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{{f5samples
{{f5samples
|id=FF:11474-119C7
|DRA_sample_Accession=CAGE@SAMD00004933
|name=Adipocyte - omental, donor2
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004933
|sample_id=11474
|accession_numbers=CAGE;DRX008098;DRR008970;DRZ000395;DRZ001780;DRZ011745;DRZ013130
|rna_tube_id=119C7
|accession_numbers_RNASeq=sRNA-Seq;DRX037234;DRR041600;DRZ007242
|rna_box=119
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0003688,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0004457,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004923,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002323,UBERON:0000042,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0002417,UBERON:0002358,UBERON:0000916,UBERON:0003684,UBERON:0001178
|rna_position=C7
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000325,CL:0000255,CL:0000136,CL:0002615
|sample_cell_lot=lot:OMM040705
|sample_cell_catalog=
|sample_company=
|rna_lot_number=
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=
|sample_donor(cell lot)=
|sample_sex=
|sample_age=
|sample_ethnicity=
|rna_rin=
|rna_od260/230=1.89
|rna_od260/280=2.09
|sample_cell_type=
|sample_cell_line=
|sample_collaboration=
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.6
|rna_weight_ug=13.7
|rna_concentration=0.545
|sample_note=
|profile_hcage=CNhs12067,LSID838,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10014,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000063,CL:0000134,CL:0000136,CL:0000144,CL:0000219,CL:0000255,CL:0000325,CL:0000548,CL:0000723,CL:0002320,CL:0002371,CL:0002615
|ancestors_in_anatomy_facet=UBERON:0000042,UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000916,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001062,UBERON:0001178,UBERON:0002050,UBERON:0002100,UBERON:0002323,UBERON:0002358,UBERON:0002384,UBERON:0002417,UBERON:0002532,UBERON:0002553,UBERON:0003684,UBERON:0003688,UBERON:0004120,UBERON:0004457,UBERON:0004458,UBERON:0004923,UBERON:0005423
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000039
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.12!130.10!TCF21;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.96!90.07!HOXC5;;chr4:174451370..174451387,-!p1@HAND2!1.83!67.05!HAND2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.60!39.03!ZBED1;;chr2:119605214..119605230,-!p1@EN1!1.59!38.03!EN1;;chr4:174450089..174450153,-!p2@HAND2!1.57!36.03!HAND2;;chr12:54402745..54402788,+!p1@HOXC8!1.48!29.02!HOXC8;;chr9:132427883..132427951,+!p2@PRRX2!1.46!28.02!PRRX2;;chr19:47523058..47523114,+!p1@NPAS1!1.43!26.02!NPAS1;;chr9:132427972..132428056,+!p1@PRRX2!1.41!32.02!PRRX2;;chrX:106960180..106960197,-!p2@TSC22D3!1.39!87.06!TSC22D3;;chr7:19157248..19157268,-!p1@TWIST1!1.39!64.05!TWIST1;;chr4:4861385..4861398,+!p1@MSX1!1.36!64.05!MSX1;;chr9:96717629..96717644,-!p1@BARX1!1.34!21.02!BARX1;;chr10:28034739..28034756,-!p1@MKX!1.34!21.02!MKX;;chr1:170632285..170632309,+!p1@PRRX1!1.33!23.02!PRRX1;;chr17:46682321..46682362,-!p1@HOXB6!1.30!19.01!HOXB6;;chr2:239756739..239756755,+!p2@TWIST2!1.29!31.02!TWIST2;;chr1:170633348..170633399,+!p2@PRRX1!1.27!24.02!PRRX1;;chr5:158526917..158526932,-!p1@EBF1!1.25!41.03!EBF1;;chr1:23885981..23886002,-!p1@ID3!1.24!2769.03!ID3;;chr16:31076332..31076388,-!p3@ZNF668!1.18!14.01!ZNF668;;chr6:19837592..19837621,+!p1@ID4!1.16!81.06!ID4;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.15!13.01!HOXC5;;chrX:106960285..106960299,-!p1@TSC22D3!1.14!341.25!TSC22D3;;chr2:239756671..239756732,+!p1@TWIST2!1.13!40.03!TWIST2;;chr11:46299539..46299620,+!p2@CREB3L1!1.13!21.02!CREB3L1;;chr2:119605056..119605071,-!p10@EN1!1.11!12.01!EN1;;chr3:126076242..126076257,-!p1@KLF15!1.09!14.01!KLF15;;chr12:54394309..54394336,+!p2@HOXC9!1.08!11.01!HOXC9;;chr7:27192185..27192209,-!p1@HOXA3!1.08!11.01!HOXA3;;chr10:114889016..114889037,+!p15@TCF7L2!1.04!10.01!TCF7L2;;chr11:113930425..113930471,+!p1@ZBTB16!1.03!14.01!ZBTB16;;chr19:33793430..33793447,-!p1@CEBPA!1.02!41.03!CEBPA;;chr11:12696071..12696086,+!p3@TEAD1!1.00!12.01!TEAD1;;chr10:114889045..114889074,+!p12@TCF7L2!1.00!9.01!TCF7L2;;chr10:119302232..119302265,+!p1@EMX2!1.00!9.01!EMX2;;chr12:54402790..54402805,+!p2@HOXC8!1.00!9.01!HOXC8;;chr7:1577899..1577943,+!p3@MAFK!1.00!9.01!MAFK;;chr5:92918919..92918942,+!p1@NR2F1!0.98!39.03!NR2F1;;chr5:72744594..72744609,-!p1@FOXD1!0.96!38.03!FOXD1;;chr7:150946015..150946070,-!p3@SMARCD3!0.96!18.01!SMARCD3;;chr10:114710244..114710257,+!p3@TCF7L2!0.95!22.02!TCF7L2;;chr1:170633262..170633285,+!p3@PRRX1!0.95!9.01!PRRX1;;chr10:119302508..119302559,+!p5@EMX2!0.95!8.01!EMX2;;chr5:2751762..2751784,-!p1@IRX2!0.95!8.01!IRX2;;chr6:1389989..1390019,+!p2@FOXF2!0.95!8.01!FOXF2;;chrX:106960249..106960260,-!p5@TSC22D3!0.93!12.01!TSC22D3;;chr1:170632959..170632987,+!p4@PRRX1!0.92!8.01!PRRX1;;chr8:49833948..49833973,-!p2@SNAI2!0.91!47.03!SNAI2;;chr9:77112244..77112262,+!p1@RORB!0.91!8.01!RORB;;chr6:144329384..144329405,-!p1@PLAGL1!0.90!85.06!PLAGL1;;chr7:19157043..19157088,-!p2@TWIST1!0.90!18.01!TWIST1;;chr15:57511609..57511651,+!p2@TCF12!0.90!12.01!TCF12;;chr14:62213758..62213774,+!p8@HIF1A!0.90!9.01!HIF1A;;chr12:54378923..54378966,+!p1@HOXC10!0.90!7.01!HOXC10;;chr12:54393880..54393962,+!p1@HOXC9!0.90!7.01!HOXC9;;chr12:54394416..54394467,+!p5@HOXC9!0.90!7.01!HOXC9;;chr19:46801639..46801699,+!p1@HIF3A!0.90!7.01!HIF3A;;chr16:1429010..1429038,-!p5@UNKL!0.90!7.01!UNKL;;chr4:174451350..174451363,-!p3@HAND2!0.90!7.01!HAND2;;chr11:113930291..113930339,+!p2@ZBTB16!0.88!11.01!ZBTB16;;chr20:30193083..30193098,+!p1@ID1!0.87!548.40!ID1;;chr11:47279504..47279563,+!p1@NR1H3!0.87!15.01!NR1H3;;chr15:42749722..42749739,-!p2@ZFP106!0.87!12.01!ZFP106;;chr17:46687959..46688007,-!p2@HOXB7!0.87!9.01!HOXB7;;chr14:75894714..75894733,+!p1@JDP2!0.86!186.14!JDP2;;chr13:41240717..41240735,-!p2@FOXO1!0.86!45.03!FOXO1;;chr8:99956662..99956684,+!p1@OSR2!0.86!10.01!OSR2;;chr16:31454084..31454115,-!p1@ZNF843!0.86!7.01!ZNF843;;chr17:1959369..1959388,+!p2@HIC1!0.85!17.01!HIC1;;chr12:80085061..80085119,-!p6@PAWR!0.85!10.01!PAWR;;chr16:54964740..54964789,+!p1@IRX5!0.85!9.01!IRX5;;chr17:46688334..46688385,-!p1@HOXB7!0.85!9.01!HOXB7;;chr14:95236440..95236465,-!p1@GSC!0.85!6.00!GSC;;chr10:119303078..119303169,+!p2@EMX2!0.85!6.00!EMX2;;chr10:28035133..28035148,-!p3@MKX!0.85!6.00!MKX;;chr11:113930401..113930422,+!p3@ZBTB16!0.85!6.00!ZBTB16;;chr12:54380404..54380433,+!p3@HOXC10!0.85!6.00!HOXC10;;chr12:54402729..54402743,+!p3@HOXC8!0.85!6.00!HOXC8;;chr2:175199697..175199706,+!p2@SP9!0.85!6.00!SP9;;chr2:85981107..85981120,+!p3@ATOH8!0.85!6.00!ATOH8;;chr3:141719209..141719215,-!p10@TFDP2!0.85!6.00!TFDP2;;chr8:93074803..93074845,-!p1@RUNX1T1!0.85!6.00!RUNX1T1;;chr1:170633194..170633205,+!p18@PRRX1!0.85!6.00!PRRX1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.84!451.33!TAX1BP3;;chr19:13134772..13134822,+!p2@NFIX!0.84!9.01!NFIX;;chr2:46612334..46612349,+!p6@EPAS1!0.84!8.01!EPAS1;;chr5:92919100..92919135,+!p3@NR2F1!0.82!7.01!NR2F1;;chr14:61116183..61116208,-!p1@SIX1!0.81!22.02!SIX1;;chr10:77161133..77161176,-!p3@ZNF503!0.80!12.01!ZNF503;;chr6:85474299..85474324,-!p1@TBX18!0.80!10.01!TBX18;;chr2:85980951..85981004,+!p1@ATOH8!0.80!9.01!ATOH8;;chr13:41240737..41240787,-!p1@FOXO1!0.79!67.05!FOXO1;;chr17:46675420..46675465,-!p3@HOXB6!0.79!6.00!HOXB6;;chr18:19749541..19749557,+!p1@GATA6!0.78!17.01!GATA6;;chrX:106960221..106960236,-!p3@TSC22D3!0.78!15.01!TSC22D3;;chr3:24536253..24536328,-!p1@THRB!0.78!10.01!THRB;;chr2:119604456..119604501,-!p2@EN1!0.78!5.00!EN1;;chr2:119605253..119605264,-!p5@EN1!0.78!5.00!EN1;;chr2:46612891..46612907,+!p10@EPAS1!0.78!5.00!EPAS1;;chr2:85981008..85981025,+!p7@ATOH8!0.78!5.00!ATOH8;;chr3:25470156..25470227,+!p2@RARB!0.78!5.00!RARB;;chr1:170632683..170632696,+!p12@PRRX1!0.78!5.00!PRRX1;;chr10:119302645..119302712,+!p3@EMX2!0.78!5.00!EMX2;;chr12:54410948..54410992,+!p3@HOXC5!0.78!5.00!HOXC5;;chr2:46602879..46602899,+!p8@EPAS1!0.77!6.00!EPAS1;;chr14:62213827..62213853,+!p6@HIF1A!0.76!7.01!HIF1A;;chr16:86544113..86544145,+!p1@FOXF1!0.76!6.00!FOXF1;;chr2:8822176..8822196,+!p1@ID2!0.73!698.51!ID2;;chr17:38498594..38498661,+!p2@RARA!0.73!16.01!RARA;;chr14:24837368..24837401,+!p1@NFATC4!0.73!11.01!NFATC4;;chr2:208031943..208031978,-!p5@KLF7!0.73!6.00!KLF7;;chr4:81118647..81118666,+!p1@PRDM8!0.73!6.00!PRDM8;;chr2:46524537..46524553,+!p1@EPAS1!0.72!471.35!EPAS1;;chr8:106330656..106330684,+!p1@ZFPM2!0.72!12.01!ZFPM2;;chr19:50432453..50432468,+!p1@ATF5!0.71!261.19!ATF5;;chr7:44143925..44143970,+!p1@AEBP1!0.71!105.08!AEBP1;;chr11:46299199..46299233,+!p1@CREB3L1!0.71!24.02!CREB3L1;;chr10:131762504..131762555,-!p1@EBF3!0.70!4.00!EBF3;;chr11:12696102..12696113,+!p5@TEAD1!0.70!4.00!TEAD1;;chr11:46333934..46333963,+!p5@CREB3L1!0.70!4.00!CREB3L1;;chr12:54422217..54422239,+!p3@HOXC6!0.70!4.00!HOXC6;;chr12:54447637..54447659,+!p4@HOXC4!0.70!4.00!HOXC4;;chr13:37494248..37494260,-!p3@SMAD9!0.70!4.00!SMAD9;;chr5:139492456..139492489,+!p7@PURA!0.70!4.00!PURA;;chr5:92919452..92919496,+!p11@NR2F1!0.70!4.00!NR2F1;;chr7:150945865..150945896,-!p4@SMARCD3!0.70!4.00!SMARCD3;;chr7:27205136..27205164,-!p1@HOXA9!0.70!4.00!HOXA9;;chr7:27213893..27213954,-!p1@HOXA10!0.70!4.00!HOXA10;;chr17:46659728..46659749,-!p3@HOXB3!0.70!4.00!HOXB3;;chr9:96717678..96717689,-!p2@BARX1!0.70!4.00!BARX1;;chr1:170633245..170633256,+!p14@PRRX1!0.70!4.00!PRRX1;;chr2:113994526..113994556,-!p3@PAX8!0.70!4.00!PAX8;;chr2:176994408..176994492,+!p1@HOXD8!0.70!4.00!HOXD8;;chr2:223163706..223163730,-!p1@PAX3!0.70!4.00!PAX3;;chr2:66662281..66662308,+!p1@MEIS1!0.69!15.01!MEIS1;;chr8:49833978..49833996,-!p1@SNAI2!0.68!89.07!SNAI2;;chr10:77161504..77161530,-!p1@ZNF503!0.68!58.04!ZNF503;;chr15:96873984..96873999,+!p3@NR2F2!0.68!32.02!NR2F2;;chr2:28618532..28618610,+!p4@FOSL2!0.68!7.01!FOSL2;;chr8:106330696..106330719,+!p2@ZFPM2!0.68!5.00!ZFPM2;;chr2:85980919..85980942,+!p4@ATOH8!0.67!4.00!ATOH8;;chr9:35732647..35732678,+!p2@CREB3!0.66!23.02!CREB3;;chr2:27357446..27357475,-!p2@PREB!0.66!14.01!PREB;;chr2:19558373..19558392,-!p1@OSR1!0.66!11.01!OSR1;;chr5:158526459..158526481,-!p2@EBF1!0.66!5.00!EBF1;;chr5:92918956..92918969,+!p4@NR2F1!0.66!4.00!NR2F1;;chr12:48298765..48298783,-!p2@VDR!0.65!8.01!VDR;;chr1:23696348..23696363,-!p4@ZNF436!0.65!4.00!ZNF436;;chr3:178789522..178789564,-!p2@ZMAT3!0.64!29.02!ZMAT3;;chr5:139487608..139487663,+!p3@PURA!0.64!8.01!PURA;;chr2:85981222..85981259,+!p2@ATOH8!0.64!6.00!ATOH8;;chr3:126076264..126076305,-!p2@KLF15!0.64!5.00!KLF15;;chr9:35732514..35732530,+!p5@CREB3!0.64!5.00!CREB3;;chr20:48807587..48807603,+!p16@CEBPB!0.64!4.00!CEBPB;;chr13:45151259..45151326,-!p2@TSC22D1!0.63!23.02!TSC22D1;;chr10:8096772..8096787,+!p2@GATA3!0.63!4.00!GATA3;;chr5:72743793..72743855,-!p4@FOXD1!0.63!4.00!FOXD1;;chr14:62162258..62162269,+!p2@HIF1A!0.62!36.03!HIF1A;;chr5:92918894..92918912,+!p2@NR2F1!0.62!12.01!NR2F1;;chr13:37494365..37494381,-!p1@SMAD9!0.62!6.00!SMAD9;;chr6:85473156..85473210,-!p2@TBX18!0.62!4.00!TBX18;;chr6:144289132..144289134,-!p3@PLAGL1!0.61!8.01!PLAGL1;;chr1:164528911..164528940,+!p7@PBX1!0.61!5.00!PBX1;;chr15:66994663..66994680,+!p1@SMAD6!0.60!8.01!SMAD6;;chr7:44143978..44143989,+!p2@AEBP1!0.60!6.00!AEBP1;;chr8:72756667..72756736,-!p2@MSC!0.60!5.00!MSC;;chr1:23694556..23694584,-!p6@ZNF436!0.60!4.00!ZNF436;;chr19:47910182..47910187,-!p3@MEIS3!0.60!3.00!MEIS3;;chr1:170632439..170632465,+!p11@PRRX1!0.60!3.00!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.60!3.00!PRRX1;;chr1:23886329..23886336,-!p3@ID3!0.60!3.00!ID3;;chr21:40033695..40033712,-!p6@ERG!0.60!3.00!ERG;;chr5:158527104..158527135,-!p4@EBF1!0.60!3.00!EBF1;;chr6:108977520..108977534,+!p7@FOXO3!0.60!3.00!FOXO3;;chr7:27196267..27196311,-!p1@HOXA7!0.60!3.00!HOXA7;;chr7:27205106..27205134,-!p2@HOXA9!0.60!3.00!HOXA9;;chr7:73038839..73038862,-!p1@MLXIPL!0.60!3.00!MLXIPL;;chr7:96654133..96654150,-!p1@DLX5!0.60!3.00!DLX5;;chr8:23564065..23564087,-!p1@NKX2-6!0.60!3.00!NKX2-6;;chr10:119301928..119301955,+!p7@EMX2!0.60!3.00!EMX2;;chr10:28032421..28032494,-!p2@MKX!0.60!3.00!MKX;;chr10:28035112..28035130,-!p5@MKX!0.60!3.00!MKX;;chr10:28035155..28035166,-!p8@MKX!0.60!3.00!MKX;;chr10:31610110..31610159,+!p2@ZEB1!0.60!3.00!ZEB1;;chr10:63853479..63853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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000136;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002615;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001013;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001178;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002323
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 43:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520omental%252c%2520donor2.CNhs12067.11474-119C7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520omental%252c%2520donor2.CNhs12067.11474-119C7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520omental%252c%2520donor2.CNhs12067.11474-119C7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520omental%252c%2520donor2.CNhs12067.11474-119C7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520omental%252c%2520donor2.CNhs12067.11474-119C7.hg38.nobarcode.ctss.bed.gz
|id=FF:11474-119C7
|is_a=EFO:0002091;;FF:0000039
|is_obsolete=
|library_id=CNhs12067
|library_id_phase_based=2:CNhs12067
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11474
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.GGCTAC.11474
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11474
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.GGCTAC.11474
|name=Adipocyte - omental, donor2
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs12067,LSID838,release011,COMPLETED
|profile_rnaseq=
|profile_srnaseq=SRhi10014,,,
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|rna_box=119
|rna_catalog_number=
|rna_concentration=0.545
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.6
|rna_lot_number=
|rna_od260/230=1.89
|rna_od260/280=2.09
|rna_position=C7
|rna_rin=
|rna_sample_type=
|rna_tube_id=119C7
|rna_weight_ug=13.7
|rnaseq_library_id=SRhi10014.GGCTAC
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_lot=lot:OMM040705
|sample_cell_type=
|sample_collaboration=
|sample_company=
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.33889772839899e-247!GO:0005737;cytoplasm;3.46174301925828e-187!GO:0044444;cytoplasmic part;4.09592901155504e-156!GO:0043231;intracellular membrane-bound organelle;8.00635402342376e-126!GO:0043227;membrane-bound organelle;1.46095949310828e-125!GO:0043226;organelle;6.1292920208361e-125!GO:0043229;intracellular organelle;1.12173924056297e-124!GO:0044422;organelle part;3.46301671908891e-105!GO:0044446;intracellular organelle part;5.46356045287214e-104!GO:0032991;macromolecular complex;5.60416427075778e-71!GO:0005515;protein binding;9.1726177892445e-71!GO:0005739;mitochondrion;1.0167279095877e-70!GO:0030529;ribonucleoprotein complex;2.36370948495472e-64!GO:0031090;organelle membrane;5.38539720618876e-57!GO:0044237;cellular metabolic process;9.47949833513403e-56!GO:0044238;primary metabolic process;1.54235121958451e-53!GO:0043233;organelle lumen;2.99323636288842e-52!GO:0031974;membrane-enclosed lumen;2.99323636288842e-52!GO:0044429;mitochondrial part;8.50167638349994e-49!GO:0009058;biosynthetic process;4.54005624344789e-44!GO:0005840;ribosome;2.00431021471805e-43!GO:0043170;macromolecule metabolic process;1.3503220295926e-42!GO:0019538;protein metabolic process;1.26445960508511e-41!GO:0003723;RNA binding;3.77870004664316e-41!GO:0005829;cytosol;1.14074445579927e-40!GO:0006412;translation;1.18289521778817e-39!GO:0044249;cellular biosynthetic process;2.41782827812377e-39!GO:0031967;organelle envelope;3.90296169459071e-39!GO:0003735;structural constituent of ribosome;4.15848179264614e-39!GO:0044428;nuclear part;8.43814404597172e-39!GO:0031975;envelope;8.43814404597172e-39!GO:0015031;protein transport;4.55809024795529e-38!GO:0044260;cellular macromolecule metabolic process;1.49305487203944e-37!GO:0033036;macromolecule localization;1.94391912651988e-36!GO:0009059;macromolecule biosynthetic process;3.72136840249332e-36!GO:0044267;cellular protein metabolic process;5.75688342355741e-36!GO:0045184;establishment of protein localization;1.4206494215779e-35!GO:0043234;protein complex;1.55538808698255e-35!GO:0033279;ribosomal subunit;1.6820616853478e-35!GO:0016043;cellular component organization and biogenesis;3.58468723432834e-35!GO:0008104;protein localization;8.15750731209387e-35!GO:0005740;mitochondrial envelope;1.65694681691905e-33!GO:0031966;mitochondrial membrane;5.93277258201325e-32!GO:0019866;organelle inner membrane;1.2353457818522e-29!GO:0005743;mitochondrial inner membrane;4.8940288365335e-29!GO:0005783;endoplasmic reticulum;2.49784499234016e-28!GO:0006396;RNA processing;6.8205397152807e-28!GO:0046907;intracellular transport;6.83711466997671e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.52546975579515e-25!GO:0006886;intracellular protein transport;2.30118565403441e-24!GO:0031981;nuclear lumen;4.39627736944692e-24!GO:0006119;oxidative phosphorylation;1.48201973025685e-23!GO:0016071;mRNA metabolic process;6.75938961501464e-23!GO:0005634;nucleus;2.15286219472626e-22!GO:0008380;RNA splicing;2.15934403758718e-22!GO:0012505;endomembrane system;8.07329160241995e-22!GO:0044432;endoplasmic reticulum part;1.22831405530142e-21!GO:0044455;mitochondrial membrane part;1.65903826465923e-21!GO:0065003;macromolecular complex assembly;2.12575392293343e-21!GO:0006397;mRNA processing;5.37256650418812e-20!GO:0022607;cellular component assembly;1.65972460944327e-19!GO:0044445;cytosolic part;2.7958399090127e-19!GO:0015934;large ribosomal subunit;2.85350984574517e-19!GO:0031980;mitochondrial lumen;5.21145145876011e-19!GO:0005759;mitochondrial matrix;5.21145145876011e-19!GO:0051186;cofactor metabolic process;5.49627170962097e-19!GO:0006457;protein folding;5.49627170962097e-19!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.68989920985665e-19!GO:0048770;pigment granule;1.20528740746696e-18!GO:0042470;melanosome;1.20528740746696e-18!GO:0005746;mitochondrial respiratory chain;4.57510509789441e-18!GO:0005794;Golgi apparatus;5.04527655258893e-18!GO:0015935;small ribosomal subunit;4.27290124459296e-17!GO:0051649;establishment of cellular localization;1.62999640374917e-16!GO:0051641;cellular localization;2.64478415086392e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.3235828431224e-16!GO:0005681;spliceosome;9.51041363444538e-16!GO:0050136;NADH dehydrogenase (quinone) activity;1.53859437571378e-15!GO:0003954;NADH dehydrogenase activity;1.53859437571378e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.53859437571378e-15!GO:0048193;Golgi vesicle transport;3.7217935194722e-15!GO:0006732;coenzyme metabolic process;3.80348836858063e-15!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.62419004889907e-15!GO:0005654;nucleoplasm;1.1054856827737e-14!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.27749431177297e-14!GO:0009055;electron carrier activity;1.27749431177297e-14!GO:0005789;endoplasmic reticulum membrane;1.33344968251565e-14!GO:0016817;hydrolase activity, acting on acid anhydrides;1.85476038321661e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.85529203113604e-14!GO:0016462;pyrophosphatase activity;1.95736926817256e-14!GO:0016491;oxidoreductase activity;1.98515404237811e-14!GO:0006996;organelle organization and biogenesis;2.21652696130881e-14!GO:0010467;gene expression;3.06957784668155e-14!GO:0000502;proteasome complex (sensu Eukaryota);4.0271824662048e-14!GO:0042775;organelle ATP synthesis coupled electron transport;6.66732448045618e-14!GO:0042773;ATP synthesis coupled electron transport;6.66732448045618e-14!GO:0051082;unfolded protein binding;7.06286688677039e-14!GO:0030964;NADH dehydrogenase complex (quinone);7.26811629496472e-14!GO:0045271;respiratory chain complex I;7.26811629496472e-14!GO:0005747;mitochondrial respiratory chain complex I;7.26811629496472e-14!GO:0017111;nucleoside-triphosphatase activity;8.80193925006328e-14!GO:0005761;mitochondrial ribosome;1.01173127903684e-13!GO:0000313;organellar ribosome;1.01173127903684e-13!GO:0043283;biopolymer metabolic process;1.51836052475085e-13!GO:0044248;cellular catabolic process;1.63840224805377e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.63840224805377e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.45117215066413e-13!GO:0022618;protein-RNA complex assembly;2.83190876208398e-13!GO:0043228;non-membrane-bound organelle;5.77721823003218e-13!GO:0043232;intracellular non-membrane-bound organelle;5.77721823003218e-13!GO:0044451;nucleoplasm part;1.09933533574232e-12!GO:0006605;protein targeting;1.63701312300192e-12!GO:0016192;vesicle-mediated transport;1.93015512682414e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;3.38829085384157e-12!GO:0044265;cellular macromolecule catabolic process;4.66770673448464e-12!GO:0006091;generation of precursor metabolites and energy;4.74743334750388e-12!GO:0012501;programmed cell death;5.41008211142285e-12!GO:0044257;cellular protein catabolic process;6.69570557751491e-12!GO:0019941;modification-dependent protein catabolic process;6.98517485825063e-12!GO:0043632;modification-dependent macromolecule catabolic process;6.98517485825063e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);8.17685691317012e-12!GO:0016874;ligase activity;9.55097079113939e-12!GO:0043285;biopolymer catabolic process;1.07313897114416e-11!GO:0006511;ubiquitin-dependent protein catabolic process;1.19914158530422e-11!GO:0006512;ubiquitin cycle;1.34268779661216e-11!GO:0008219;cell death;1.56445652910753e-11!GO:0016265;death;1.56445652910753e-11!GO:0006915;apoptosis;1.58930227153161e-11!GO:0008134;transcription factor binding;1.76965057883818e-11!GO:0008135;translation factor activity, nucleic acid binding;2.63803894781009e-11!GO:0009057;macromolecule catabolic process;3.58129944999483e-11!GO:0005793;ER-Golgi intermediate compartment;3.68335487219507e-11!GO:0000166;nucleotide binding;5.40642325055128e-11!GO:0030163;protein catabolic process;1.24633540376633e-10!GO:0005730;nucleolus;2.95898695760574e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.01544487080228e-10!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.17347615343641e-09!GO:0005788;endoplasmic reticulum lumen;1.22804288810248e-09!GO:0009259;ribonucleotide metabolic process;2.16295788315731e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.2505456778838e-09!GO:0009199;ribonucleoside triphosphate metabolic process;3.10153279796568e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;3.36647807700175e-09!GO:0000375;RNA splicing, via transesterification reactions;3.36647807700175e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.36647807700175e-09!GO:0009150;purine ribonucleotide metabolic process;4.07149162310821e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.62373860996204e-09!GO:0009144;purine nucleoside triphosphate metabolic process;4.62373860996204e-09!GO:0006163;purine nucleotide metabolic process;4.77043447368697e-09!GO:0009141;nucleoside triphosphate metabolic process;5.86543701835395e-09!GO:0048523;negative regulation of cellular process;6.07342410040401e-09!GO:0009060;aerobic respiration;6.44809959701896e-09!GO:0015986;ATP synthesis coupled proton transport;7.09807243118023e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.09807243118023e-09!GO:0045333;cellular respiration;7.23668992195048e-09!GO:0009142;nucleoside triphosphate biosynthetic process;8.59198019011356e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;8.59198019011356e-09!GO:0005768;endosome;9.28673882716912e-09!GO:0008565;protein transporter activity;1.11818463200068e-08!GO:0003743;translation initiation factor activity;1.14655554181497e-08!GO:0006413;translational initiation;1.23363775549241e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.29947755633068e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.29947755633068e-08!GO:0006446;regulation of translational initiation;1.30939336366397e-08!GO:0051188;cofactor biosynthetic process;1.36360421879705e-08!GO:0009056;catabolic process;1.36360421879705e-08!GO:0016049;cell growth;1.44695969065902e-08!GO:0008361;regulation of cell size;1.69985574772021e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.74499351587929e-08!GO:0044431;Golgi apparatus part;1.74499351587929e-08!GO:0006164;purine nucleotide biosynthetic process;2.14534651304992e-08!GO:0009260;ribonucleotide biosynthetic process;2.4823586085243e-08!GO:0006888;ER to Golgi vesicle-mediated transport;2.49845436413163e-08!GO:0046034;ATP metabolic process;3.07483332350934e-08!GO:0006461;protein complex assembly;3.31276958883598e-08!GO:0044262;cellular carbohydrate metabolic process;3.72700017437284e-08!GO:0051187;cofactor catabolic process;4.07003994648791e-08!GO:0016023;cytoplasmic membrane-bound vesicle;4.15463251111485e-08!GO:0017076;purine nucleotide binding;4.8776403668755e-08!GO:0015980;energy derivation by oxidation of organic compounds;4.99778064177735e-08!GO:0031988;membrane-bound vesicle;5.24531878467614e-08!GO:0015078;hydrogen ion transmembrane transporter activity;5.62697366560446e-08!GO:0019829;cation-transporting ATPase activity;5.8188430937847e-08!GO:0005773;vacuole;6.10591177802264e-08!GO:0043412;biopolymer modification;6.62935955391989e-08!GO:0006754;ATP biosynthetic process;6.84983983777624e-08!GO:0006753;nucleoside phosphate metabolic process;6.84983983777624e-08!GO:0048519;negative regulation of biological process;7.09525387551805e-08!GO:0009109;coenzyme catabolic process;7.74329029311682e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;7.83574253866457e-08!GO:0008654;phospholipid biosynthetic process;8.18306087418581e-08!GO:0030120;vesicle coat;1.31194179573832e-07!GO:0030662;coated vesicle membrane;1.31194179573832e-07!GO:0032553;ribonucleotide binding;1.44257015818615e-07!GO:0032555;purine ribonucleotide binding;1.44257015818615e-07!GO:0005635;nuclear envelope;1.94260881099504e-07!GO:0006099;tricarboxylic acid cycle;2.39549191226267e-07!GO:0046356;acetyl-CoA catabolic process;2.39549191226267e-07!GO:0006084;acetyl-CoA metabolic process;2.45194490084668e-07!GO:0001558;regulation of cell growth;2.55353251080151e-07!GO:0003712;transcription cofactor activity;2.75219639244648e-07!GO:0048475;coated membrane;2.91071407858731e-07!GO:0030117;membrane coat;2.91071407858731e-07!GO:0006464;protein modification process;3.19236337706989e-07!GO:0008639;small protein conjugating enzyme activity;3.93784070295603e-07!GO:0016469;proton-transporting two-sector ATPase complex;6.19217859642004e-07!GO:0004842;ubiquitin-protein ligase activity;6.5504644929509e-07!GO:0043067;regulation of programmed cell death;7.0730179263675e-07!GO:0009117;nucleotide metabolic process;7.482563480444e-07!GO:0019787;small conjugating protein ligase activity;7.70436279647846e-07!GO:0000323;lytic vacuole;7.97106425107611e-07!GO:0005764;lysosome;7.97106425107611e-07!GO:0031982;vesicle;8.08651396435951e-07!GO:0006752;group transfer coenzyme metabolic process;8.29589209205996e-07!GO:0031410;cytoplasmic vesicle;8.66108415152792e-07!GO:0009108;coenzyme biosynthetic process;8.90940598475116e-07!GO:0016887;ATPase activity;9.37197129783032e-07!GO:0006082;organic acid metabolic process;9.4136964263316e-07!GO:0031965;nuclear membrane;9.74613648591361e-07!GO:0042981;regulation of apoptosis;1.00528385249138e-06!GO:0019752;carboxylic acid metabolic process;1.0294713364718e-06!GO:0007005;mitochondrion organization and biogenesis;1.12430111806308e-06!GO:0042623;ATPase activity, coupled;1.18450792350355e-06!GO:0005798;Golgi-associated vesicle;1.24829230315159e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.3142323654993e-06!GO:0006259;DNA metabolic process;1.59048532820747e-06!GO:0003924;GTPase activity;1.85886890994402e-06!GO:0006913;nucleocytoplasmic transport;1.91862629138944e-06!GO:0008610;lipid biosynthetic process;2.1820874729274e-06!GO:0017038;protein import;2.32728001789444e-06!GO:0016604;nuclear body;2.33425767904527e-06!GO:0042254;ribosome biogenesis and assembly;2.6166210217781e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.64004408654077e-06!GO:0045259;proton-transporting ATP synthase complex;2.74527696385375e-06!GO:0051169;nuclear transport;2.76512078435603e-06!GO:0030532;small nuclear ribonucleoprotein complex;3.43026191946549e-06!GO:0051246;regulation of protein metabolic process;4.67389610159862e-06!GO:0044440;endosomal part;5.07430934288819e-06!GO:0010008;endosome membrane;5.07430934288819e-06!GO:0043069;negative regulation of programmed cell death;5.11975183374158e-06!GO:0030133;transport vesicle;5.47173922646935e-06!GO:0006399;tRNA metabolic process;5.51531531247631e-06!GO:0000139;Golgi membrane;5.9166174160436e-06!GO:0005839;proteasome core complex (sensu Eukaryota);6.53208426717282e-06!GO:0016853;isomerase activity;8.73951523129633e-06!GO:0003714;transcription corepressor activity;9.73144042764094e-06!GO:0040008;regulation of growth;1.0017783907343e-05!GO:0016881;acid-amino acid ligase activity;1.00628080316465e-05!GO:0051789;response to protein stimulus;1.0250876053092e-05!GO:0006986;response to unfolded protein;1.0250876053092e-05!GO:0043066;negative regulation of apoptosis;1.10312736125972e-05!GO:0031252;leading edge;1.24666809544237e-05!GO:0005770;late endosome;1.28991272150486e-05!GO:0005762;mitochondrial large ribosomal subunit;1.41455307452847e-05!GO:0000315;organellar large ribosomal subunit;1.41455307452847e-05!GO:0043687;post-translational protein modification;1.5313774481561e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.70861454127121e-05!GO:0004812;aminoacyl-tRNA ligase activity;1.70861454127121e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.70861454127121e-05!GO:0030554;adenyl nucleotide binding;1.85958393280773e-05!GO:0043038;amino acid activation;1.90177693501853e-05!GO:0006418;tRNA aminoacylation for protein translation;1.90177693501853e-05!GO:0043039;tRNA aminoacylation;1.90177693501853e-05!GO:0016607;nuclear speck;2.16427044094775e-05!GO:0016787;hydrolase activity;2.20265046821642e-05!GO:0045454;cell redox homeostasis;2.27103359776702e-05!GO:0044453;nuclear membrane part;2.30281688110874e-05!GO:0019867;outer membrane;2.30281688110874e-05!GO:0046474;glycerophospholipid biosynthetic process;2.34720126830475e-05!GO:0004298;threonine endopeptidase activity;2.81348740691193e-05!GO:0006916;anti-apoptosis;3.02635461363537e-05!GO:0006613;cotranslational protein targeting to membrane;3.12155918624609e-05!GO:0045786;negative regulation of progression through cell cycle;3.25034110948382e-05!GO:0005791;rough endoplasmic reticulum;3.49112172294017e-05!GO:0016564;transcription repressor activity;3.52082302585816e-05!GO:0032559;adenyl ribonucleotide binding;4.17636321428066e-05!GO:0044255;cellular lipid metabolic process;4.27838305362022e-05!GO:0006118;electron transport;4.45761001805129e-05!GO:0031968;organelle outer membrane;4.75503023010599e-05!GO:0005524;ATP binding;4.78896403666535e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.94843578936872e-05!GO:0005667;transcription factor complex;5.4320091529753e-05!GO:0016567;protein ubiquitination;5.58028345054755e-05!GO:0032446;protein modification by small protein conjugation;5.58028345054755e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;6.42005636533499e-05!GO:0015399;primary active transmembrane transporter activity;6.42005636533499e-05!GO:0065002;intracellular protein transport across a membrane;6.70970673209362e-05!GO:0007049;cell cycle;6.80458093376888e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;7.06795806636959e-05!GO:0051726;regulation of cell cycle;7.28184786426842e-05!GO:0000074;regulation of progression through cell cycle;7.49676070652446e-05!GO:0005525;GTP binding;8.3392468891272e-05!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;8.479791619011e-05!GO:0016859;cis-trans isomerase activity;8.7927540814122e-05!GO:0000245;spliceosome assembly;9.28702231605941e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;9.58470897044807e-05!GO:0000151;ubiquitin ligase complex;9.8530246843481e-05!GO:0030036;actin cytoskeleton organization and biogenesis;0.000114198757602882!GO:0005905;coated pit;0.000128143778645496!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000140687481487144!GO:0030867;rough endoplasmic reticulum membrane;0.000144743362808959!GO:0033116;ER-Golgi intermediate compartment membrane;0.000168420457841531!GO:0048468;cell development;0.00016861883204013!GO:0006974;response to DNA damage stimulus;0.000169067938259593!GO:0046467;membrane lipid biosynthetic process;0.000185234217095302!GO:0007050;cell cycle arrest;0.000185785623129788!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000190275039018003!GO:0006979;response to oxidative stress;0.00019256447913029!GO:0006366;transcription from RNA polymerase II promoter;0.000195598959500235!GO:0005741;mitochondrial outer membrane;0.000215071042122718!GO:0043284;biopolymer biosynthetic process;0.000215265722282417!GO:0008092;cytoskeletal protein binding;0.000231368500679891!GO:0000314;organellar small ribosomal subunit;0.000243438843656622!GO:0005763;mitochondrial small ribosomal subunit;0.000243438843656622!GO:0006612;protein targeting to membrane;0.000270442557512431!GO:0004576;oligosaccharyl transferase activity;0.000293151826421427!GO:0005048;signal sequence binding;0.000336329729012262!GO:0043021;ribonucleoprotein binding;0.000336871515342895!GO:0031324;negative regulation of cellular metabolic process;0.000367281951600587!GO:0032787;monocarboxylic acid metabolic process;0.00042916988810122!GO:0043492;ATPase activity, coupled to movement of substances;0.000431484510707994!GO:0032561;guanyl ribonucleotide binding;0.000431484510707994!GO:0019001;guanyl nucleotide binding;0.000431484510707994!GO:0046489;phosphoinositide biosynthetic process;0.000477722874481478!GO:0022890;inorganic cation transmembrane transporter activity;0.000481519660144127!GO:0043623;cellular protein complex assembly;0.000506906059277449!GO:0008026;ATP-dependent helicase activity;0.000508657628917785!GO:0008250;oligosaccharyl transferase complex;0.000530986509753588!GO:0006629;lipid metabolic process;0.000546120221308492!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00055772837324706!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000566479120085727!GO:0009165;nucleotide biosynthetic process;0.000578112355334607!GO:0009719;response to endogenous stimulus;0.000622340993334599!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000627799773318739!GO:0030308;negative regulation of cell growth;0.00064894787424322!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000685194034627937!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000699379930650002!GO:0005885;Arp2/3 protein complex;0.000703000762909972!GO:0045792;negative regulation of cell size;0.000724123649256052!GO:0006818;hydrogen transport;0.000735808222382286!GO:0016740;transferase activity;0.000735808222382286!GO:0005975;carbohydrate metabolic process;0.000744789019461531!GO:0006793;phosphorus metabolic process;0.00077568676192045!GO:0006796;phosphate metabolic process;0.00077568676192045!GO:0006650;glycerophospholipid metabolic process;0.000788908103578337!GO:0051170;nuclear import;0.000788908103578337!GO:0005643;nuclear pore;0.000797557880206591!GO:0019843;rRNA binding;0.000814266493603237!GO:0006364;rRNA processing;0.000820188206986364!GO:0050662;coenzyme binding;0.000820188206986364!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000836410350532492!GO:0030029;actin filament-based process;0.000836539344313165!GO:0051287;NAD binding;0.000850314922015144!GO:0015992;proton transport;0.000850314922015144!GO:0006066;alcohol metabolic process;0.000898128445487297!GO:0051920;peroxiredoxin activity;0.000905633327293935!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000921687349193049!GO:0003697;single-stranded DNA binding;0.000951994705006549!GO:0048522;positive regulation of cellular process;0.000954326105101545!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.00100281758611467!GO:0006606;protein import into nucleus;0.0010298447438023!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00104100066743173!GO:0043681;protein import into mitochondrion;0.00109365995030346!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00118019062256839!GO:0006635;fatty acid beta-oxidation;0.00125527296891144!GO:0006790;sulfur metabolic process;0.00126636508705431!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00130110390091008!GO:0015002;heme-copper terminal oxidase activity;0.00130110390091008!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00130110390091008!GO:0004129;cytochrome-c oxidase activity;0.00130110390091008!GO:0030663;COPI coated vesicle membrane;0.00136486384785128!GO:0030126;COPI vesicle coat;0.00136486384785128!GO:0009892;negative regulation of metabolic process;0.0013807226931283!GO:0016072;rRNA metabolic process;0.0013807226931283!GO:0016126;sterol biosynthetic process;0.00147976913259782!GO:0016310;phosphorylation;0.00149688350688252!GO:0046930;pore complex;0.00152948502261468!GO:0022402;cell cycle process;0.00159429892672426!GO:0006839;mitochondrial transport;0.00166064765366594!GO:0005769;early endosome;0.00174250192616808!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00174250192616808!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00174250192616808!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00174250192616808!GO:0003724;RNA helicase activity;0.00180670579130252!GO:0030137;COPI-coated vesicle;0.00186838270260206!GO:0016044;membrane organization and biogenesis;0.00187460161395403!GO:0018196;peptidyl-asparagine modification;0.00187908864918674!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00187908864918674!GO:0019318;hexose metabolic process;0.00199096382236549!GO:0048471;perinuclear region of cytoplasm;0.00203675408446539!GO:0000902;cell morphogenesis;0.00204372855930115!GO:0032989;cellular structure morphogenesis;0.00204372855930115!GO:0006414;translational elongation;0.00222324192027062!GO:0007243;protein kinase cascade;0.00227204960801059!GO:0030176;integral to endoplasmic reticulum membrane;0.00227204960801059!GO:0030658;transport vesicle membrane;0.00231808528493833!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00236121365808459!GO:0019899;enzyme binding;0.00239616462707873!GO:0045926;negative regulation of growth;0.00252382466685187!GO:0003899;DNA-directed RNA polymerase activity;0.00263617745489209!GO:0005996;monosaccharide metabolic process;0.0026900220500012!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00270573370963101!GO:0005774;vacuolar membrane;0.00278966845841733!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.00290294791151897!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.00312173050790159!GO:0030118;clathrin coat;0.00312173050790159!GO:0006281;DNA repair;0.00324695381942698!GO:0031902;late endosome membrane;0.00325176875261886!GO:0043566;structure-specific DNA binding;0.00335479488921353!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00360954557175512!GO:0004386;helicase activity;0.00366674464741847!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00367772238647631!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00367772238647631!GO:0051540;metal cluster binding;0.0037068452092213!GO:0051536;iron-sulfur cluster binding;0.0037068452092213!GO:0065004;protein-DNA complex assembly;0.00370996269470295!GO:0046483;heterocycle metabolic process;0.00371968728556898!GO:0016779;nucleotidyltransferase activity;0.00381830044137898!GO:0006891;intra-Golgi vesicle-mediated transport;0.00405498091069046!GO:0005869;dynactin complex;0.00407660461393749!GO:0030132;clathrin coat of coated pit;0.00415068186049016!GO:0006626;protein targeting to mitochondrion;0.00421620595259778!GO:0051427;hormone receptor binding;0.0042253148610907!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00422722152557676!GO:0006497;protein amino acid lipidation;0.00433431552430097!GO:0007040;lysosome organization and biogenesis;0.00434737679807835!GO:0044420;extracellular matrix part;0.00443731987453592!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0045455007857291!GO:0005520;insulin-like growth factor binding;0.00462738746277487!GO:0042158;lipoprotein biosynthetic process;0.00471115624969601!GO:0006631;fatty acid metabolic process;0.00475802381353128!GO:0006643;membrane lipid metabolic process;0.00475802381353128!GO:0048037;cofactor binding;0.00475802381353128!GO:0006506;GPI anchor biosynthetic process;0.00494421370459009!GO:0007006;mitochondrial membrane organization and biogenesis;0.00496293203301363!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00524817332527823!GO:0006892;post-Golgi vesicle-mediated transport;0.00528156221291161!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00532528154264774!GO:0048500;signal recognition particle;0.00532528154264774!GO:0006695;cholesterol biosynthetic process;0.00537738001997972!GO:0003713;transcription coactivator activity;0.00558168652849686!GO:0030027;lamellipodium;0.00603371930479589!GO:0030660;Golgi-associated vesicle membrane;0.00634545143222128!GO:0004177;aminopeptidase activity;0.00637337757348871!GO:0006644;phospholipid metabolic process;0.00651926425233323!GO:0030384;phosphoinositide metabolic process;0.00663400042546162!GO:0005583;fibrillar collagen;0.00665293458214215!GO:0001726;ruffle;0.00674965364862688!GO:0044437;vacuolar part;0.00678601863169108!GO:0000096;sulfur amino acid metabolic process;0.00681139310533815!GO:0005777;peroxisome;0.0070294199866608!GO:0042579;microbody;0.0070294199866608!GO:0006509;membrane protein ectodomain proteolysis;0.00709395794933612!GO:0033619;membrane protein proteolysis;0.00709395794933612!GO:0035257;nuclear hormone receptor binding;0.00716700320560002!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00770862548281327!GO:0045045;secretory pathway;0.0082072378372888!GO:0030134;ER to Golgi transport vesicle;0.00831262136145707!GO:0043488;regulation of mRNA stability;0.00871737601375053!GO:0043487;regulation of RNA stability;0.00871737601375053!GO:0006403;RNA localization;0.00882688103130342!GO:0044438;microbody part;0.00882688103130342!GO:0044439;peroxisomal part;0.00882688103130342!GO:0017166;vinculin binding;0.00885823345074222!GO:0006505;GPI anchor metabolic process;0.00886671616743625!GO:0007033;vacuole organization and biogenesis;0.00889241278468166!GO:0050657;nucleic acid transport;0.00889241278468166!GO:0051236;establishment of RNA localization;0.00889241278468166!GO:0050658;RNA transport;0.00889241278468166!GO:0035258;steroid hormone receptor binding;0.00889241278468166!GO:0030041;actin filament polymerization;0.00898595442683591!GO:0006006;glucose metabolic process;0.00898595442683591!GO:0016197;endosome transport;0.00916578710683093!GO:0016070;RNA metabolic process;0.00916885888400675!GO:0016860;intramolecular oxidoreductase activity;0.00926375897217495!GO:0030127;COPII vesicle coat;0.00937039887714386!GO:0012507;ER to Golgi transport vesicle membrane;0.00937039887714386!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00946160948623048!GO:0048487;beta-tubulin binding;0.00956081834938519!GO:0051329;interphase of mitotic cell cycle;0.00969603455337771!GO:0005765;lysosomal membrane;0.00983792904898574!GO:0003779;actin binding;0.00993335713487357!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00996896898545563!GO:0031072;heat shock protein binding;0.0101510669083269!GO:0005581;collagen;0.0101768456811279!GO:0050811;GABA receptor binding;0.0103358021909387!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0103607483208786!GO:0045047;protein targeting to ER;0.0103607483208786!GO:0051325;interphase;0.0107381939252725!GO:0051128;regulation of cellular component organization and biogenesis;0.0108742878553664!GO:0006778;porphyrin metabolic process;0.0109137924917891!GO:0033013;tetrapyrrole metabolic process;0.0109137924917891!GO:0006740;NADPH regeneration;0.0110331358210836!GO:0006098;pentose-phosphate shunt;0.0110331358210836!GO:0048518;positive regulation of biological process;0.0119631376118944!GO:0008652;amino acid biosynthetic process;0.0121746538508104!GO:0051252;regulation of RNA metabolic process;0.0122627515486584!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0122627515486584!GO:0030659;cytoplasmic vesicle membrane;0.0123555526484488!GO:0031903;microbody membrane;0.0125044280878692!GO:0005778;peroxisomal membrane;0.0125044280878692!GO:0008186;RNA-dependent ATPase activity;0.0129233230461892!GO:0016125;sterol metabolic process;0.0131062767421243!GO:0006383;transcription from RNA polymerase III promoter;0.0132726374515089!GO:0003746;translation elongation factor activity;0.0133130321424672!GO:0003676;nucleic acid binding;0.0139584379680422!GO:0007010;cytoskeleton organization and biogenesis;0.0141847972958651!GO:0051539;4 iron, 4 sulfur cluster binding;0.0144364522561904!GO:0065009;regulation of a molecular function;0.0149598168608943!GO:0033559;unsaturated fatty acid metabolic process;0.0149598168608943!GO:0006636;unsaturated fatty acid biosynthetic process;0.0149598168608943!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0150968114287794!GO:0016272;prefoldin complex;0.0153522178637878!GO:0043065;positive regulation of apoptosis;0.0154292703430064!GO:0035035;histone acetyltransferase binding;0.015517415330377!GO:0030145;manganese ion binding;0.015530885300936!GO:0008632;apoptotic program;0.015530885300936!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.015622836402991!GO:0042802;identical protein binding;0.0161338405043973!GO:0043068;positive regulation of programmed cell death;0.0163155322199704!GO:0005801;cis-Golgi network;0.0163155322199704!GO:0019395;fatty acid oxidation;0.0163994844352738!GO:0001527;microfibril;0.016981307065588!GO:0008312;7S RNA binding;0.0171733065242281!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.0173575044958886!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0176831455188154!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0177524881833361!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0177524881833361!GO:0050794;regulation of cellular process;0.01797179629981!GO:0030125;clathrin vesicle coat;0.0180267027985567!GO:0030665;clathrin coated vesicle membrane;0.0180267027985567!GO:0051087;chaperone binding;0.018101557566231!GO:0008139;nuclear localization sequence binding;0.0181126206146957!GO:0051168;nuclear export;0.0182107199270572!GO:0003729;mRNA binding;0.0185269676756371!GO:0030521;androgen receptor signaling pathway;0.0186320083364955!GO:0016481;negative regulation of transcription;0.0186853243626286!GO:0016563;transcription activator activity;0.0188348028667842!GO:0005684;U2-dependent spliceosome;0.0192280302148412!GO:0030880;RNA polymerase complex;0.0192981513899391!GO:0043433;negative regulation of transcription factor activity;0.0197738045176141!GO:0046519;sphingoid metabolic process;0.0199429320990089!GO:0007264;small GTPase mediated signal transduction;0.0202401665070635!GO:0045639;positive regulation of myeloid cell differentiation;0.0208960638441498!GO:0016051;carbohydrate biosynthetic process;0.0210545584345609!GO:0042168;heme metabolic process;0.0216044158342964!GO:0007034;vacuolar transport;0.0218369462734176!GO:0015631;tubulin binding;0.0224149524793525!GO:0000030;mannosyltransferase activity;0.0224758665210883!GO:0008180;signalosome;0.0227021779585325!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.023023941682208!GO:0007160;cell-matrix adhesion;0.0232174196940163!GO:0006325;establishment and/or maintenance of chromatin architecture;0.0243163462785875!GO:0031589;cell-substrate adhesion;0.0244804083223968!GO:0005586;collagen type III;0.0247043747583215!GO:0045936;negative regulation of phosphate metabolic process;0.0247043747583215!GO:0005862;muscle thin filament tropomyosin;0.0248542334142141!GO:0008154;actin polymerization and/or depolymerization;0.0254476026610976!GO:0030119;AP-type membrane coat adaptor complex;0.0262158261963518!GO:0008147;structural constituent of bone;0.0264978037810855!GO:0006749;glutathione metabolic process;0.0269969125290263!GO:0004004;ATP-dependent RNA helicase activity;0.0271308755623322!GO:0006595;polyamine metabolic process;0.0273518368934012!GO:0030140;trans-Golgi network transport vesicle;0.0278865931155509!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0278965220062139!GO:0006779;porphyrin biosynthetic process;0.0286036321147191!GO:0033014;tetrapyrrole biosynthetic process;0.0286036321147191!GO:0043022;ribosome binding;0.029010984560309!GO:0005813;centrosome;0.029010984560309!GO:0005595;collagen type XII;0.0291963998508171!GO:0006807;nitrogen compound metabolic process;0.0292350254861515!GO:0030518;steroid hormone receptor signaling pathway;0.0292915289594753!GO:0000278;mitotic cell cycle;0.0296060644978953!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0299490984062652!GO:0046394;carboxylic acid biosynthetic process;0.0299490984062652!GO:0016053;organic acid biosynthetic process;0.0299490984062652!GO:0006518;peptide metabolic process;0.0305639110352045!GO:0003756;protein disulfide isomerase activity;0.0307711948713195!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0307711948713195!GO:0032940;secretion by cell;0.0308446543870946!GO:0048144;fibroblast proliferation;0.0316957393947879!GO:0048145;regulation of fibroblast proliferation;0.0316957393947879!GO:0006352;transcription initiation;0.0318769952489943!GO:0009967;positive regulation of signal transduction;0.0319395711059559!GO:0001725;stress fiber;0.0325029838632527!GO:0032432;actin filament bundle;0.0325029838632527!GO:0006739;NADP metabolic process;0.0327240013968608!GO:0007021;tubulin folding;0.0328062403075793!GO:0003711;transcription elongation regulator activity;0.0345507983277844!GO:0006354;RNA elongation;0.0346268203684981!GO:0044433;cytoplasmic vesicle part;0.0347167262822555!GO:0031418;L-ascorbic acid binding;0.0348660048223166!GO:0031272;regulation of pseudopodium formation;0.0352739355240941!GO:0031269;pseudopodium formation;0.0352739355240941!GO:0031344;regulation of cell projection organization and biogenesis;0.0352739355240941!GO:0031268;pseudopodium organization and biogenesis;0.0352739355240941!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0352739355240941!GO:0031274;positive regulation of pseudopodium formation;0.0352739355240941!GO:0050681;androgen receptor binding;0.0352827399828557!GO:0008320;protein transmembrane transporter activity;0.0353195431843382!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0353326296968901!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0354036043906962!GO:0000428;DNA-directed RNA polymerase complex;0.0354036043906962!GO:0000049;tRNA binding;0.0357934624713238!GO:0006323;DNA packaging;0.0360493810329501!GO:0007041;lysosomal transport;0.0360866850711614!GO:0031529;ruffle organization and biogenesis;0.0361436290335664!GO:0005832;chaperonin-containing T-complex;0.0367458618063788!GO:0030503;regulation of cell redox homeostasis;0.036753397288237!GO:0005591;collagen type VIII;0.0369694673435672!GO:0005598;short-chain collagen;0.0369694673435672!GO:0005815;microtubule organizing center;0.0381261472711321!GO:0006007;glucose catabolic process;0.0386034976554858!GO:0006672;ceramide metabolic process;0.0388260448355695!GO:0006333;chromatin assembly or disassembly;0.0390725850617252!GO:0031406;carboxylic acid binding;0.0390725850617252!GO:0005100;Rho GTPase activator activity;0.04004138198468!GO:0006914;autophagy;0.040785823682785!GO:0001666;response to hypoxia;0.041110632343113!GO:0006950;response to stress;0.0422905577935684!GO:0030508;thiol-disulfide exchange intermediate activity;0.0427177465281347!GO:0030131;clathrin adaptor complex;0.0428635973495663!GO:0051028;mRNA transport;0.0433134314238981!GO:0006633;fatty acid biosynthetic process;0.0438895702588034!GO:0051101;regulation of DNA binding;0.0443886522873265!GO:0012506;vesicle membrane;0.0455928476154062!GO:0030911;TPR domain binding;0.0456725810349349!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0456826822243205!GO:0000082;G1/S transition of mitotic cell cycle;0.0460701445616971!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0462307687123715!GO:0006260;DNA replication;0.0464944468057577!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0468868772023609!GO:0006693;prostaglandin metabolic process;0.0472254367635656!GO:0006692;prostanoid metabolic process;0.0472254367635656!GO:0007030;Golgi organization and biogenesis;0.0472616188812793!GO:0019838;growth factor binding;0.0474609784347241!GO:0031901;early endosome membrane;0.0477129706212306!GO:0008286;insulin receptor signaling pathway;0.0478131282554213!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0481822679587129!GO:0010257;NADH dehydrogenase complex assembly;0.0481822679587129!GO:0033108;mitochondrial respiratory chain complex assembly;0.0481822679587129!GO:0016568;chromatin modification;0.0481822679587129!GO:0006897;endocytosis;0.0491435301453669!GO:0010324;membrane invagination;0.0491435301453669!GO:0030833;regulation of actin filament polymerization;0.0492010062991734!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0494162090244323!GO:0000209;protein polyubiquitination;0.049548822842921!GO:0048146;positive regulation of fibroblast proliferation;0.0499594356641368
|sample_id=11474
|sample_note=
|sample_sex=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=
|top_motifs=NKX2-2,8:3.2301192182;UFEwm:2.47125669882;NKX3-1:2.29281628889;ALX4:2.28453635403;PAX1,9:1.97971881369;FOXL1:1.92894858496;ESR1:1.92258024419;HES1:1.88005432967;EVI1:1.82649011701;HMX1:1.81243663521;IKZF1:1.79541941908;ZNF238:1.74057131838;NKX2-1,4:1.73377249797;XBP1:1.72565575697;GZF1:1.71006256547;GLI1..3:1.70149216543;TAL1_TCF{3,4,12}:1.63034818448;GCM1,2:1.60988320237;SRF:1.59488338875;ATF6:1.51671177817;RXRA_VDR{dimer}:1.43812249038;TFAP4:1.37323447113;HOX{A6,A7,B6,B7}:1.25829313772;TEAD1:1.24559077478;NKX3-2:1.24127813593;NR6A1:1.20721249354;EBF1:1.19095575064;RXR{A,B,G}:1.17318434566;AR:1.16003667088;TP53:1.15260411509;NFE2L1:1.11520742896;NANOG{mouse}:1.11472466016;HMGA1,2:1.08521174027;HOX{A4,D4}:1.08153780501;KLF4:1.06941837384;ZNF423:1.06677612198;NFATC1..3:1.03982125573;MYBL2:1.038786496;NR3C1:1.02907015766;TBP:1.01162954665;EN1,2:1.00002538708;NR1H4:0.987631212571;TEF:0.940204835647;HOX{A5,B5}:0.938913999958;GTF2A1,2:0.915859409223;TLX1..3_NFIC{dimer}:0.912049720221;SMAD1..7,9:0.899480903865;MTE{core}:0.88730779224;ARID5B:0.844653861116;TFCP2:0.835623592685;MAFB:0.81122102152;TFAP2{A,C}:0.755716067447;MAZ:0.664609866667;GTF2I:0.639945625284;GATA4:0.616923420354;MTF1:0.552918862852;FOXO1,3,4:0.532186373518;HIF1A:0.523517783724;DBP:0.502103973737;PAX5:0.498530128578;FOX{I1,J2}:0.486322146071;LHX3,4:0.464240375661;ZNF148:0.449477524255;SPZ1:0.427586763352;TBX4,5:0.427503828959;GFI1B:0.425623885501;TFAP2B:0.41661006538;HAND1,2:0.376182882538;ESRRA:0.307827690427;NHLH1,2:0.298293907237;FOXA2:0.281383657393;ZBTB6:0.26988909364;STAT2,4,6:0.264285708143;POU6F1:0.260486425854;MEF2{A,B,C,D}:0.245144835921;ZIC1..3:0.233942826141;HIC1:0.233658213267;ONECUT1,2:0.225231559049;PPARG:0.197414633576;HSF1,2:0.171726207583;REST:0.143001969404;PATZ1:0.13311268862;HLF:0.12656095738;MYB:0.115487897032;PAX6:0.100294700139;EP300:0.100252048896;SOX5:0.0975963053473;FOXP3:0.0958244718164;NFE2L2:0.0918525946255;XCPE1{core}:0.0877061599722;NFIL3:0.0853344185445;TGIF1:0.0554774993733;HOXA9_MEIS1:0.00725389232402;PRDM1:-0.0491488742379;SOX17:-0.057223269637;bHLH_family:-0.0596934489273;MYFfamily:-0.090957258266;HNF4A_NR2F1,2:-0.125075624382;NR5A1,2:-0.132912532512;MZF1:-0.14340898198;FOX{F1,F2,J1}:-0.211897398613;ALX1:-0.230349390971;CDC5L:-0.244316803536;PAX3,7:-0.244477338705;BACH2:-0.255266654529;FOX{D1,D2}:-0.282756508468;HNF1A:-0.285930514067;STAT1,3:-0.299172303821;PAX2:-0.303561395456;CEBPA,B_DDIT3:-0.342856393981;NFIX:-0.3454012752;AIRE:-0.387843315267;MED-1{core}:-0.394749018019;T:-0.397378308002;RREB1:-0.408529206209;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.410411926135;NFE2:-0.452661491743;DMAP1_NCOR{1,2}_SMARC:-0.472234123511;IKZF2:-0.473742413;OCT4_SOX2{dimer}:-0.47737610898;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.479494087258;FOSL2:-0.500807918145;GFI1:-0.532425406018;STAT5{A,B}:-0.537950083036;NFKB1_REL_RELA:-0.539616156417;FOS_FOS{B,L1}_JUN{B,D}:-0.541739464284;SOX2:-0.544720366592;SREBF1,2:-0.549471512314;NKX2-3_NKX2-5:-0.565297540317;SP1:-0.581200409906;LEF1_TCF7_TCF7L1,2:-0.590585314645;SPI1:-0.599277735609;SNAI1..3:-0.631521448214;ADNP_IRX_SIX_ZHX:-0.637878691491;IRF1,2:-0.642061033619;FOXM1:-0.645419682423;ZNF143:-0.672877227991;TOPORS:-0.682198414681;MYOD1:-0.705336205478;JUN:-0.709241591912;ZFP161:-0.736730265715;ETS1,2:-0.756521540827;ZNF384:-0.756994488135;POU3F1..4:-0.763697883662;EGR1..3:-0.769490489599;TLX2:-0.788417678021;RFX1:-0.796272715871;ATF5_CREB3:-0.796396088179;NRF1:-0.798951885794;RUNX1..3:-0.803186097634;CRX:-0.81378639411;ELF1,2,4:-0.845034437181;LMO2:-0.846038625692;ZEB1:-0.851005979146;RORA:-0.856526676164;PAX4:-0.861194335568;FOXD3:-0.873233772678;ELK1,4_GABP{A,B1}:-0.886715376402;YY1:-0.892077445757;SPIB:-0.898079390664;ATF4:-0.898106706384;RFX2..5_RFXANK_RFXAP:-0.905529990845;GATA6:-0.921489295961;PDX1:-0.923127597747;CDX1,2,4:-0.94208842791;ZBTB16:-0.951089225689;AHR_ARNT_ARNT2:-0.959517931002;ATF2:-0.967454178577;POU1F1:-1.01780390635;CREB1:-1.05452514246;HBP1_HMGB_SSRP1_UBTF:-1.09670078904;BREu{core}:-1.09774685626;IRF7:-1.10601158864;FOXP1:-1.13283211795;PRRX1,2:-1.1582490591;POU5F1:-1.19056766905;NFY{A,B,C}:-1.22482878253;TFDP1:-1.23689695617;CUX2:-1.31420955623;PBX1:-1.32391824839;SOX{8,9,10}:-1.34716075131;PITX1..3:-1.35197380026;NKX6-1,2:-1.39554522161;PAX8:-1.40696899989;NANOG:-1.43054407564;E2F1..5:-1.49051829055;FOXQ1:-1.52897617116;VSX1,2:-1.54170653305;BPTF:-1.61794530055;FOXN1:-1.69683672979;POU2F1..3:-1.81212513467;RBPJ:-2.26722752101
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11474-119C7;search_select_hide=table117:FF:11474-119C7
}}
}}

Latest revision as of 18:03, 4 June 2020

Name:Adipocyte - omental, donor2
Species:Human (Homo sapiens)
Library ID:CNhs12067
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueNA
dev stageNA
sexNA
ageNA
cell typeNA
cell lineNA
companyNA
collaborationNA
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.6

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004933
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12067 CAGE DRX008098 DRR008970
Accession ID Hg19

Library idBAMCTSS
CNhs12067 DRZ000395 DRZ001780
Accession ID Hg38

Library idBAMCTSS
CNhs12067 DRZ011745 DRZ013130
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004933
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10014.GGCTAC sRNA-Seq DRX037234 DRR041600
Accession ID Hg19

Library idBAMCTSS
SRhi10014.GGCTAC DRZ007242


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.131
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.363
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair1.279
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0.301
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.202
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.154
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.477
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.201
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0.301
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.484
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.301
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.301
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal1.146
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.571
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.477
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.903
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.059
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.545
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.441
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.301
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.301
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.929
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.602
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.477
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic1
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.955
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12067

Jaspar motifP-value
MA0002.20.858
MA0003.10.173
MA0004.10.583
MA0006.10.118
MA0007.10.101
MA0009.10.295
MA0014.10.819
MA0017.10.897
MA0018.22.23748e-5
MA0019.10.248
MA0024.15.42756e-6
MA0025.14.98666e-4
MA0027.10.386
MA0028.10.00366
MA0029.10.294
MA0030.10.186
MA0031.10.437
MA0035.20.218
MA0038.10.0623
MA0039.20.0954
MA0040.10.248
MA0041.10.461
MA0042.10.598
MA0043.12.46525e-5
MA0046.10.222
MA0047.20.72
MA0048.10.605
MA0050.18.19464e-6
MA0051.10.00225
MA0052.10.357
MA0055.10.953
MA0057.10.175
MA0058.10.395
MA0059.10.549
MA0060.18.95356e-7
MA0061.10.198
MA0062.21.25066e-8
MA0065.20.333
MA0066.10.0902
MA0067.10.0531
MA0068.10.519
MA0069.10.217
MA0070.10.879
MA0071.10.34
MA0072.10.831
MA0073.10.874
MA0074.10.746
MA0076.12.70482e-5
MA0077.10.445
MA0078.10.657
MA0079.20.853
MA0080.21.93221e-6
MA0081.10.00151
MA0083.10.00826
MA0084.10.96
MA0087.10.452
MA0088.10.623
MA0090.14.18393e-4
MA0091.10.0279
MA0092.10.00416
MA0093.10.435
MA0099.25.77853e-5
MA0100.10.352
MA0101.10.00273
MA0102.20.178
MA0103.10.112
MA0104.20.115
MA0105.10.98
MA0106.10.3
MA0107.10.00584
MA0108.20.0435
MA0111.10.928
MA0112.24.21003e-5
MA0113.10.0951
MA0114.10.65
MA0115.10.0155
MA0116.10.13
MA0117.10.188
MA0119.10.0925
MA0122.10.862
MA0124.10.04
MA0125.10.225
MA0131.10.0809
MA0135.10.197
MA0136.12.51438e-10
MA0137.20.432
MA0138.20.00661
MA0139.10.587
MA0140.10.675
MA0141.10.695
MA0142.10.586
MA0143.10.462
MA0144.10.519
MA0145.10.0762
MA0146.10.637
MA0147.10.247
MA0148.10.507
MA0149.10.889
MA0150.10.0819
MA0152.10.0414
MA0153.10.893
MA0154.10.111
MA0155.10.053
MA0156.11.1149e-9
MA0157.10.972
MA0159.10.107
MA0160.10.734
MA0162.10.0507
MA0163.10.0441
MA0164.10.788
MA0258.10.0215
MA0259.10.364



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12067

Novel motifP-value
10.563
100.825
1000.822
1010.328
1020.0778
1030.238
1040.798
1050.108
1060.049
1070.0892
1080.158
1090.373
110.356
1100.279
1110.258
1120.294
1130.713
1140.158
1150.00501
1160.148
1170.838
1180.684
1190.361
120.358
1200.514
1210.289
1220.333
1230.133
1240.841
1250.934
1260.717
1270.747
1280.179
1290.46
130.856
1300.972
1310.809
1320.136
1330.866
1340.701
1350.235
1360.744
1370.789
1380.69
1390.117
140.429
1400.872
1410.918
1420.736
1430.575
1440.881
1450.78
1460.759
1470.0676
1480.727
1492.51059e-4
150.708
1500.569
1510.745
1520.0312
1530.548
1540.991
1550.2
1560.973
1570.718
1580.137
1590.821
160.0218
1600.1
1610.75
1620.64
1630.872
1640.439
1650.98
1660.355
1670.314
1680.837
1690.0163
170.27
180.21
190.00735
20.311
200.387
210.356
220.126
230.0268
240.466
250.484
260.455
270.105
280.23
290.67
30.337
300.507
310.405
322.48961e-12
330.868
340.733
350.46
360.119
370.13
380.769
390.141
40.922
400.652
410.859
420.641
430.14
440.185
450.656
460.259
470.582
480.767
490.405
50.32
500.668
510.815
520.424
530.339
540.754
550.371
560.846
570.406
580.796
590.0407
60.566
600.384
610.363
620.612
630.158
640.7
650.0778
660.159
670.568
680.204
690.284
70.792
700.291
710.525
720.879
730.0272
740.215
750.442
760.449
770.0047
780.767
790.0203
80.159
800.769
810.361
820.0746
830.999
840.0689
850.00121
860.579
870.307
880.43
890.0138
90.32
900.67
910.634
920.0306
930.932
940.535
950.403
960.502
970.29
980.471
990.032



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12067


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000255 (eukaryotic cell)
0000136 (fat cell)
0002615 (adipocyte of omentum tissue)

UBERON: Anatomy
0000468 (multi-cellular organism)
0003688 (omentum)
0002100 (trunk)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0004457 (cavity lining)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004923 (organ component layer)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002323 (body cavity)
0000042 (serous membrane)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0002417 (abdominal segment of trunk)
0002358 (peritoneum)
0000916 (abdomen)
0003684 (abdominal cavity)
0001178 (visceral peritoneum)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000039 (human adipocyte of omentum tissue sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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