FF:11475-119C8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00004962 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004962 | ||
|accession_numbers=CAGE;DRX008099;DRR008971;DRZ000396;DRZ001781;DRZ011746;DRZ013131 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037006;DRR041372;DRZ007014 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0003688,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0004457,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004923,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002323,UBERON:0000042,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0002417,UBERON:0002358,UBERON:0000916,UBERON:0003684,UBERON:0001178 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000325,CL:0000255,CL:0000136,CL:0002615 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000039 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.40!248.51!TCF21;;chr4:174451370..174451387,-!p1@HAND2!1.68!46.48!HAND2;;chr19:33793430..33793447,-!p1@CEBPA!1.59!154.65!CEBPA;;chr11:47279504..47279563,+!p1@NR1H3!1.53!73.30!NR1H3;;chr19:46801639..46801699,+!p1@HIF3A!1.50!30.84!HIF3A;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.45!27.26!HOXC5;;chr5:158526917..158526932,-!p1@EBF1!1.39!58.10!EBF1;;chr3:126076242..126076257,-!p1@KLF15!1.38!28.61!KLF15;;chr17:46682321..46682362,-!p1@HOXB6!1.38!23.24!HOXB6;;chr5:92918919..92918942,+!p1@NR2F1!1.35!92.97!NR2F1;;chr9:96717629..96717644,-!p1@BARX1!1.33!20.56!BARX1;;chrX:106960180..106960197,-!p2@TSC22D3!1.31!71.96!TSC22D3;;chr2:46612334..46612349,+!p6@EPAS1!1.30!25.03!EPAS1;;chr15:42749722..42749739,-!p2@ZFP106!1.29!33.08!ZFP106;;chr8:99956662..99956684,+!p1@OSR2!1.28!27.71!OSR2;;chr5:92919100..92919135,+!p3@NR2F1!1.27!21.45!NR2F1;;chr1:23885981..23886002,-!p1@ID3!1.23!2730.04!ID3;;chr11:113930425..113930471,+!p1@ZBTB16!1.23!23.24!ZBTB16;;chr4:174450089..174450153,-!p2@HAND2!1.23!16.09!HAND2;;chr7:44143978..44143989,+!p2@AEBP1!1.22!28.16!AEBP1;;chr2:119605214..119605230,-!p1@EN1!1.22!15.64!EN1;;chrX:106960285..106960299,-!p1@TSC22D3!1.20!393.77!TSC22D3;;chr17:46675420..46675465,-!p3@HOXB6!1.20!16.98!HOXB6;;chr8:49833948..49833973,-!p2@SNAI2!1.18!88.05!SNAI2;;chr17:1959369..1959388,+!p2@HIC1!1.18!37.54!HIC1;;chr12:54402745..54402788,+!p1@HOXC8!1.18!14.30!HOXC8;;chr7:44143925..44143970,+!p1@AEBP1!1.17!305.27!AEBP1;;chr11:46299539..46299620,+!p2@CREB3L1!1.17!23.24!CREB3L1;;chr8:72756667..72756736,-!p2@MSC!1.17!21.45!MSC;;chr17:46675469..46675481,-!p4@HOXB6!1.16!13.41!HOXB6;;chr6:19837592..19837621,+!p1@ID4!1.15!80.01!ID4;;chr8:25902876..25902936,-!p1@EBF2!1.13!12.51!EBF2;;chr13:41240717..41240735,-!p2@FOXO1!1.12!83.13!FOXO1;;chr19:47523058..47523114,+!p1@NPAS1!1.12!12.07!NPAS1;;chr19:50432453..50432468,+!p1@ATF5!1.08!614.12!ATF5;;chr6:144329384..144329405,-!p1@PLAGL1!1.08!128.72!PLAGL1;;chr15:96873984..96873999,+!p3@NR2F2!1.07!79.11!NR2F2;;chr2:27357446..27357475,-!p2@PREB!1.07!37.54!PREB;;chr15:96869255..96869291,+!p6@NR2F2!1.05!18.77!NR2F2;;chr18:19749541..19749557,+!p1@GATA6!1.03!31.29!GATA6;;chr7:150946015..150946070,-!p3@SMARCD3!1.03!21.45!SMARCD3;;chr12:80085061..80085119,-!p6@PAWR!1.03!15.64!PAWR;;chrX:107019163..107019179,-!p7@TSC22D3!1.03!11.17!TSC22D3;;chr8:106330656..106330684,+!p1@ZFPM2!1.02!25.03!ZFPM2;;chr7:27192185..27192209,-!p1@HOXA3!1.02!9.39!HOXA3;;chr2:19558373..19558392,-!p1@OSR1!1.01!25.92!OSR1;;chr11:46299199..46299233,+!p1@CREB3L1!1.00!47.82!CREB3L1;;chr12:54394309..54394336,+!p2@HOXC9!1.00!8.94!HOXC9;;chr17:46690839..46690884,-!p1@HOXB8!1.00!8.94!HOXB8;;chr15:96874145..96874166,+!p7@NR2F2!0.98!16.54!NR2F2;;chr10:131762504..131762555,-!p1@EBF3!0.98!8.49!EBF3;;chr8:72756267..72756296,-!p4@MSC!0.97!12.51!MSC;;chr7:44143997..44144008,+!p3@AEBP1!0.97!10.73!AEBP1;;chr7:73038839..73038862,-!p1@MLXIPL!0.96!8.05!MLXIPL;;chrY:2803415..2803468,+!p1@ZFY!0.96!8.05!ZFY;;chr10:114710244..114710257,+!p3@TCF7L2!0.95!22.35!TCF7L2;;chr3:126076264..126076305,-!p2@KLF15!0.95!11.17!KLF15;;chr15:96874012..96874042,+!p2@NR2F2!0.94!71.96!NR2F2;;chr5:92918956..92918969,+!p4@NR2F1!0.94!8.49!NR2F1;;chr2:239756739..239756755,+!p2@TWIST2!0.93!12.96!TWIST2;;chr7:19157248..19157268,-!p1@TWIST1!0.92!21.01!TWIST1;;chr18:19749386..19749404,+!p2@GATA6!0.92!10.73!GATA6;;chr5:92919068..92919082,+!p5@NR2F1!0.91!8.49!NR2F1;;chrY:21906594..21906622,-!p1@KDM5D!0.91!7.15!KDM5D;;chr9:96717678..96717689,-!p2@BARX1!0.91!7.15!BARX1;;chr11:113930401..113930422,+!p3@ZBTB16!0.91!7.15!ZBTB16;;chr2:66662281..66662308,+!p1@MEIS1!0.90!25.03!MEIS1;;chr15:96874927..96874938,+!p8@NR2F2!0.90!15.20!NR2F2;;chr3:12330560..12330579,+!p1@PPARG!0.90!8.05!PPARG;;chr2:46524537..46524553,+!p1@EPAS1!0.89!699.05!EPAS1;;chr14:75894714..75894733,+!p1@JDP2!0.89!199.34!JDP2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.89!6.70!HOXC5;;chr7:27183263..27183284,-!p2@HOXA5!0.89!6.70!HOXA5;;chr10:77161504..77161530,-!p1@ZNF503!0.88!92.52!ZNF503;;chr2:239756671..239756732,+!p1@TWIST2!0.88!21.90!TWIST2;;chr13:41240737..41240787,-!p1@FOXO1!0.86!79.56!FOXO1;;chr8:72756637..72756664,-!p3@MSC!0.86!7.15!MSC;;chr7:27183114..27183138,-!p3@HOXA5!0.86!6.26!HOXA5;;chr15:96869222..96869251,+!p18@NR2F2!0.85!7.15!NR2F2;;chr5:72744594..72744609,-!p1@FOXD1!0.84!28.61!FOXD1;;chr8:106330696..106330719,+!p2@ZFPM2!0.84!7.60!ZFPM2;;chr1:170632285..170632309,+!p1@PRRX1!0.84!6.70!PRRX1;;chr8:49833978..49833996,-!p1@SNAI2!0.83!126.04!SNAI2;;chr10:63809013..63809041,+!p3@ARID5B!0.83!33.97!ARID5B;;chr5:92919375..92919438,+!p6@NR2F1!0.83!6.26!NR2F1;;chr11:125034605..125034636,+!p2@PKNOX2!0.83!5.81!PKNOX2;;chr2:119605056..119605071,-!p10@EN1!0.83!5.81!EN1;;chr4:174451350..174451363,-!p3@HAND2!0.83!5.81!HAND2;;chr14:95236440..95236465,-!p1@GSC!0.83!5.81!GSC;;chr14:95236551..95236576,-!p2@GSC!0.83!5.81!GSC;;chr15:96874244..96874259,+!p5@NR2F2!0.82!14.30!NR2F2;;chr7:150945754..150945789,-!p2@SMARCD3!0.81!17.88!SMARCD3;;chr3:12329397..12329433,+!p2@PPARG!0.81!12.96!PPARG;;chr18:53068911..53068935,-!p4@TCF4!0.81!6.26!TCF4;;chrX:106960221..106960236,-!p3@TSC22D3!0.80!15.64!TSC22D3;;chr11:113930291..113930339,+!p2@ZBTB16!0.80!8.94!ZBTB16;;chr11:12696071..12696086,+!p3@TEAD1!0.80!7.15!TEAD1;;chr16:86544113..86544145,+!p1@FOXF1!0.80!6.70!FOXF1;;chr10:45495946..45495976,+!p2@ZNF22!0.80!5.36!ZNF22;;chr2:8822176..8822196,+!p1@ID2!0.79!788.44!ID2;;chr14:62162258..62162269,+!p2@HIF1A!0.78!53.19!HIF1A;;chr9:132427972..132428056,+!p1@PRRX2!0.78!6.70!PRRX2;;chr6:45296048..45296082,+!p1@RUNX2!0.78!5.81!RUNX2;;chr3:178789522..178789564,-!p2@ZMAT3!0.77!39.33!ZMAT3;;chr12:54393880..54393962,+!p1@HOXC9!0.77!4.92!HOXC9;;chr12:54422217..54422239,+!p3@HOXC6!0.77!4.92!HOXC6;;chr16:31076332..31076388,-!p3@ZNF668!0.77!4.92!ZNF668;;chr17:3571863..3571881,-!p1@TAX1BP3!0.76!375.89!TAX1BP3;;chr8:72756063..72756125,-!p1@MSC!0.76!10.28!MSC;;chr15:96876966..96877017,+!p12@NR2F2!0.76!7.15!NR2F2;;chr19:50435736..50435781,+!p3@ATF5!0.76!6.70!ATF5;;chr8:72756213..72756243,-!p5@MSC!0.76!6.26!MSC;;chr15:96874216..96874236,+!p13@NR2F2!0.75!7.60!NR2F2;;chr17:1958388..1958404,+!p1@HIC1!0.74!31.73!HIC1;;chr17:46688334..46688385,-!p1@HOXB7!0.74!6.70!HOXB7;;chr15:66995062..66995065,+!p8@SMAD6!0.74!4.47!SMAD6;;chr3:12392932..12392962,+!p8@PPARG!0.74!4.47!PPARG;;chr3:12392991..12393030,+!p7@PPARG!0.74!4.47!PPARG;;chr7:150945865..150945896,-!p4@SMARCD3!0.74!4.47!SMARCD3;;chr13:37494275..37494304,-!p2@SMAD9!0.74!4.47!SMAD9;;chr2:121493425..121493474,+!p1@GLI2!0.73!10.28!GLI2;;chr5:72744445..72744466,-!p2@FOXD1!0.73!7.60!FOXD1;;chr6:85474299..85474324,-!p1@TBX18!0.72!8.05!TBX18;;chr5:158526459..158526481,-!p2@EBF1!0.72!5.81!EBF1;;chr2:28618532..28618610,+!p4@FOSL2!0.71!7.60!FOSL2;;chr21:36260773..36260804,-!p7@RUNX1!0.71!5.81!RUNX1;;chr2:119604456..119604501,-!p2@EN1!0.70!4.02!EN1;;chr4:111544219..111544240,-!p1@PITX2!0.70!4.02!PITX2;;chr4:111558135..111558198,-!p2@PITX2!0.70!4.02!PITX2;;chr8:72756380..72756427,-!p8@MSC!0.70!4.02!MSC;;chr11:125034640..125034655,+!p1@PKNOX2!0.70!4.02!PKNOX2;;chr11:46299443..46299459,+!p4@CREB3L1!0.70!4.02!CREB3L1;;chr12:54394416..54394467,+!p5@HOXC9!0.70!4.02!HOXC9;;chr12:54410948..54410992,+!p3@HOXC5!0.70!4.02!HOXC5;;chr3:187463179..187463201,-!p2@BCL6!0.69!17.88!BCL6;;chr7:19157043..19157088,-!p2@TWIST1!0.69!10.73!TWIST1;;chr6:144289132..144289134,-!p3@PLAGL1!0.69!9.83!PLAGL1;;chr2:46602879..46602899,+!p8@EPAS1!0.69!4.92!EPAS1;;chr16:31454084..31454115,-!p1@ZNF843!0.69!4.47!ZNF843;;chr14:21566731..21566836,-!p1@ZNF219!0.67!46.04!ZNF219;;chrX:106960249..106960260,-!p5@TSC22D3!0.67!6.26!TSC22D3;;chr10:51572408..51572454,+!p3@NCOA4!0.66!24.14!NCOA4;;chr12:54402790..54402805,+!p2@HOXC8!0.66!3.58!HOXC8;;chr1:40105299..40105326,-!p1@HEYL!0.66!3.58!HEYL;;chr15:96869165..96869183,+!p20@NR2F2!0.66!3.58!NR2F2;;chr17:46659728..46659749,-!p3@HOXB3!0.66!3.58!HOXB3;;chr5:158527139..158527161,-!p5@EBF1!0.66!3.58!EBF1;;chr8:77593750..77593757,+!p3@ZFHX4!0.66!3.58!ZFHX4;;chr20:39946361..39946379,-!p2@ZHX3!0.65!11.62!ZHX3;;chr15:96869292..96869320,+!p15@NR2F2!0.65!5.36!NR2F2;;chr2:46602901..46602926,+!p7@EPAS1!0.65!4.92!EPAS1;;chr2:66662895..66662907,+!p3@MEIS1!0.65!4.47!MEIS1;;chr3:69788576..69788648,+!p1@MITF!0.64!21.01!MITF;;chr12:104531785..104531812,-!p3@NFYB!0.64!9.83!NFYB;;chr17:46687959..46688007,-!p2@HOXB7!0.64!4.92!HOXB7;;chr14:62162285..62162296,+!p3@HIF1A!0.63!19.67!HIF1A;;chr19:47922750..47922795,-!p1@MEIS3!0.63!5.81!MEIS3;;chr9:73028814..73028895,-!p1@KLF9!0.62!37.54!KLF9;;chr10:77161533..77161546,-!p2@ZNF503!0.62!14.75!ZNF503;;chr16:1429627..1429662,-!p2@UNKL!0.62!10.73!UNKL;;chr1:23696308..23696339,-!p2@ZNF436!0.62!7.60!ZNF436;;chr17:20492136..20492165,+!p1@MEIS3P2!0.62!5.36!MEIS3P2;;chr15:76629097..76629120,+!p2@ISL2!0.62!3.58!ISL2;;chr17:40440446..40440464,+!p5@STAT5A!0.62!3.13!STAT5A;;chr10:114889045..114889074,+!p12@TCF7L2!0.62!3.13!TCF7L2;;chr10:31610110..31610159,+!p2@ZEB1!0.62!3.13!ZEB1;;chr13:37494248..37494260,-!p3@SMAD9!0.62!3.13!SMAD9;;chr7:27183191..27183214,-!p4@HOXA5!0.62!3.13!HOXA5;;chr7:27196267..27196311,-!p1@HOXA7!0.62!3.13!HOXA7;;chr19:13134772..13134822,+!p2@NFIX!0.61!4.92!NFIX;;chr20:48807615..48807644,+!p6@CEBPB!0.60!5.36!CEBPB;;chr2:85980951..85981004,+!p1@ATOH8!0.60!5.36!ATOH8;;chr2:145282041..145282092,-!p8@ZEB2!0.60!4.92!ZEB2;;chr3:141747441..141747452,-!p4@TFDP2!0.60!4.47!TFDP2;;chr12:56753869..56753930,-!p1@STAT2!0.59!156.88!STAT2;;chr9:73029219..73029289,-!p2@KLF9!0.59!10.28!KLF9;;chr14:62203749..62203798,+!p5@HIF1A!0.59!4.92!HIF1A;;chr8:48650715..48650735,-!p1@CEBPD!0.58!444.28!CEBPD;;chr19:36545128..36545203,-!p1@THAP8!0.58!15.64!THAP8;;chr5:92918894..92918912,+!p2@NR2F1!0.58!10.73!NR2F1;;chr15:66994663..66994680,+!p1@SMAD6!0.58!7.60!SMAD6;;chr7:137686763..137686784,-!p5@CREB3L2!0.58!5.36!CREB3L2;;chr2:208031943..208031978,-!p5@KLF7!0.58!4.02!KLF7;;chr2:66662249..66662267,+!p2@MEIS1!0.57!12.51!MEIS1;;chr12:80084737..80084763,-!p3@PAWR!0.57!12.07!PAWR;;chr11:46299186..46299195,+!p3@CREB3L1!0.57!3.13!CR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| |expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.40!248.51!TCF21;;chr4:174451370..174451387,-!p1@HAND2!1.68!46.48!HAND2;;chr19:33793430..33793447,-!p1@CEBPA!1.59!154.65!CEBPA;;chr11:47279504..47279563,+!p1@NR1H3!1.53!73.30!NR1H3;;chr19:46801639..46801699,+!p1@HIF3A!1.50!30.84!HIF3A;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.45!27.26!HOXC5;;chr5:158526917..158526932,-!p1@EBF1!1.39!58.10!EBF1;;chr3:126076242..126076257,-!p1@KLF15!1.38!28.61!KLF15;;chr17:46682321..46682362,-!p1@HOXB6!1.38!23.24!HOXB6;;chr5:92918919..92918942,+!p1@NR2F1!1.35!92.97!NR2F1;;chr9:96717629..96717644,-!p1@BARX1!1.33!20.56!BARX1;;chrX:106960180..106960197,-!p2@TSC22D3!1.31!71.96!TSC22D3;;chr2:46612334..46612349,+!p6@EPAS1!1.30!25.03!EPAS1;;chr15:42749722..42749739,-!p2@ZFP106!1.29!33.08!ZFP106;;chr8:99956662..99956684,+!p1@OSR2!1.28!27.71!OSR2;;chr5:92919100..92919135,+!p3@NR2F1!1.27!21.45!NR2F1;;chr1:23885981..23886002,-!p1@ID3!1.23!2730.04!ID3;;chr11:113930425..113930471,+!p1@ZBTB16!1.23!23.24!ZBTB16;;chr4:174450089..174450153,-!p2@HAND2!1.23!16.09!HAND2;;chr7:44143978..44143989,+!p2@AEBP1!1.22!28.16!AEBP1;;chr2:119605214..119605230,-!p1@EN1!1.22!15.64!EN1;;chrX:106960285..106960299,-!p1@TSC22D3!1.20!393.77!TSC22D3;;chr17:46675420..46675465,-!p3@HOXB6!1.20!16.98!HOXB6;;chr8:49833948..49833973,-!p2@SNAI2!1.18!88.05!SNAI2;;chr17:1959369..1959388,+!p2@HIC1!1.18!37.54!HIC1;;chr12:54402745..54402788,+!p1@HOXC8!1.18!14.30!HOXC8;;chr7:44143925..44143970,+!p1@AEBP1!1.17!305.27!AEBP1;;chr11:46299539..46299620,+!p2@CREB3L1!1.17!23.24!CREB3L1;;chr8:72756667..72756736,-!p2@MSC!1.17!21.45!MSC;;chr17:46675469..46675481,-!p4@HOXB6!1.16!13.41!HOXB6;;chr6:19837592..19837621,+!p1@ID4!1.15!80.01!ID4;;chr8:25902876..25902936,-!p1@EBF2!1.13!12.51!EBF2;;chr13:41240717..41240735,-!p2@FOXO1!1.12!83.13!FOXO1;;chr19:47523058..47523114,+!p1@NPAS1!1.12!12.07!NPAS1;;chr19:50432453..50432468,+!p1@ATF5!1.08!614.12!ATF5;;chr6:144329384..144329405,-!p1@PLAGL1!1.08!128.72!PLAGL1;;chr15:96873984..96873999,+!p3@NR2F2!1.07!79.11!NR2F2;;chr2:27357446..27357475,-!p2@PREB!1.07!37.54!PREB;;chr15:96869255..96869291,+!p6@NR2F2!1.05!18.77!NR2F2;;chr18:19749541..19749557,+!p1@GATA6!1.03!31.29!GATA6;;chr7:150946015..150946070,-!p3@SMARCD3!1.03!21.45!SMARCD3;;chr12:80085061..80085119,-!p6@PAWR!1.03!15.64!PAWR;;chrX:107019163..107019179,-!p7@TSC22D3!1.03!11.17!TSC22D3;;chr8:106330656..106330684,+!p1@ZFPM2!1.02!25.03!ZFPM2;;chr7:27192185..27192209,-!p1@HOXA3!1.02!9.39!HOXA3;;chr2:19558373..19558392,-!p1@OSR1!1.01!25.92!OSR1;;chr11:46299199..46299233,+!p1@CREB3L1!1.00!47.82!CREB3L1;;chr12:54394309..54394336,+!p2@HOXC9!1.00!8.94!HOXC9;;chr17:46690839..46690884,-!p1@HOXB8!1.00!8.94!HOXB8;;chr15:96874145..96874166,+!p7@NR2F2!0.98!16.54!NR2F2;;chr10:131762504..131762555,-!p1@EBF3!0.98!8.49!EBF3;;chr8:72756267..72756296,-!p4@MSC!0.97!12.51!MSC;;chr7:44143997..44144008,+!p3@AEBP1!0.97!10.73!AEBP1;;chr7:73038839..73038862,-!p1@MLXIPL!0.96!8.05!MLXIPL;;chrY:2803415..2803468,+!p1@ZFY!0.96!8.05!ZFY;;chr10:114710244..114710257,+!p3@TCF7L2!0.95!22.35!TCF7L2;;chr3:126076264..126076305,-!p2@KLF15!0.95!11.17!KLF15;;chr15:96874012..96874042,+!p2@NR2F2!0.94!71.96!NR2F2;;chr5:92918956..92918969,+!p4@NR2F1!0.94!8.49!NR2F1;;chr2:239756739..239756755,+!p2@TWIST2!0.93!12.96!TWIST2;;chr7:19157248..19157268,-!p1@TWIST1!0.92!21.01!TWIST1;;chr18:19749386..19749404,+!p2@GATA6!0.92!10.73!GATA6;;chr5:92919068..92919082,+!p5@NR2F1!0.91!8.49!NR2F1;;chrY:21906594..21906622,-!p1@KDM5D!0.91!7.15!KDM5D;;chr9:96717678..96717689,-!p2@BARX1!0.91!7.15!BARX1;;chr11:113930401..113930422,+!p3@ZBTB16!0.91!7.15!ZBTB16;;chr2:66662281..66662308,+!p1@MEIS1!0.90!25.03!MEIS1;;chr15:96874927..96874938,+!p8@NR2F2!0.90!15.20!NR2F2;;chr3:12330560..12330579,+!p1@PPARG!0.90!8.05!PPARG;;chr2:46524537..46524553,+!p1@EPAS1!0.89!699.05!EPAS1;;chr14:75894714..75894733,+!p1@JDP2!0.89!199.34!JDP2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.89!6.70!HOXC5;;chr7:27183263..27183284,-!p2@HOXA5!0.89!6.70!HOXA5;;chr10:77161504..77161530,-!p1@ZNF503!0.88!92.52!ZNF503;;chr2:239756671..239756732,+!p1@TWIST2!0.88!21.90!TWIST2;;chr13:41240737..41240787,-!p1@FOXO1!0.86!79.56!FOXO1;;chr8:72756637..72756664,-!p3@MSC!0.86!7.15!MSC;;chr7:27183114..27183138,-!p3@HOXA5!0.86!6.26!HOXA5;;chr15:96869222..96869251,+!p18@NR2F2!0.85!7.15!NR2F2;;chr5:72744594..72744609,-!p1@FOXD1!0.84!28.61!FOXD1;;chr8:106330696..106330719,+!p2@ZFPM2!0.84!7.60!ZFPM2;;chr1:170632285..170632309,+!p1@PRRX1!0.84!6.70!PRRX1;;chr8:49833978..49833996,-!p1@SNAI2!0.83!126.04!SNAI2;;chr10:63809013..63809041,+!p3@ARID5B!0.83!33.97!ARID5B;;chr5:92919375..92919438,+!p6@NR2F1!0.83!6.26!NR2F1;;chr11:125034605..125034636,+!p2@PKNOX2!0.83!5.81!PKNOX2;;chr2:119605056..119605071,-!p10@EN1!0.83!5.81!EN1;;chr4:174451350..174451363,-!p3@HAND2!0.83!5.81!HAND2;;chr14:95236440..95236465,-!p1@GSC!0.83!5.81!GSC;;chr14:95236551..95236576,-!p2@GSC!0.83!5.81!GSC;;chr15:96874244..96874259,+!p5@NR2F2!0.82!14.30!NR2F2;;chr7:150945754..150945789,-!p2@SMARCD3!0.81!17.88!SMARCD3;;chr3:12329397..12329433,+!p2@PPARG!0.81!12.96!PPARG;;chr18:53068911..53068935,-!p4@TCF4!0.81!6.26!TCF4;;chrX:106960221..106960236,-!p3@TSC22D3!0.80!15.64!TSC22D3;;chr11:113930291..113930339,+!p2@ZBTB16!0.80!8.94!ZBTB16;;chr11:12696071..12696086,+!p3@TEAD1!0.80!7.15!TEAD1;;chr16:86544113..86544145,+!p1@FOXF1!0.80!6.70!FOXF1;;chr10:45495946..45495976,+!p2@ZNF22!0.80!5.36!ZNF22;;chr2:8822176..8822196,+!p1@ID2!0.79!788.44!ID2;;chr14:62162258..62162269,+!p2@HIF1A!0.78!53.19!HIF1A;;chr9:132427972..132428056,+!p1@PRRX2!0.78!6.70!PRRX2;;chr6:45296048..45296082,+!p1@RUNX2!0.78!5.81!RUNX2;;chr3:178789522..178789564,-!p2@ZMAT3!0.77!39.33!ZMAT3;;chr12:54393880..54393962,+!p1@HOXC9!0.77!4.92!HOXC9;;chr12:54422217..54422239,+!p3@HOXC6!0.77!4.92!HOXC6;;chr16:31076332..31076388,-!p3@ZNF668!0.77!4.92!ZNF668;;chr17:3571863..3571881,-!p1@TAX1BP3!0.76!375.89!TAX1BP3;;chr8:72756063..72756125,-!p1@MSC!0.76!10.28!MSC;;chr15:96876966..96877017,+!p12@NR2F2!0.76!7.15!NR2F2;;chr19:50435736..50435781,+!p3@ATF5!0.76!6.70!ATF5;;chr8:72756213..72756243,-!p5@MSC!0.76!6.26!MSC;;chr15:96874216..96874236,+!p13@NR2F2!0.75!7.60!NR2F2;;chr17:1958388..1958404,+!p1@HIC1!0.74!31.73!HIC1;;chr17:46688334..46688385,-!p1@HOXB7!0.74!6.70!HOXB7;;chr15:66995062..66995065,+!p8@SMAD6!0.74!4.47!SMAD6;;chr3:12392932..12392962,+!p8@PPARG!0.74!4.47!PPARG;;chr3:12392991..12393030,+!p7@PPARG!0.74!4.47!PPARG;;chr7:150945865..150945896,-!p4@SMARCD3!0.74!4.47!SMARCD3;;chr13:37494275..37494304,-!p2@SMAD9!0.74!4.47!SMAD9;;chr2:121493425..121493474,+!p1@GLI2!0.73!10.28!GLI2;;chr5:72744445..72744466,-!p2@FOXD1!0.73!7.60!FOXD1;;chr6:85474299..85474324,-!p1@TBX18!0.72!8.05!TBX18;;chr5:158526459..158526481,-!p2@EBF1!0.72!5.81!EBF1;;chr2:28618532..28618610,+!p4@FOSL2!0.71!7.60!FOSL2;;chr21:36260773..36260804,-!p7@RUNX1!0.71!5.81!RUNX1;;chr2:119604456..119604501,-!p2@EN1!0.70!4.02!EN1;;chr4:111544219..111544240,-!p1@PITX2!0.70!4.02!PITX2;;chr4:111558135..111558198,-!p2@PITX2!0.70!4.02!PITX2;;chr8:72756380..72756427,-!p8@MSC!0.70!4.02!MSC;;chr11:125034640..125034655,+!p1@PKNOX2!0.70!4.02!PKNOX2;;chr11:46299443..46299459,+!p4@CREB3L1!0.70!4.02!CREB3L1;;chr12:54394416..54394467,+!p5@HOXC9!0.70!4.02!HOXC9;;chr12:54410948..54410992,+!p3@HOXC5!0.70!4.02!HOXC5;;chr3:187463179..187463201,-!p2@BCL6!0.69!17.88!BCL6;;chr7:19157043..19157088,-!p2@TWIST1!0.69!10.73!TWIST1;;chr6:144289132..144289134,-!p3@PLAGL1!0.69!9.83!PLAGL1;;chr2:46602879..46602899,+!p8@EPAS1!0.69!4.92!EPAS1;;chr16:31454084..31454115,-!p1@ZNF843!0.69!4.47!ZNF843;;chr14:21566731..21566836,-!p1@ZNF219!0.67!46.04!ZNF219;;chrX:106960249..106960260,-!p5@TSC22D3!0.67!6.26!TSC22D3;;chr10:51572408..51572454,+!p3@NCOA4!0.66!24.14!NCOA4;;chr12:54402790..54402805,+!p2@HOXC8!0.66!3.58!HOXC8;;chr1:40105299..40105326,-!p1@HEYL!0.66!3.58!HEYL;;chr15:96869165..96869183,+!p20@NR2F2!0.66!3.58!NR2F2;;chr17:46659728..46659749,-!p3@HOXB3!0.66!3.58!HOXB3;;chr5:158527139..158527161,-!p5@EBF1!0.66!3.58!EBF1;;chr8:77593750..77593757,+!p3@ZFHX4!0.66!3.58!ZFHX4;;chr20:39946361..39946379,-!p2@ZHX3!0.65!11.62!ZHX3;;chr15:96869292..96869320,+!p15@NR2F2!0.65!5.36!NR2F2;;chr2:46602901..46602926,+!p7@EPAS1!0.65!4.92!EPAS1;;chr2:66662895..66662907,+!p3@MEIS1!0.65!4.47!MEIS1;;chr3:69788576..69788648,+!p1@MITF!0.64!21.01!MITF;;chr12:104531785..104531812,-!p3@NFYB!0.64!9.83!NFYB;;chr17:46687959..46688007,-!p2@HOXB7!0.64!4.92!HOXB7;;chr14:62162285..62162296,+!p3@HIF1A!0.63!19.67!HIF1A;;chr19:47922750..47922795,-!p1@MEIS3!0.63!5.81!MEIS3;;chr9:73028814..73028895,-!p1@KLF9!0.62!37.54!KLF9;;chr10:77161533..77161546,-!p2@ZNF503!0.62!14.75!ZNF503;;chr16:1429627..1429662,-!p2@UNKL!0.62!10.73!UNKL;;chr1:23696308..23696339,-!p2@ZNF436!0.62!7.60!ZNF436;;chr17:20492136..20492165,+!p1@MEIS3P2!0.62!5.36!MEIS3P2;;chr15:76629097..76629120,+!p2@ISL2!0.62!3.58!ISL2;;chr17:40440446..40440464,+!p5@STAT5A!0.62!3.13!STAT5A;;chr10:114889045..114889074,+!p12@TCF7L2!0.62!3.13!TCF7L2;;chr10:31610110..31610159,+!p2@ZEB1!0.62!3.13!ZEB1;;chr13:37494248..37494260,-!p3@SMAD9!0.62!3.13!SMAD9;;chr7:27183191..27183214,-!p4@HOXA5!0.62!3.13!HOXA5;;chr7:27196267..27196311,-!p1@HOXA7!0.62!3.13!HOXA7;;chr19:13134772..13134822,+!p2@NFIX!0.61!4.92!NFIX;;chr20:48807615..48807644,+!p6@CEBPB!0.60!5.36!CEBPB;;chr2:85980951..85981004,+!p1@ATOH8!0.60!5.36!ATOH8;;chr2:145282041..145282092,-!p8@ZEB2!0.60!4.92!ZEB2;;chr3:141747441..141747452,-!p4@TFDP2!0.60!4.47!TFDP2;;chr12:56753869..56753930,-!p1@STAT2!0.59!156.88!STAT2;;chr9:73029219..73029289,-!p2@KLF9!0.59!10.28!KLF9;;chr14:62203749..62203798,+!p5@HIF1A!0.59!4.92!HIF1A;;chr8:48650715..48650735,-!p1@CEBPD!0.58!444.28!CEBPD;;chr19:36545128..36545203,-!p1@THAP8!0.58!15.64!THAP8;;chr5:92918894..92918912,+!p2@NR2F1!0.58!10.73!NR2F1;;chr15:66994663..66994680,+!p1@SMAD6!0.58!7.60!SMAD6;;chr7:137686763..137686784,-!p5@CREB3L2!0.58!5.36!CREB3L2;;chr2:208031943..208031978,-!p5@KLF7!0.58!4.02!KLF7;;chr2:66662249..66662267,+!p2@MEIS1!0.57!12.51!MEIS1;;chr12:80084737..80084763,-!p3@PAWR!0.57!12.07!PAWR;;chr11:46299186..46299195,+!p3@CREB3L1!0.57!3.13!CR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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000136;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002615;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001013;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001178;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002323 | |||
|ffid_belonging_in_development=CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520omental%252c%2520donor3.CNhs12068.11475-119C8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520omental%252c%2520donor3.CNhs12068.11475-119C8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520omental%252c%2520donor3.CNhs12068.11475-119C8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520omental%252c%2520donor3.CNhs12068.11475-119C8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Adipocyte%2520-%2520omental%252c%2520donor3.CNhs12068.11475-119C8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11475-119C8 | |id=FF:11475-119C8 | ||
|is_a=EFO:0002091;;FF:0000039 | |is_a=EFO:0002091;;FF:0000039 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12068 | |||
|library_id_phase_based=2:CNhs12068 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11475 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10002.GTGAAA.11475 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11475 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10002.GTGAAA.11475 | |||
|name=Adipocyte - omental, donor3 | |name=Adipocyte - omental, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 43: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12068,LSID838,release011,COMPLETED | |profile_hcage=CNhs12068,LSID838,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10002,,, | |profile_srnaseq=SRhi10002,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.000138823974809993,0,0,0.348371551189368,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462493226551568,0,0,0,0,0,0.411890272842417,0,0,0.0275002642823338,0,0,0,0,0,0,0,0,0,0,0,0,0.380339897667198,0.160456854061196,0,0,0.160456854061196,0,0,0,0,-0.0242150211128343,0,0,0,0.160456854061196,0,0,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.160456854061196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0818797296125868,0,0,0,-0.0584468268118252,0.139269048659395,0,0.615816236899996,0.080228427030598,0,0.0624215028234897,0.0841570627161575,0,0,0,0,0,0,0.160456854061196,0,0,0,0,0,0,0,0,0,0,0.0883162862085715,0,0,0,0.024963193880336,0.0560864523357778,0,0,0,0,0,0 | |||
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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 57: | Line 82: | ||
|rna_tube_id=119C8 | |rna_tube_id=119C8 | ||
|rna_weight_ug=20.7 | |rna_weight_ug=20.7 | ||
|rnaseq_library_id=SRhi10002.GTGAAA | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 79: | Line 106: | ||
|top_motifs=RXRA_VDR{dimer}:2.45957886027;GZF1:2.26333883646;ESR1:2.16002827729;NKX2-2,8:2.1257120864;UFEwm:2.11543210444;EBF1:2.1107399591;PAX1,9:2.05993085514;HES1:2.01045080548;IKZF1:1.97942383037;SMAD1..7,9:1.9527721518;TFAP4:1.94962762397;XBP1:1.91675021886;SRF:1.86026581531;ATF6:1.82768378661;TAL1_TCF{3,4,12}:1.79459058473;MAFB:1.75203521901;HIF1A:1.7008239556;GLI1..3:1.63494106248;ZNF238:1.5426498173;AR:1.50802200831;NR3C1:1.50594670901;GCM1,2:1.48885186775;KLF4:1.44903558987;TEAD1:1.41413401143;FOXL1:1.41349841019;ARID5B:1.3257414434;RXR{A,B,G}:1.26921188743;HOX{A5,B5}:1.21543632264;ESRRA:1.2036598752;TFCP2:1.19192809779;TP53:1.13374251494;TFAP2{A,C}:1.07677493727;ZNF423:1.00440641808;NFE2L1:0.987375817938;LHX3,4:0.98706246346;bHLH_family:0.960649341091;NKX3-1:0.958165327059;SPZ1:0.953177920537;MYBL2:0.926518150844;HMGA1,2:0.91875881588;TLX1..3_NFIC{dimer}:0.910426673719;PAX6:0.904607981029;MAZ:0.880535594784;NR6A1:0.837670104422;MTF1:0.817979848718;HMX1:0.815365086981;PAX5:0.814918867603;MTE{core}:0.780574065169;NFATC1..3:0.780156417434;EVI1:0.753654612087;NHLH1,2:0.748025506182;TEF:0.74698958752;ZBTB6:0.729451503628;STAT2,4,6:0.715210655325;GTF2I:0.69696867148;FOXO1,3,4:0.689361489053;NR1H4:0.689115197877;ALX4:0.672529022601;NANOG{mouse}:0.645312987782;GFI1B:0.642482866988;ZNF148:0.639191416121;NKX2-1,4:0.59169307823;DBP:0.54007536302;PATZ1:0.519726912694;HOXA9_MEIS1:0.513329720525;HOX{A6,A7,B6,B7}:0.496960523642;ZIC1..3:0.466883495838;HNF4A_NR2F1,2:0.450821503164;GTF2A1,2:0.434310729165;HOX{A4,D4}:0.412725654793;EN1,2:0.390627842286;TBP:0.382965153897;PPARG:0.376191945338;TFAP2B:0.349585806756;TBX4,5:0.32056086171;HIC1:0.320477814188;GATA4:0.306460548517;HLF:0.275057466126;HSF1,2:0.270544978791;NFIX:0.255356447746;MZF1:0.236084337478;MYFfamily:0.233381404833;NKX3-2:0.224898663062;POU6F1:0.212937102494;RORA:0.174837298494;REST:0.165875487733;FOXP3:0.129084134162;STAT1,3:0.128384150797;MEF2{A,B,C,D}:0.127870321415;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0762781407292;FOXA2:0.0666878530563;SOX5:0.0564252009415;NFE2L2:0.050551612956;NR5A1,2:0.0491600364981;SREBF1,2:0.0391321434777;SOX17:0.0124399359015;TGIF1:0.0111097423525;HAND1,2:-0.0480689511161;CDC5L:-0.0753068024304;ZNF384:-0.0792523994415;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.094845581857;MED-1{core}:-0.163679695492;PRDM1:-0.17723530856;HNF1A:-0.178640765382;SP1:-0.182068006107;RREB1:-0.203327526431;EP300:-0.204601280951;NFIL3:-0.242292839621;FOXD3:-0.268916179101;ZNF143:-0.301496952215;MYB:-0.301689789541;FOX{D1,D2}:-0.335140270934;ATF4:-0.336988657741;YY1:-0.338300726885;AHR_ARNT_ARNT2:-0.349836327307;CEBPA,B_DDIT3:-0.36190049429;BACH2:-0.380941437255;ELK1,4_GABP{A,B1}:-0.428305268376;CRX:-0.445690516487;NFE2:-0.479078151412;IRF1,2:-0.480403180435;TLX2:-0.508601315758;NRF1:-0.521672146886;XCPE1{core}:-0.526220752358;PAX3,7:-0.537264395166;RFX1:-0.539104261126;FOXM1:-0.55333846827;JUN:-0.570733948509;PAX2:-0.575697668541;NFKB1_REL_RELA:-0.595123116877;SNAI1..3:-0.617455560659;PRRX1,2:-0.625271781021;GFI1:-0.625636980152;GATA6:-0.640080208963;POU3F1..4:-0.644665605037;BREu{core}:-0.657324727552;FOS_FOS{B,L1}_JUN{B,D}:-0.664265227414;AIRE:-0.670336628334;ONECUT1,2:-0.671005393246;ATF2:-0.675682248935;ATF5_CREB3:-0.695211666605;FOSL2:-0.697724026362;RFX2..5_RFXANK_RFXAP:-0.703018829967;CREB1:-0.707680751474;SOX2:-0.712498669159;SPI1:-0.735102472303;ETS1,2:-0.739196694024;RUNX1..3:-0.747747491672;ZFP161:-0.755918351485;ELF1,2,4:-0.767988264969;SPIB:-0.776981709004;LMO2:-0.810584475136;RBPJ:-0.815763033448;NKX6-1,2:-0.826086980312;FOXP1:-0.843447204567;EGR1..3:-0.843984442261;DMAP1_NCOR{1,2}_SMARC:-0.865299829061;FOX{I1,J2}:-0.866580913165;IKZF2:-0.875062396849;STAT5{A,B}:-0.934825477359;IRF7:-0.936023065403;PDX1:-0.995855849473;PAX4:-1.00068936604;ZBTB16:-1.00730959158;NFY{A,B,C}:-1.04524943668;ZEB1:-1.05349278142;FOX{F1,F2,J1}:-1.08516344654;POU5F1:-1.10076459286;MYOD1:-1.14541153829;ADNP_IRX_SIX_ZHX:-1.1476910602;PBX1:-1.1867169811;PITX1..3:-1.22825235656;OCT4_SOX2{dimer}:-1.25342831127;TFDP1:-1.28021287511;CDX1,2,4:-1.29275472234;TOPORS:-1.30410531136;FOXN1:-1.31571105304;BPTF:-1.35230846179;T:-1.35485792853;LEF1_TCF7_TCF7L1,2:-1.45854681001;ALX1:-1.47339987609;PAX8:-1.4858445857;SOX{8,9,10}:-1.49315259959;HBP1_HMGB_SSRP1_UBTF:-1.5010250135;CUX2:-1.51589381886;E2F1..5:-1.5383539469;POU1F1:-1.60440203278;VSX1,2:-1.60801763566;NKX2-3_NKX2-5:-1.63902267617;NANOG:-1.67923918772;FOXQ1:-1.6962434076;POU2F1..3:-2.26159261065 | |top_motifs=RXRA_VDR{dimer}:2.45957886027;GZF1:2.26333883646;ESR1:2.16002827729;NKX2-2,8:2.1257120864;UFEwm:2.11543210444;EBF1:2.1107399591;PAX1,9:2.05993085514;HES1:2.01045080548;IKZF1:1.97942383037;SMAD1..7,9:1.9527721518;TFAP4:1.94962762397;XBP1:1.91675021886;SRF:1.86026581531;ATF6:1.82768378661;TAL1_TCF{3,4,12}:1.79459058473;MAFB:1.75203521901;HIF1A:1.7008239556;GLI1..3:1.63494106248;ZNF238:1.5426498173;AR:1.50802200831;NR3C1:1.50594670901;GCM1,2:1.48885186775;KLF4:1.44903558987;TEAD1:1.41413401143;FOXL1:1.41349841019;ARID5B:1.3257414434;RXR{A,B,G}:1.26921188743;HOX{A5,B5}:1.21543632264;ESRRA:1.2036598752;TFCP2:1.19192809779;TP53:1.13374251494;TFAP2{A,C}:1.07677493727;ZNF423:1.00440641808;NFE2L1:0.987375817938;LHX3,4:0.98706246346;bHLH_family:0.960649341091;NKX3-1:0.958165327059;SPZ1:0.953177920537;MYBL2:0.926518150844;HMGA1,2:0.91875881588;TLX1..3_NFIC{dimer}:0.910426673719;PAX6:0.904607981029;MAZ:0.880535594784;NR6A1:0.837670104422;MTF1:0.817979848718;HMX1:0.815365086981;PAX5:0.814918867603;MTE{core}:0.780574065169;NFATC1..3:0.780156417434;EVI1:0.753654612087;NHLH1,2:0.748025506182;TEF:0.74698958752;ZBTB6:0.729451503628;STAT2,4,6:0.715210655325;GTF2I:0.69696867148;FOXO1,3,4:0.689361489053;NR1H4:0.689115197877;ALX4:0.672529022601;NANOG{mouse}:0.645312987782;GFI1B:0.642482866988;ZNF148:0.639191416121;NKX2-1,4:0.59169307823;DBP:0.54007536302;PATZ1:0.519726912694;HOXA9_MEIS1:0.513329720525;HOX{A6,A7,B6,B7}:0.496960523642;ZIC1..3:0.466883495838;HNF4A_NR2F1,2:0.450821503164;GTF2A1,2:0.434310729165;HOX{A4,D4}:0.412725654793;EN1,2:0.390627842286;TBP:0.382965153897;PPARG:0.376191945338;TFAP2B:0.349585806756;TBX4,5:0.32056086171;HIC1:0.320477814188;GATA4:0.306460548517;HLF:0.275057466126;HSF1,2:0.270544978791;NFIX:0.255356447746;MZF1:0.236084337478;MYFfamily:0.233381404833;NKX3-2:0.224898663062;POU6F1:0.212937102494;RORA:0.174837298494;REST:0.165875487733;FOXP3:0.129084134162;STAT1,3:0.128384150797;MEF2{A,B,C,D}:0.127870321415;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0762781407292;FOXA2:0.0666878530563;SOX5:0.0564252009415;NFE2L2:0.050551612956;NR5A1,2:0.0491600364981;SREBF1,2:0.0391321434777;SOX17:0.0124399359015;TGIF1:0.0111097423525;HAND1,2:-0.0480689511161;CDC5L:-0.0753068024304;ZNF384:-0.0792523994415;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.094845581857;MED-1{core}:-0.163679695492;PRDM1:-0.17723530856;HNF1A:-0.178640765382;SP1:-0.182068006107;RREB1:-0.203327526431;EP300:-0.204601280951;NFIL3:-0.242292839621;FOXD3:-0.268916179101;ZNF143:-0.301496952215;MYB:-0.301689789541;FOX{D1,D2}:-0.335140270934;ATF4:-0.336988657741;YY1:-0.338300726885;AHR_ARNT_ARNT2:-0.349836327307;CEBPA,B_DDIT3:-0.36190049429;BACH2:-0.380941437255;ELK1,4_GABP{A,B1}:-0.428305268376;CRX:-0.445690516487;NFE2:-0.479078151412;IRF1,2:-0.480403180435;TLX2:-0.508601315758;NRF1:-0.521672146886;XCPE1{core}:-0.526220752358;PAX3,7:-0.537264395166;RFX1:-0.539104261126;FOXM1:-0.55333846827;JUN:-0.570733948509;PAX2:-0.575697668541;NFKB1_REL_RELA:-0.595123116877;SNAI1..3:-0.617455560659;PRRX1,2:-0.625271781021;GFI1:-0.625636980152;GATA6:-0.640080208963;POU3F1..4:-0.644665605037;BREu{core}:-0.657324727552;FOS_FOS{B,L1}_JUN{B,D}:-0.664265227414;AIRE:-0.670336628334;ONECUT1,2:-0.671005393246;ATF2:-0.675682248935;ATF5_CREB3:-0.695211666605;FOSL2:-0.697724026362;RFX2..5_RFXANK_RFXAP:-0.703018829967;CREB1:-0.707680751474;SOX2:-0.712498669159;SPI1:-0.735102472303;ETS1,2:-0.739196694024;RUNX1..3:-0.747747491672;ZFP161:-0.755918351485;ELF1,2,4:-0.767988264969;SPIB:-0.776981709004;LMO2:-0.810584475136;RBPJ:-0.815763033448;NKX6-1,2:-0.826086980312;FOXP1:-0.843447204567;EGR1..3:-0.843984442261;DMAP1_NCOR{1,2}_SMARC:-0.865299829061;FOX{I1,J2}:-0.866580913165;IKZF2:-0.875062396849;STAT5{A,B}:-0.934825477359;IRF7:-0.936023065403;PDX1:-0.995855849473;PAX4:-1.00068936604;ZBTB16:-1.00730959158;NFY{A,B,C}:-1.04524943668;ZEB1:-1.05349278142;FOX{F1,F2,J1}:-1.08516344654;POU5F1:-1.10076459286;MYOD1:-1.14541153829;ADNP_IRX_SIX_ZHX:-1.1476910602;PBX1:-1.1867169811;PITX1..3:-1.22825235656;OCT4_SOX2{dimer}:-1.25342831127;TFDP1:-1.28021287511;CDX1,2,4:-1.29275472234;TOPORS:-1.30410531136;FOXN1:-1.31571105304;BPTF:-1.35230846179;T:-1.35485792853;LEF1_TCF7_TCF7L1,2:-1.45854681001;ALX1:-1.47339987609;PAX8:-1.4858445857;SOX{8,9,10}:-1.49315259959;HBP1_HMGB_SSRP1_UBTF:-1.5010250135;CUX2:-1.51589381886;E2F1..5:-1.5383539469;POU1F1:-1.60440203278;VSX1,2:-1.60801763566;NKX2-3_NKX2-5:-1.63902267617;NANOG:-1.67923918772;FOXQ1:-1.6962434076;POU2F1..3:-2.26159261065 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11475-119C8;search_select_hide=table117:FF:11475-119C8 | |||
}} | }} |
Latest revision as of 18:03, 4 June 2020
Name: | Adipocyte - omental, donor3 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs12068 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12068
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12068
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.856 |
10 | 10 | 0.842 |
100 | 100 | 0.7 |
101 | 101 | 0.267 |
102 | 102 | 0.0512 |
103 | 103 | 0.602 |
104 | 104 | 0.768 |
105 | 105 | 0.186 |
106 | 106 | 0.182 |
107 | 107 | 0.111 |
108 | 108 | 0.327 |
109 | 109 | 0.638 |
11 | 11 | 0.649 |
110 | 110 | 0.614 |
111 | 111 | 0.66 |
112 | 112 | 0.207 |
113 | 113 | 0.723 |
114 | 114 | 0.518 |
115 | 115 | 0.00808 |
116 | 116 | 0.0649 |
117 | 117 | 0.605 |
118 | 118 | 0.564 |
119 | 119 | 0.547 |
12 | 12 | 0.728 |
120 | 120 | 0.673 |
121 | 121 | 0.657 |
122 | 122 | 0.36 |
123 | 123 | 0.0599 |
124 | 124 | 0.927 |
125 | 125 | 0.0573 |
126 | 126 | 0.783 |
127 | 127 | 0.41 |
128 | 128 | 0.231 |
129 | 129 | 0.492 |
13 | 13 | 0.997 |
130 | 130 | 0.885 |
131 | 131 | 0.893 |
132 | 132 | 0.39 |
133 | 133 | 0.447 |
134 | 134 | 0.456 |
135 | 135 | 0.691 |
136 | 136 | 0.234 |
137 | 137 | 0.406 |
138 | 138 | 0.7 |
139 | 139 | 0.425 |
14 | 14 | 0.458 |
140 | 140 | 0.084 |
141 | 141 | 0.611 |
142 | 142 | 0.6 |
143 | 143 | 0.858 |
144 | 144 | 0.903 |
145 | 145 | 0.279 |
146 | 146 | 0.96 |
147 | 147 | 0.319 |
148 | 148 | 0.562 |
149 | 149 | 1.47989e-4 |
15 | 15 | 0.688 |
150 | 150 | 0.674 |
151 | 151 | 0.785 |
152 | 152 | 0.0845 |
153 | 153 | 0.761 |
154 | 154 | 0.338 |
155 | 155 | 0.0497 |
156 | 156 | 0.168 |
157 | 157 | 0.968 |
158 | 158 | 0.0376 |
159 | 159 | 0.754 |
16 | 16 | 0.00896 |
160 | 160 | 0.37 |
161 | 161 | 0.557 |
162 | 162 | 0.583 |
163 | 163 | 0.474 |
164 | 164 | 0.192 |
165 | 165 | 0.491 |
166 | 166 | 0.0916 |
167 | 167 | 0.316 |
168 | 168 | 0.749 |
169 | 169 | 0.018 |
17 | 17 | 0.469 |
18 | 18 | 0.385 |
19 | 19 | 0.00202 |
2 | 2 | 0.128 |
20 | 20 | 0.264 |
21 | 21 | 0.671 |
22 | 22 | 0.0504 |
23 | 23 | 0.12 |
24 | 24 | 0.403 |
25 | 25 | 0.429 |
26 | 26 | 0.94 |
27 | 27 | 0.275 |
28 | 28 | 0.152 |
29 | 29 | 0.781 |
3 | 3 | 0.772 |
30 | 30 | 0.155 |
31 | 31 | 0.335 |
32 | 32 | 9.69114e-15 |
33 | 33 | 0.661 |
34 | 34 | 0.596 |
35 | 35 | 0.566 |
36 | 36 | 0.0983 |
37 | 37 | 0.117 |
38 | 38 | 0.982 |
39 | 39 | 0.108 |
4 | 4 | 0.74 |
40 | 40 | 0.8 |
41 | 41 | 0.84 |
42 | 42 | 0.21 |
43 | 43 | 0.274 |
44 | 44 | 0.233 |
45 | 45 | 0.655 |
46 | 46 | 0.889 |
47 | 47 | 0.723 |
48 | 48 | 0.946 |
49 | 49 | 0.876 |
5 | 5 | 0.636 |
50 | 50 | 0.565 |
51 | 51 | 0.981 |
52 | 52 | 0.39 |
53 | 53 | 0.181 |
54 | 54 | 0.953 |
55 | 55 | 0.394 |
56 | 56 | 0.467 |
57 | 57 | 0.966 |
58 | 58 | 0.876 |
59 | 59 | 0.0761 |
6 | 6 | 0.721 |
60 | 60 | 0.348 |
61 | 61 | 0.556 |
62 | 62 | 0.761 |
63 | 63 | 0.313 |
64 | 64 | 0.865 |
65 | 65 | 0.176 |
66 | 66 | 0.0427 |
67 | 67 | 0.452 |
68 | 68 | 0.48 |
69 | 69 | 0.705 |
7 | 7 | 0.857 |
70 | 70 | 0.895 |
71 | 71 | 0.465 |
72 | 72 | 0.28 |
73 | 73 | 0.0304 |
74 | 74 | 0.623 |
75 | 75 | 0.776 |
76 | 76 | 0.494 |
77 | 77 | 0.00319 |
78 | 78 | 0.914 |
79 | 79 | 0.0541 |
8 | 8 | 0.42 |
80 | 80 | 0.456 |
81 | 81 | 0.469 |
82 | 82 | 0.307 |
83 | 83 | 0.483 |
84 | 84 | 0.21 |
85 | 85 | 0.00918 |
86 | 86 | 0.372 |
87 | 87 | 0.194 |
88 | 88 | 0.773 |
89 | 89 | 0.114 |
9 | 9 | 0.445 |
90 | 90 | 0.936 |
91 | 91 | 0.456 |
92 | 92 | 0.116 |
93 | 93 | 0.589 |
94 | 94 | 0.594 |
95 | 95 | 0.734 |
96 | 96 | 0.894 |
97 | 97 | 0.368 |
98 | 98 | 0.841 |
99 | 99 | 0.0233 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12068
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000039 human adipocyte of omentum tissue sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000255 (eukaryotic cell)
0000136 (fat cell)
0002615 (adipocyte of omentum tissue)
UBERON: Anatomy
0000468 (multi-cellular organism)
0003688 (omentum)
0002100 (trunk)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0004457 (cavity lining)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004923 (organ component layer)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002323 (body cavity)
0000042 (serous membrane)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0002417 (abdominal segment of trunk)
0002358 (peritoneum)
0000916 (abdomen)
0003684 (abdominal cavity)
0001178 (visceral peritoneum)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000039 (human adipocyte of omentum tissue sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)