.92!NR2F2;;chr18:19749541..19749557,+!p1@GATA6!1.04!32.00!GATA6;;chr5:158526917..158526932,-!p1@EBF1!1.04!25.23!EBF1;;chr15:96873984..96873999,+!p3@NR2F2!1.02!71.46!NR2F2;;chr8:106330656..106330684,+!p1@ZFPM2!0.99!23.40!ZFPM2;;chr2:119604456..119604501,-!p2@EN1!0.98!8.46!EN1;;chr10:114889045..114889074,+!p12@TCF7L2!0.98!8.46!TCF7L2;;chr15:96874244..96874259,+!p5@NR2F2!0.97!20.58!NR2F2;;chr2:8822176..8822196,+!p1@ID2!0.96!1165.27!ID2;;chrX:106960285..106960299,-!p1@TSC22D3!0.96!227.22!TSC22D3;;chrX:106960221..106960236,-!p3@TSC22D3!0.96!22.98!TSC22D3;;chr9:132427972..132428056,+!p1@PRRX2!0.96!10.85!PRRX2;;chr17:46675420..46675465,-!p3@HOXB6!0.95!9.16!HOXB6;;chr6:144329384..144329405,-!p1@PLAGL1!0.94!91.90!PLAGL1;;chr7:27183291..27183324,-!p1@HOXA5!0.94!7.61!HOXA5;;chr8:72756667..72756736,-!p2@MSC!0.93!12.12!MSC;;chr1:170632959..170632987,+!p4@PRRX1!0.93!8.32!PRRX1;;chr8:49833978..49833996,-!p1@SNAI2!0.92!157.73!SNAI2;;chr17:46688334..46688385,-!p1@HOXB7!0.92!10.71!HOXB7;;chr10:131762504..131762555,-!p1@EBF3!0.92!7.33!EBF3;;chr15:96876966..96877017,+!p12@NR2F2!0.91!10.43!NR2F2;;chr2:85981073..85981091,+!p5@ATOH8!0.91!7.19!ATOH8;;chr17:1959369..1959388,+!p2@HIC1!0.90!19.17!HIC1;;chr5:92919375..92919438,+!p6@NR2F1!0.90!7.47!NR2F1;;chr12:54393880..54393962,+!p1@HOXC9!0.90!6.91!HOXC9;;chr17:46687959..46688007,-!p2@HOXB7!0.89!9.58!HOXB7;;chr15:96869114..96869160,+!p11@NR2F2!0.89!9.44!NR2F2;;chr8:72756213..72756243,-!p5@MSC!0.89!8.88!MSC;;chr15:96869222..96869251,+!p18@NR2F2!0.89!8.03!NR2F2;;chr7:27196267..27196311,-!p1@HOXA7!0.89!6.77!HOXA7;;chr15:96874216..96874236,+!p13@NR2F2!0.88!10.57!NR2F2;;chr3:126076264..126076305,-!p2@KLF15!0.88!9.44!KLF15;;chr10:77161504..77161530,-!p1@ZNF503!0.87!91.34!ZNF503;;chr8:72756267..72756296,-!p4@MSC!0.87!9.58!MSC;;chr1:170633058..170633084,+!p5@PRRX1!0.86!6.20!PRRX1;;chr12:54394309..54394336,+!p2@HOXC9!0.85!6.06!HOXC9;;chrX:106960249..106960260,-!p5@TSC22D3!0.84!9.73!TSC22D3;;chr9:96717678..96717689,-!p2@BARX1!0.84!5.92!BARX1;;chr7:27183191..27183214,-!p4@HOXA5!0.84!5.92!HOXA5;;chr10:63809013..63809041,+!p3@ARID5B!0.83!33.97!ARID5B;;chr7:150945754..150945789,-!p2@SMARCD3!0.83!18.61!SMARCD3;;chr11:12696071..12696086,+!p3@TEAD1!0.83!7.75!TEAD1;;chr5:72744594..72744609,-!p1@FOXD1!0.81!27.06!FOXD1;;chr2:85980951..85981004,+!p1@ATOH8!0.81!9.30!ATOH8;;chr2:85981107..85981120,+!p3@ATOH8!0.81!5.50!ATOH8;;chr3:12392991..12393030,+!p7@PPARG!0.81!5.50!PPARG;;chr13:37494275..37494304,-!p2@SMAD9!0.81!5.50!SMAD9;;chr11:113930401..113930422,+!p3@ZBTB16!0.80!5.36!ZBTB16;;chr12:54410948..54410992,+!p3@HOXC5!0.80!5.36!HOXC5;;chr13:37494248..37494260,-!p3@SMAD9!0.80!5.36!SMAD9;;chr2:85981027..85981047,+!p8@ATOH8!0.80!5.36!ATOH8;;chr15:96869292..96869320,+!p15@NR2F2!0.79!7.75!NR2F2;;chr14:75894714..75894733,+!p1@JDP2!0.78!157.02!JDP2;;chr8:106330696..106330719,+!p2@ZFPM2!0.78!6.62!ZFPM2;;chr14:95236551..95236576,-!p2@GSC!0.78!5.07!GSC;;chr17:46690839..46690884,-!p1@HOXB8!0.78!5.07!HOXB8;;chr10:114889016..114889037,+!p15@TCF7L2!0.78!5.07!TCF7L2;;chr12:54422217..54422239,+!p3@HOXC6!0.78!5.07!HOXC6;;chr13:41240737..41240787,-!p1@FOXO1!0.77!63.57!FOXO1;;chr13:41240717..41240735,-!p2@FOXO1!0.76!35.94!FOXO1;;chr17:46621937..46621966,-!p2@HOXB2!0.76!13.81!HOXB2;;chr2:121493492..121493537,+!p2@GLI2!0.76!8.18!GLI2;;chr17:59477233..59477263,+!p1@TBX2!0.75!15.65!TBX2;;chr3:170076314..170076334,+!p2@SKIL!0.75!6.20!SKIL;;chr2:85980919..85980942,+!p4@ATOH8!0.75!4.93!ATOH8;;chr3:12392932..12392962,+!p8@PPARG!0.75!4.65!PPARG;;chr12:54394416..54394467,+!p5@HOXC9!0.75!4.65!HOXC9;;chr14:62162224..62162254,+!p1@HIF1A!0.74!727.75!HIF1A;;chr2:46524537..46524553,+!p1@EPAS1!0.74!495.60!EPAS1;;chr4:4861385..4861398,+!p1@MSX1!0.74!14.52!MSX1;;chr6:85473156..85473210,-!p2@TBX18!0.74!5.64!TBX18;;chr15:96873921..96873946,+!p1@NR2F2!0.73!136.58!NR2F2;;chr10:77161533..77161546,-!p2@ZNF503!0.73!19.03!ZNF503;;chr10:45495946..45495976,+!p2@ZNF22!0.73!4.37!ZNF22;;chr2:119605233..119605245,-!p8@EN1!0.73!4.37!EN1;;chr15:66994885..66994904,+!p7@SMAD6!0.73!4.37!SMAD6;;chr17:46687935..46687950,-!p3@HOXB7!0.73!4.37!HOXB7;;chr5:92918894..92918912,+!p2@NR2F1!0.72!15.22!NR2F1;;chr1:170633262..170633285,+!p3@PRRX1!0.72!4.93!PRRX1;;chr18:53068893..53068902,-!p28@TCF4!0.72!4.23!TCF4;;chr5:92919452..92919496,+!p11@NR2F1!0.72!4.23!NR2F1;;chr4:174451350..174451363,-!p3@HAND2!0.72!4.23!HAND2;;chr3:178789522..178789564,-!p2@ZMAT3!0.71!33.83!ZMAT3;;chr2:27357446..27357475,-!p2@PREB!0.71!15.79!PREB;;chr2:121493425..121493474,+!p1@GLI2!0.71!9.73!GLI2;;chr14:62203595..62203676,+!p4@HIF1A!0.71!8.32!HIF1A;;chr10:77161650..77161661,-!p4@ZNF503!0.71!6.06!ZNF503;;chr5:158526459..158526481,-!p2@EBF1!0.71!5.78!EBF1;;chr8:93074803..93074845,-!p1@RUNX1T1!0.71!4.09!RUNX1T1;;chr16:31076332..31076388,-!p3@ZNF668!0.71!4.09!ZNF668;;chr6:144289132..144289134,-!p3@PLAGL1!0.70!10.15!PLAGL1;;chr15:96874927..96874938,+!p8@NR2F2!0.70!9.30!NR2F2;;chr15:96874063..96874074,+!p10@NR2F2!0.70!7.89!NR2F2;;chr11:113930291..113930339,+!p2@ZBTB16!0.70!6.91!ZBTB16;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.69!44.82!GLIS2;;chr1:170633348..170633399,+!p2@PRRX1!0.69!5.50!PRRX1;;chr7:27183114..27183138,-!p3@HOXA5!0.69!3.95!HOXA5;;chr8:72755987..72756002,-!p7@MSC!0.69!3.95!MSC;;chr16:79634624..79634642,-!p1@MAF!0.68!16.63!MAF;;chr2:66662281..66662308,+!p1@MEIS1!0.68!14.52!MEIS1;;chr8:72756063..72756125,-!p1@MSC!0.68!8.32!MSC;;chr19:13134772..13134822,+!p2@NFIX!0.68!5.92!NFIX;;chr3:12330560..12330579,+!p1@PPARG!0.68!4.51!PPARG;;chr2:85981008..85981025,+!p7@ATOH8!0.68!3.81!ATOH8;;chr7:1577899..1577943,+!p3@MAFK!0.68!3.81!MAFK;;chr12:54402790..54402805,+!p2@HOXC8!0.68!3.81!HOXC8;;chr19:33793430..33793447,-!p1@CEBPA!0.67!17.48!CEBPA;;chr14:95236440..95236465,-!p1@GSC!0.67!3.66!GSC;;chr12:54447637..54447659,+!p4@HOXC4!0.67!3.66!HOXC4;;chr12:80085120..80085156,-!p14@PAWR!0.67!3.66!PAWR;;chr13:41635285..41635356,-!p3@ELF1!0.66!16.63!ELF1;;chr17:38498594..38498661,+!p2@RARA!0.66!13.67!RARA;;chr18:3450334..3450341,+!p15@TGIF1!0.66!4.79!TGIF1;;chr2:119605253..119605264,-!p5@EN1!0.66!3.52!EN1;;chr7:150945865..150945896,-!p4@SMARCD3!0.66!3.52!SMARCD3;;chr10:51572408..51572454,+!p3@NCOA4!0.65!23.54!NCOA4;;chr2:66662249..66662267,+!p2@MEIS1!0.65!15.08!MEIS1;;chr9:77112244..77112262,+!p1@RORB!0.65!3.95!RORB;;chr10:63809106..63809127,+!p1@ARID5B!0.64!53.00!ARID5B;;chr20:39946361..39946379,-!p2@ZHX3!0.64!11.42!ZHX3;;chr1:23696308..23696339,-!p2@ZNF436!0.64!7.89!ZNF436;;chr2:28618532..28618610,+!p4@FOSL2!0.64!6.20!FOSL2;;chr8:99956662..99956684,+!p1@OSR2!0.64!5.64!OSR2;;chr2:208031943..208031978,-!p5@KLF7!0.64!4.79!KLF7;;chr2:46612334..46612349,+!p6@EPAS1!0.64!4.65!EPAS1;;chr12:80084137..80084165,-!p10@PAWR!0.64!4.51!PAWR;;chr2:178129853..178129860,-!p14@NFE2L2!0.64!3.38!NFE2L2;;chr13:45151259..45151326,-!p2@TSC22D1!0.63!22.83!TSC22D1;;chr13:45151403..45151433,-!p5@TSC22D1!0.63!8.03!TSC22D1;;chr5:139487608..139487663,+!p3@PURA!0.63!7.75!PURA;;chr7:137686763..137686784,-!p5@CREB3L2!0.63!6.20!CREB3L2;;chr15:96875041..96875052,+!p17@NR2F2!0.63!5.07!NR2F2;;chr17:46691732..46691766,-!p4@HOXB8!0.63!3.24!HOXB8;;chr6:35454312..35454323,-!p9@TEAD3!0.63!3.24!TEAD3;;chr12:54402729..54402743,+!p3@HOXC8!0.63!3.24!HOXC8;;chr2:172967242..172967265,-!p2@DLX2!0.63!3.24!DLX2;;chrX:591524..591527,+!p1@SHOX!0.63!3.24!SHOX;;chr10:63809077..63809089,+!p5@ARID5B!0.62!7.61!ARID5B;;chr19:13134457..13134462,+!p5@NFIX!0.6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| |expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.57!370.01!TCF21;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.56!35.52!ZBED1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.55!34.25!HOXC5;;chr5:92918919..92918942,+!p1@NR2F1!1.54!145.46!NR2F1;;chr19:47523058..47523114,+!p1@NPAS1!1.48!29.18!NPAS1;;chr18:53068911..53068935,-!p4@TCF4!1.44!30.16!TCF4;;chr9:96717629..96717644,-!p1@BARX1!1.44!26.36!BARX1;;chr5:92919100..92919135,+!p3@NR2F1!1.41!29.60!NR2F1;;chr2:19558373..19558392,-!p1@OSR1!1.39!63.85!OSR1;;chr2:119605214..119605230,-!p1@EN1!1.38!23.12!EN1;;chr12:54402745..54402788,+!p1@HOXC8!1.34!20.72!HOXC8;;chrX:106960180..106960197,-!p2@TSC22D3!1.33!75.97!TSC22D3;;chr4:174450089..174450153,-!p2@HAND2!1.32!20.02!HAND2;;chr4:174451370..174451387,-!p1@HAND2!1.32!20.02!HAND2;;chr14:62162258..62162269,+!p2@HIF1A!1.26!162.24!HIF1A;;chr11:46299199..46299233,+!p1@CREB3L1!1.26!87.53!CREB3L1;;chr1:170632285..170632309,+!p1@PRRX1!1.25!19.17!PRRX1;;chr6:19837592..19837621,+!p1@ID4!1.23!95.71!ID4;;chr14:62162285..62162296,+!p3@HIF1A!1.22!80.77!HIF1A;;chr15:96874145..96874166,+!p7@NR2F2!1.22!30.02!NR2F2;;chr15:96869255..96869291,+!p6@NR2F2!1.20!27.06!NR2F2;;chr3:126076242..126076257,-!p1@KLF15!1.20!18.32!KLF15;;chr2:239756671..239756732,+!p1@TWIST2!1.18!44.82!TWIST2;;chr11:46299539..46299620,+!p2@CREB3L1!1.18!24.10!CREB3L1;;chr11:113930425..113930471,+!p1@ZBTB16!1.18!20.16!ZBTB16;;chr1:23885981..23886002,-!p1@ID3!1.16!2297.84!ID3;;chr11:47279504..47279563,+!p1@NR1H3!1.16!30.16!NR1H3;;chr15:42749722..42749739,-!p2@ZFP106!1.16!23.82!ZFP106;;chr17:46682321..46682362,-!p1@HOXB6!1.15!12.97!HOXB6;;chr8:49833948..49833973,-!p2@SNAI2!1.14!81.47!SNAI2;;chr8:25902876..25902936,-!p1@EBF2!1.14!12.83!EBF2;;chr2:239756739..239756755,+!p2@TWIST2!1.13!21.43!TWIST2;;chr5:92918956..92918969,+!p4@NR2F1!1.13!13.67!NR2F1;;chr20:30193083..30193098,+!p1@ID1!1.10!932.84!ID1;;chr5:92919068..92919082,+!p5@NR2F1!1.10!13.81!NR2F1;;chr18:19749386..19749404,+!p2@GATA6!1.09!16.07!GATA6;;chr7:73038839..73038862,-!p1@MLXIPL!1.09!11.42!MLXIPL;;chr7:150946015..150946070,-!p3@SMARCD3!1.08!23.82!SMARCD3;;chr12:80085061..80085119,-!p6@PAWR!1.08!17.48!PAWR;;chr19:50432453..50432468,+!p1@ATF5!1.06!585.95!ATF5;;chr19:46801639..46801699,+!p1@HIF3A!1.06!10.57!HIF3A;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.06!10.57!HOXC5;;chr7:27183263..27183284,-!p2@HOXA5!1.06!10.57!HOXA5;;chr8:72756637..72756664,-!p3@MSC!1.05!11.56!MSC;;chr7:27192185..27192209,-!p1@HOXA3!1.05!10.15!HOXA3;;chr10:31610110..31610159,+!p2@ZEB1!1.05!10.15!ZEB1;;chr9:132427883..132427951,+!p2@PRRX2!1.05!10.15!PRRX2;;chr15:96874012..96874042,+!p2@NR2F2!1.04!90.92!NR2F2;;chr18:19749541..19749557,+!p1@GATA6!1.04!32.00!GATA6;;chr5:158526917..158526932,-!p1@EBF1!1.04!25.23!EBF1;;chr15:96873984..96873999,+!p3@NR2F2!1.02!71.46!NR2F2;;chr8:106330656..106330684,+!p1@ZFPM2!0.99!23.40!ZFPM2;;chr2:119604456..119604501,-!p2@EN1!0.98!8.46!EN1;;chr10:114889045..114889074,+!p12@TCF7L2!0.98!8.46!TCF7L2;;chr15:96874244..96874259,+!p5@NR2F2!0.97!20.58!NR2F2;;chr2:8822176..8822196,+!p1@ID2!0.96!1165.27!ID2;;chrX:106960285..106960299,-!p1@TSC22D3!0.96!227.22!TSC22D3;;chrX:106960221..106960236,-!p3@TSC22D3!0.96!22.98!TSC22D3;;chr9:132427972..132428056,+!p1@PRRX2!0.96!10.85!PRRX2;;chr17:46675420..46675465,-!p3@HOXB6!0.95!9.16!HOXB6;;chr6:144329384..144329405,-!p1@PLAGL1!0.94!91.90!PLAGL1;;chr7:27183291..27183324,-!p1@HOXA5!0.94!7.61!HOXA5;;chr8:72756667..72756736,-!p2@MSC!0.93!12.12!MSC;;chr1:170632959..170632987,+!p4@PRRX1!0.93!8.32!PRRX1;;chr8:49833978..49833996,-!p1@SNAI2!0.92!157.73!SNAI2;;chr17:46688334..46688385,-!p1@HOXB7!0.92!10.71!HOXB7;;chr10:131762504..131762555,-!p1@EBF3!0.92!7.33!EBF3;;chr15:96876966..96877017,+!p12@NR2F2!0.91!10.43!NR2F2;;chr2:85981073..85981091,+!p5@ATOH8!0.91!7.19!ATOH8;;chr17:1959369..1959388,+!p2@HIC1!0.90!19.17!HIC1;;chr5:92919375..92919438,+!p6@NR2F1!0.90!7.47!NR2F1;;chr12:54393880..54393962,+!p1@HOXC9!0.90!6.91!HOXC9;;chr17:46687959..46688007,-!p2@HOXB7!0.89!9.58!HOXB7;;chr15:96869114..96869160,+!p11@NR2F2!0.89!9.44!NR2F2;;chr8:72756213..72756243,-!p5@MSC!0.89!8.88!MSC;;chr15:96869222..96869251,+!p18@NR2F2!0.89!8.03!NR2F2;;chr7:27196267..27196311,-!p1@HOXA7!0.89!6.77!HOXA7;;chr15:96874216..96874236,+!p13@NR2F2!0.88!10.57!NR2F2;;chr3:126076264..126076305,-!p2@KLF15!0.88!9.44!KLF15;;chr10:77161504..77161530,-!p1@ZNF503!0.87!91.34!ZNF503;;chr8:72756267..72756296,-!p4@MSC!0.87!9.58!MSC;;chr1:170633058..170633084,+!p5@PRRX1!0.86!6.20!PRRX1;;chr12:54394309..54394336,+!p2@HOXC9!0.85!6.06!HOXC9;;chrX:106960249..106960260,-!p5@TSC22D3!0.84!9.73!TSC22D3;;chr9:96717678..96717689,-!p2@BARX1!0.84!5.92!BARX1;;chr7:27183191..27183214,-!p4@HOXA5!0.84!5.92!HOXA5;;chr10:63809013..63809041,+!p3@ARID5B!0.83!33.97!ARID5B;;chr7:150945754..150945789,-!p2@SMARCD3!0.83!18.61!SMARCD3;;chr11:12696071..12696086,+!p3@TEAD1!0.83!7.75!TEAD1;;chr5:72744594..72744609,-!p1@FOXD1!0.81!27.06!FOXD1;;chr2:85980951..85981004,+!p1@ATOH8!0.81!9.30!ATOH8;;chr2:85981107..85981120,+!p3@ATOH8!0.81!5.50!ATOH8;;chr3:12392991..12393030,+!p7@PPARG!0.81!5.50!PPARG;;chr13:37494275..37494304,-!p2@SMAD9!0.81!5.50!SMAD9;;chr11:113930401..113930422,+!p3@ZBTB16!0.80!5.36!ZBTB16;;chr12:54410948..54410992,+!p3@HOXC5!0.80!5.36!HOXC5;;chr13:37494248..37494260,-!p3@SMAD9!0.80!5.36!SMAD9;;chr2:85981027..85981047,+!p8@ATOH8!0.80!5.36!ATOH8;;chr15:96869292..96869320,+!p15@NR2F2!0.79!7.75!NR2F2;;chr14:75894714..75894733,+!p1@JDP2!0.78!157.02!JDP2;;chr8:106330696..106330719,+!p2@ZFPM2!0.78!6.62!ZFPM2;;chr14:95236551..95236576,-!p2@GSC!0.78!5.07!GSC;;chr17:46690839..46690884,-!p1@HOXB8!0.78!5.07!HOXB8;;chr10:114889016..114889037,+!p15@TCF7L2!0.78!5.07!TCF7L2;;chr12:54422217..54422239,+!p3@HOXC6!0.78!5.07!HOXC6;;chr13:41240737..41240787,-!p1@FOXO1!0.77!63.57!FOXO1;;chr13:41240717..41240735,-!p2@FOXO1!0.76!35.94!FOXO1;;chr17:46621937..46621966,-!p2@HOXB2!0.76!13.81!HOXB2;;chr2:121493492..121493537,+!p2@GLI2!0.76!8.18!GLI2;;chr17:59477233..59477263,+!p1@TBX2!0.75!15.65!TBX2;;chr3:170076314..170076334,+!p2@SKIL!0.75!6.20!SKIL;;chr2:85980919..85980942,+!p4@ATOH8!0.75!4.93!ATOH8;;chr3:12392932..12392962,+!p8@PPARG!0.75!4.65!PPARG;;chr12:54394416..54394467,+!p5@HOXC9!0.75!4.65!HOXC9;;chr14:62162224..62162254,+!p1@HIF1A!0.74!727.75!HIF1A;;chr2:46524537..46524553,+!p1@EPAS1!0.74!495.60!EPAS1;;chr4:4861385..4861398,+!p1@MSX1!0.74!14.52!MSX1;;chr6:85473156..85473210,-!p2@TBX18!0.74!5.64!TBX18;;chr15:96873921..96873946,+!p1@NR2F2!0.73!136.58!NR2F2;;chr10:77161533..77161546,-!p2@ZNF503!0.73!19.03!ZNF503;;chr10:45495946..45495976,+!p2@ZNF22!0.73!4.37!ZNF22;;chr2:119605233..119605245,-!p8@EN1!0.73!4.37!EN1;;chr15:66994885..66994904,+!p7@SMAD6!0.73!4.37!SMAD6;;chr17:46687935..46687950,-!p3@HOXB7!0.73!4.37!HOXB7;;chr5:92918894..92918912,+!p2@NR2F1!0.72!15.22!NR2F1;;chr1:170633262..170633285,+!p3@PRRX1!0.72!4.93!PRRX1;;chr18:53068893..53068902,-!p28@TCF4!0.72!4.23!TCF4;;chr5:92919452..92919496,+!p11@NR2F1!0.72!4.23!NR2F1;;chr4:174451350..174451363,-!p3@HAND2!0.72!4.23!HAND2;;chr3:178789522..178789564,-!p2@ZMAT3!0.71!33.83!ZMAT3;;chr2:27357446..27357475,-!p2@PREB!0.71!15.79!PREB;;chr2:121493425..121493474,+!p1@GLI2!0.71!9.73!GLI2;;chr14:62203595..62203676,+!p4@HIF1A!0.71!8.32!HIF1A;;chr10:77161650..77161661,-!p4@ZNF503!0.71!6.06!ZNF503;;chr5:158526459..158526481,-!p2@EBF1!0.71!5.78!EBF1;;chr8:93074803..93074845,-!p1@RUNX1T1!0.71!4.09!RUNX1T1;;chr16:31076332..31076388,-!p3@ZNF668!0.71!4.09!ZNF668;;chr6:144289132..144289134,-!p3@PLAGL1!0.70!10.15!PLAGL1;;chr15:96874927..96874938,+!p8@NR2F2!0.70!9.30!NR2F2;;chr15:96874063..96874074,+!p10@NR2F2!0.70!7.89!NR2F2;;chr11:113930291..113930339,+!p2@ZBTB16!0.70!6.91!ZBTB16;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.69!44.82!GLIS2;;chr1:170633348..170633399,+!p2@PRRX1!0.69!5.50!PRRX1;;chr7:27183114..27183138,-!p3@HOXA5!0.69!3.95!HOXA5;;chr8:72755987..72756002,-!p7@MSC!0.69!3.95!MSC;;chr16:79634624..79634642,-!p1@MAF!0.68!16.63!MAF;;chr2:66662281..66662308,+!p1@MEIS1!0.68!14.52!MEIS1;;chr8:72756063..72756125,-!p1@MSC!0.68!8.32!MSC;;chr19:13134772..13134822,+!p2@NFIX!0.68!5.92!NFIX;;chr3:12330560..12330579,+!p1@PPARG!0.68!4.51!PPARG;;chr2:85981008..85981025,+!p7@ATOH8!0.68!3.81!ATOH8;;chr7:1577899..1577943,+!p3@MAFK!0.68!3.81!MAFK;;chr12:54402790..54402805,+!p2@HOXC8!0.68!3.81!HOXC8;;chr19:33793430..33793447,-!p1@CEBPA!0.67!17.48!CEBPA;;chr14:95236440..95236465,-!p1@GSC!0.67!3.66!GSC;;chr12:54447637..54447659,+!p4@HOXC4!0.67!3.66!HOXC4;;chr12:80085120..80085156,-!p14@PAWR!0.67!3.66!PAWR;;chr13:41635285..41635356,-!p3@ELF1!0.66!16.63!ELF1;;chr17:38498594..38498661,+!p2@RARA!0.66!13.67!RARA;;chr18:3450334..3450341,+!p15@TGIF1!0.66!4.79!TGIF1;;chr2:119605253..119605264,-!p5@EN1!0.66!3.52!EN1;;chr7:150945865..150945896,-!p4@SMARCD3!0.66!3.52!SMARCD3;;chr10:51572408..51572454,+!p3@NCOA4!0.65!23.54!NCOA4;;chr2:66662249..66662267,+!p2@MEIS1!0.65!15.08!MEIS1;;chr9:77112244..77112262,+!p1@RORB!0.65!3.95!RORB;;chr10:63809106..63809127,+!p1@ARID5B!0.64!53.00!ARID5B;;chr20:39946361..39946379,-!p2@ZHX3!0.64!11.42!ZHX3;;chr1:23696308..23696339,-!p2@ZNF436!0.64!7.89!ZNF436;;chr2:28618532..28618610,+!p4@FOSL2!0.64!6.20!FOSL2;;chr8:99956662..99956684,+!p1@OSR2!0.64!5.64!OSR2;;chr2:208031943..208031978,-!p5@KLF7!0.64!4.79!KLF7;;chr2:46612334..46612349,+!p6@EPAS1!0.64!4.65!EPAS1;;chr12:80084137..80084165,-!p10@PAWR!0.64!4.51!PAWR;;chr2:178129853..178129860,-!p14@NFE2L2!0.64!3.38!NFE2L2;;chr13:45151259..45151326,-!p2@TSC22D1!0.63!22.83!TSC22D1;;chr13:45151403..45151433,-!p5@TSC22D1!0.63!8.03!TSC22D1;;chr5:139487608..139487663,+!p3@PURA!0.63!7.75!PURA;;chr7:137686763..137686784,-!p5@CREB3L2!0.63!6.20!CREB3L2;;chr15:96875041..96875052,+!p17@NR2F2!0.63!5.07!NR2F2;;chr17:46691732..46691766,-!p4@HOXB8!0.63!3.24!HOXB8;;chr6:35454312..35454323,-!p9@TEAD3!0.63!3.24!TEAD3;;chr12:54402729..54402743,+!p3@HOXC8!0.63!3.24!HOXC8;;chr2:172967242..172967265,-!p2@DLX2!0.63!3.24!DLX2;;chrX:591524..591527,+!p1@SHOX!0.63!3.24!SHOX;;chr10:63809077..63809089,+!p5@ARID5B!0.62!7.61!ARID5B;;chr19:13134457..13134462,+!p5@NFIX!0.6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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000136;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002615;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001013;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001178;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002323 | |||
|ffid_belonging_in_development=CL:0000134 | |ffid_belonging_in_development=CL:0000134 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 41: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520omental%252c%2520donor1.CNhs11054.11473-119C6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520omental%252c%2520donor1.CNhs11054.11473-119C6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520omental%252c%2520donor1.CNhs11054.11473-119C6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520omental%252c%2520donor1.CNhs11054.11473-119C6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520omental%252c%2520donor1.CNhs11054.11473-119C6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11473-119C6 | |id=FF:11473-119C6 | ||
|is_a=EFO:0002091;;FF:0000039 | |is_a=EFO:0002091;;FF:0000039 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11054 | |library_id=CNhs11054 | ||
|library_id_phase_based= | |library_id_phase_based=2:CNhs11054 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11473 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10012.CGATGT.11473 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11473 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10012.CGATGT.11473 | |||
|name=Adipocyte - omental, donor1 | |name=Adipocyte - omental, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 51: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11054,LSID722,release008,COMPLETED | |profile_hcage=CNhs11054,LSID722,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10012,,, | |profile_srnaseq=SRhi10012,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 67: | Line 82: | ||
|rna_tube_id=119C6 | |rna_tube_id=119C6 | ||
|rna_weight_ug=9.9 | |rna_weight_ug=9.9 | ||
|rnaseq_library_id=SRhi10012.CGATGT | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |sample_category=primary cells | ||
Line 90: | Line 106: | ||
|top_motifs=IKZF1:2.56973078124;GZF1:2.44935904462;SRF:2.0620361035;EBF1:2.03559188307;MYBL2:2.00408596847;HIF1A:2.00178844074;TEF:1.90890462459;HES1:1.87989008662;FOXL1:1.86628049992;MAFB:1.85194849542;HMGA1,2:1.75450211178;NKX3-1:1.68839623809;TEAD1:1.6744233037;ZNF238:1.66105551654;NR3C1:1.65621617312;GCM1,2:1.63831487074;SMAD1..7,9:1.62722417001;XBP1:1.62060583572;ATF6:1.61613125656;FOXO1,3,4:1.53904364618;RXRA_VDR{dimer}:1.49025090435;TAL1_TCF{3,4,12}:1.45142461236;UFEwm:1.44446317247;NKX2-2,8:1.381149845;ESR1:1.3597800941;NFE2L1:1.3531667175;NFATC1..3:1.34590293762;NKX2-1,4:1.30918779801;ZNF423:1.30556032344;TLX1..3_NFIC{dimer}:1.28151411265;HOX{A5,B5}:1.27635824669;GLI1..3:1.27370420603;EVI1:1.27365798175;SPZ1:1.25702818364;HOX{A6,A7,B6,B7}:1.19339508726;TFAP4:1.19188925701;KLF4:1.11812595654;NHLH1,2:1.11319172169;MTE{core}:1.11277903394;MAZ:1.11261491236;AR:1.08864101019;TP53:1.07744022001;LHX3,4:1.07735339435;DBP:1.07161682948;HSF1,2:1.03701156296;NFIX:0.973030912043;HOX{A4,D4}:0.950631694511;GTF2I:0.895094524407;MTF1:0.800393448396;GATA4:0.758536187057;CDC5L:0.732787187157;bHLH_family:0.722831184322;HMX1:0.717769106334;TFAP2{A,C}:0.717395799311;TFCP2:0.700391116728;GTF2A1,2:0.66993205707;HIC1:0.665809500798;ESRRA:0.645043852218;FOXA2:0.631543816002;ZNF148:0.631092784529;PAX1,9:0.625626857497;STAT1,3:0.622686959149;MYFfamily:0.599619249793;STAT2,4,6:0.59053424145;SOX5:0.584304330327;ALX4:0.576871276801;PAX5:0.557398470974;MZF1:0.555905713276;EN1,2:0.551132826377;HAND1,2:0.54731615727;ARID5B:0.524200507775;PATZ1:0.51900596582;NR6A1:0.509530109723;TFAP2B:0.505907849888;HBP1_HMGB_SSRP1_UBTF:0.48047193298;RXR{A,B,G}:0.437668855108;TBP:0.435112431718;POU6F1:0.424788293588;MEF2{A,B,C,D}:0.408969757838;HLF:0.403544402892;TBX4,5:0.399380907619;NANOG{mouse}:0.395092306997;PAX6:0.345637634907;GFI1B:0.34464498359;NKX3-2:0.299590066403;NFE2L2:0.289722550881;ZNF384:0.287017896764;FOX{D1,D2}:0.281410636771;TGIF1:0.273199201754;HNF4A_NR2F1,2:0.262057860927;PAX4:0.175601132696;SOX17:0.160499896184;CEBPA,B_DDIT3:0.141584728319;ADNP_IRX_SIX_ZHX:0.117353186756;ZBTB6:0.112263607582;SREBF1,2:0.112058003734;FOXP3:0.0874311121791;AHR_ARNT_ARNT2:0.0812255489559;FOX{I1,J2}:0.0595079028519;HNF1A:0.0577348095703;REST:0.0363709491324;FOXD3:0.0134816184369;PRDM1:-0.000475677042322;NR1H4:-0.000893450415027;ELK1,4_GABP{A,B1}:-0.00451312622879;HOXA9_MEIS1:-0.0381355748044;AIRE:-0.0510872513604;IRF1,2:-0.0549779545047;POU3F1..4:-0.0900009051298;ZNF143:-0.0947063426106;MED-1{core}:-0.0949992419781;TLX2:-0.134539849108;ATF2:-0.138497814517;MYB:-0.153221964729;NFIL3:-0.154857899347;NRF1:-0.170306673084;XCPE1{core}:-0.174751233601;EGR1..3:-0.198584052603;RREB1:-0.201550417926;YY1:-0.208548809587;BACH2:-0.214462423758;SOX2:-0.221559683784;EP300:-0.227895956695;SP1:-0.232533944941;STAT5{A,B}:-0.234818940363;JUN:-0.243742408251;ZIC1..3:-0.251108125233;PPARG:-0.262767560736;NKX6-1,2:-0.298540735738;FOSL2:-0.30189749117;T:-0.337415846671;PAX2:-0.379965806674;PAX3,7:-0.381636730966;DMAP1_NCOR{1,2}_SMARC:-0.390138517424;NFE2:-0.393456095863;ATF5_CREB3:-0.39596387617;FOS_FOS{B,L1}_JUN{B,D}:-0.398416584803;GFI1:-0.411786597097;CRX:-0.414534778383;ZFP161:-0.423333036843;PRRX1,2:-0.434250338461;ETS1,2:-0.45776758402;TOPORS:-0.462809744005;ATF4:-0.47307711397;ZBTB16:-0.483658336385;RFX1:-0.495131544244;ELF1,2,4:-0.505359299824;FOXM1:-0.532998513745;IKZF2:-0.550719555214;BREu{core}:-0.567608082127;FOXN1:-0.570333806493;IRF7:-0.573876644269;RUNX1..3:-0.579811979812;NFKB1_REL_RELA:-0.599385710722;TFDP1:-0.599470465525;BPTF:-0.608832576942;SPI1:-0.620241762801;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.633329516314;CREB1:-0.656883853213;RBPJ:-0.659002808292;SPIB:-0.705293092049;POU5F1:-0.713565197464;NR5A1,2:-0.731685108353;ONECUT1,2:-0.750315890913;GATA6:-0.76651980286;RFX2..5_RFXANK_RFXAP:-0.784964915264;NKX2-3_NKX2-5:-0.78605426468;RORA:-0.795083675413;NANOG:-0.811594033205;FOXP1:-0.829598301067;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.866580441821;NFY{A,B,C}:-0.880237959338;VSX1,2:-0.88085400778;PAX8:-0.910544152673;LMO2:-0.936265690199;OCT4_SOX2{dimer}:-0.974042873141;FOX{F1,F2,J1}:-0.980809229382;LEF1_TCF7_TCF7L1,2:-0.985646753826;SNAI1..3:-0.999176341906;CUX2:-1.00259672917;POU1F1:-1.05357405281;PITX1..3:-1.07525139958;ZEB1:-1.10259353233;E2F1..5:-1.17217268802;CDX1,2,4:-1.23871676119;PDX1:-1.27876702773;SOX{8,9,10}:-1.28761172313;PBX1:-1.38924763916;FOXQ1:-1.42088620778;MYOD1:-1.49606461583;ALX1:-1.98251304133;POU2F1..3:-2.0045810072 | |top_motifs=IKZF1:2.56973078124;GZF1:2.44935904462;SRF:2.0620361035;EBF1:2.03559188307;MYBL2:2.00408596847;HIF1A:2.00178844074;TEF:1.90890462459;HES1:1.87989008662;FOXL1:1.86628049992;MAFB:1.85194849542;HMGA1,2:1.75450211178;NKX3-1:1.68839623809;TEAD1:1.6744233037;ZNF238:1.66105551654;NR3C1:1.65621617312;GCM1,2:1.63831487074;SMAD1..7,9:1.62722417001;XBP1:1.62060583572;ATF6:1.61613125656;FOXO1,3,4:1.53904364618;RXRA_VDR{dimer}:1.49025090435;TAL1_TCF{3,4,12}:1.45142461236;UFEwm:1.44446317247;NKX2-2,8:1.381149845;ESR1:1.3597800941;NFE2L1:1.3531667175;NFATC1..3:1.34590293762;NKX2-1,4:1.30918779801;ZNF423:1.30556032344;TLX1..3_NFIC{dimer}:1.28151411265;HOX{A5,B5}:1.27635824669;GLI1..3:1.27370420603;EVI1:1.27365798175;SPZ1:1.25702818364;HOX{A6,A7,B6,B7}:1.19339508726;TFAP4:1.19188925701;KLF4:1.11812595654;NHLH1,2:1.11319172169;MTE{core}:1.11277903394;MAZ:1.11261491236;AR:1.08864101019;TP53:1.07744022001;LHX3,4:1.07735339435;DBP:1.07161682948;HSF1,2:1.03701156296;NFIX:0.973030912043;HOX{A4,D4}:0.950631694511;GTF2I:0.895094524407;MTF1:0.800393448396;GATA4:0.758536187057;CDC5L:0.732787187157;bHLH_family:0.722831184322;HMX1:0.717769106334;TFAP2{A,C}:0.717395799311;TFCP2:0.700391116728;GTF2A1,2:0.66993205707;HIC1:0.665809500798;ESRRA:0.645043852218;FOXA2:0.631543816002;ZNF148:0.631092784529;PAX1,9:0.625626857497;STAT1,3:0.622686959149;MYFfamily:0.599619249793;STAT2,4,6:0.59053424145;SOX5:0.584304330327;ALX4:0.576871276801;PAX5:0.557398470974;MZF1:0.555905713276;EN1,2:0.551132826377;HAND1,2:0.54731615727;ARID5B:0.524200507775;PATZ1:0.51900596582;NR6A1:0.509530109723;TFAP2B:0.505907849888;HBP1_HMGB_SSRP1_UBTF:0.48047193298;RXR{A,B,G}:0.437668855108;TBP:0.435112431718;POU6F1:0.424788293588;MEF2{A,B,C,D}:0.408969757838;HLF:0.403544402892;TBX4,5:0.399380907619;NANOG{mouse}:0.395092306997;PAX6:0.345637634907;GFI1B:0.34464498359;NKX3-2:0.299590066403;NFE2L2:0.289722550881;ZNF384:0.287017896764;FOX{D1,D2}:0.281410636771;TGIF1:0.273199201754;HNF4A_NR2F1,2:0.262057860927;PAX4:0.175601132696;SOX17:0.160499896184;CEBPA,B_DDIT3:0.141584728319;ADNP_IRX_SIX_ZHX:0.117353186756;ZBTB6:0.112263607582;SREBF1,2:0.112058003734;FOXP3:0.0874311121791;AHR_ARNT_ARNT2:0.0812255489559;FOX{I1,J2}:0.0595079028519;HNF1A:0.0577348095703;REST:0.0363709491324;FOXD3:0.0134816184369;PRDM1:-0.000475677042322;NR1H4:-0.000893450415027;ELK1,4_GABP{A,B1}:-0.00451312622879;HOXA9_MEIS1:-0.0381355748044;AIRE:-0.0510872513604;IRF1,2:-0.0549779545047;POU3F1..4:-0.0900009051298;ZNF143:-0.0947063426106;MED-1{core}:-0.0949992419781;TLX2:-0.134539849108;ATF2:-0.138497814517;MYB:-0.153221964729;NFIL3:-0.154857899347;NRF1:-0.170306673084;XCPE1{core}:-0.174751233601;EGR1..3:-0.198584052603;RREB1:-0.201550417926;YY1:-0.208548809587;BACH2:-0.214462423758;SOX2:-0.221559683784;EP300:-0.227895956695;SP1:-0.232533944941;STAT5{A,B}:-0.234818940363;JUN:-0.243742408251;ZIC1..3:-0.251108125233;PPARG:-0.262767560736;NKX6-1,2:-0.298540735738;FOSL2:-0.30189749117;T:-0.337415846671;PAX2:-0.379965806674;PAX3,7:-0.381636730966;DMAP1_NCOR{1,2}_SMARC:-0.390138517424;NFE2:-0.393456095863;ATF5_CREB3:-0.39596387617;FOS_FOS{B,L1}_JUN{B,D}:-0.398416584803;GFI1:-0.411786597097;CRX:-0.414534778383;ZFP161:-0.423333036843;PRRX1,2:-0.434250338461;ETS1,2:-0.45776758402;TOPORS:-0.462809744005;ATF4:-0.47307711397;ZBTB16:-0.483658336385;RFX1:-0.495131544244;ELF1,2,4:-0.505359299824;FOXM1:-0.532998513745;IKZF2:-0.550719555214;BREu{core}:-0.567608082127;FOXN1:-0.570333806493;IRF7:-0.573876644269;RUNX1..3:-0.579811979812;NFKB1_REL_RELA:-0.599385710722;TFDP1:-0.599470465525;BPTF:-0.608832576942;SPI1:-0.620241762801;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.633329516314;CREB1:-0.656883853213;RBPJ:-0.659002808292;SPIB:-0.705293092049;POU5F1:-0.713565197464;NR5A1,2:-0.731685108353;ONECUT1,2:-0.750315890913;GATA6:-0.76651980286;RFX2..5_RFXANK_RFXAP:-0.784964915264;NKX2-3_NKX2-5:-0.78605426468;RORA:-0.795083675413;NANOG:-0.811594033205;FOXP1:-0.829598301067;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.866580441821;NFY{A,B,C}:-0.880237959338;VSX1,2:-0.88085400778;PAX8:-0.910544152673;LMO2:-0.936265690199;OCT4_SOX2{dimer}:-0.974042873141;FOX{F1,F2,J1}:-0.980809229382;LEF1_TCF7_TCF7L1,2:-0.985646753826;SNAI1..3:-0.999176341906;CUX2:-1.00259672917;POU1F1:-1.05357405281;PITX1..3:-1.07525139958;ZEB1:-1.10259353233;E2F1..5:-1.17217268802;CDX1,2,4:-1.23871676119;PDX1:-1.27876702773;SOX{8,9,10}:-1.28761172313;PBX1:-1.38924763916;FOXQ1:-1.42088620778;MYOD1:-1.49606461583;ALX1:-1.98251304133;POU2F1..3:-2.0045810072 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11473-119C6;search_select_hide=table117:FF:11473-119C6 | |||
}} | }} |
Latest revision as of 18:03, 4 June 2020
Name: | Adipocyte - omental, donor1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11054 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11054
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11054
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.212 |
10 | 10 | 0.586 |
100 | 100 | 0.917 |
101 | 101 | 0.46 |
102 | 102 | 0.0154 |
103 | 103 | 0.977 |
104 | 104 | 0.873 |
105 | 105 | 0.111 |
106 | 106 | 0.671 |
107 | 107 | 0.552 |
108 | 108 | 0.491 |
109 | 109 | 0.25 |
11 | 11 | 0.258 |
110 | 110 | 0.451 |
111 | 111 | 0.581 |
112 | 112 | 0.824 |
113 | 113 | 0.0605 |
114 | 114 | 0.759 |
115 | 115 | 0.0604 |
116 | 116 | 0.349 |
117 | 117 | 0.135 |
118 | 118 | 0.054 |
119 | 119 | 0.0672 |
12 | 12 | 0.607 |
120 | 120 | 0.306 |
121 | 121 | 0.615 |
122 | 122 | 0.255 |
123 | 123 | 0.0083 |
124 | 124 | 0.587 |
125 | 125 | 0.157 |
126 | 126 | 0.53 |
127 | 127 | 0.0826 |
128 | 128 | 0.692 |
129 | 129 | 0.888 |
13 | 13 | 0.315 |
130 | 130 | 0.392 |
131 | 131 | 0.11 |
132 | 132 | 0.475 |
133 | 133 | 0.522 |
134 | 134 | 0.303 |
135 | 135 | 0.575 |
136 | 136 | 0.449 |
137 | 137 | 0.742 |
138 | 138 | 0.167 |
139 | 139 | 0.811 |
14 | 14 | 0.246 |
140 | 140 | 0.17 |
141 | 141 | 0.466 |
142 | 142 | 0.382 |
143 | 143 | 0.278 |
144 | 144 | 0.936 |
145 | 145 | 0.19 |
146 | 146 | 0.998 |
147 | 147 | 0.255 |
148 | 148 | 0.93 |
149 | 149 | 6.02375e-4 |
15 | 15 | 0.551 |
150 | 150 | 0.766 |
151 | 151 | 0.778 |
152 | 152 | 0.0677 |
153 | 153 | 0.127 |
154 | 154 | 0.593 |
155 | 155 | 0.017 |
156 | 156 | 0.186 |
157 | 157 | 0.698 |
158 | 158 | 0.00148 |
159 | 159 | 0.493 |
16 | 16 | 0.0468 |
160 | 160 | 0.775 |
161 | 161 | 0.122 |
162 | 162 | 0.513 |
163 | 163 | 0.0486 |
164 | 164 | 0.754 |
165 | 165 | 0.704 |
166 | 166 | 0.0847 |
167 | 167 | 0.274 |
168 | 168 | 0.864 |
169 | 169 | 0.0736 |
17 | 17 | 0.661 |
18 | 18 | 0.767 |
19 | 19 | 0.0233 |
2 | 2 | 0.161 |
20 | 20 | 0.204 |
21 | 21 | 0.606 |
22 | 22 | 0.344 |
23 | 23 | 0.464 |
24 | 24 | 0.358 |
25 | 25 | 0.307 |
26 | 26 | 0.341 |
27 | 27 | 0.814 |
28 | 28 | 0.169 |
29 | 29 | 0.113 |
3 | 3 | 0.742 |
30 | 30 | 0.285 |
31 | 31 | 0.951 |
32 | 32 | 6.27981e-12 |
33 | 33 | 0.511 |
34 | 34 | 0.919 |
35 | 35 | 0.748 |
36 | 36 | 0.0782 |
37 | 37 | 0.627 |
38 | 38 | 0.272 |
39 | 39 | 0.108 |
4 | 4 | 0.39 |
40 | 40 | 0.0802 |
41 | 41 | 0.759 |
42 | 42 | 0.3 |
43 | 43 | 0.839 |
44 | 44 | 0.774 |
45 | 45 | 0.84 |
46 | 46 | 0.411 |
47 | 47 | 0.44 |
48 | 48 | 0.37 |
49 | 49 | 0.398 |
5 | 5 | 0.486 |
50 | 50 | 0.696 |
51 | 51 | 0.398 |
52 | 52 | 0.614 |
53 | 53 | 0.146 |
54 | 54 | 0.842 |
55 | 55 | 0.64 |
56 | 56 | 0.311 |
57 | 57 | 0.76 |
58 | 58 | 0.415 |
59 | 59 | 0.431 |
6 | 6 | 0.541 |
60 | 60 | 0.954 |
61 | 61 | 0.221 |
62 | 62 | 0.427 |
63 | 63 | 0.884 |
64 | 64 | 0.232 |
65 | 65 | 0.773 |
66 | 66 | 0.142 |
67 | 67 | 0.673 |
68 | 68 | 0.916 |
69 | 69 | 0.736 |
7 | 7 | 0.386 |
70 | 70 | 0.673 |
71 | 71 | 0.73 |
72 | 72 | 0.358 |
73 | 73 | 0.139 |
74 | 74 | 0.347 |
75 | 75 | 0.515 |
76 | 76 | 0.201 |
77 | 77 | 0.155 |
78 | 78 | 0.271 |
79 | 79 | 0.257 |
8 | 8 | 0.47 |
80 | 80 | 0.601 |
81 | 81 | 0.846 |
82 | 82 | 0.898 |
83 | 83 | 0.649 |
84 | 84 | 0.0987 |
85 | 85 | 0.0677 |
86 | 86 | 0.414 |
87 | 87 | 0.273 |
88 | 88 | 0.684 |
89 | 89 | 0.456 |
9 | 9 | 0.391 |
90 | 90 | 0.891 |
91 | 91 | 0.384 |
92 | 92 | 0.344 |
93 | 93 | 0.964 |
94 | 94 | 0.423 |
95 | 95 | 0.494 |
96 | 96 | 0.838 |
97 | 97 | 0.288 |
98 | 98 | 0.231 |
99 | 99 | 0.0689 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11054
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000039 human adipocyte of omentum tissue sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000255 (eukaryotic cell)
0000136 (fat cell)
0002615 (adipocyte of omentum tissue)
UBERON: Anatomy
0000468 (multi-cellular organism)
0003688 (omentum)
0002100 (trunk)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0004457 (cavity lining)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004923 (organ component layer)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002323 (body cavity)
0000042 (serous membrane)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0002417 (abdominal segment of trunk)
0002358 (peritoneum)
0000916 (abdomen)
0003684 (abdominal cavity)
0001178 (visceral peritoneum)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000039 (human adipocyte of omentum tissue sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)