FF:11532-120A2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000019,UBERON: | |DRA_sample_Accession=CAGE@SAMD00005165 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005165 | ||
|accession_numbers=CAGE;DRX008519;DRR009391;DRZ000816;DRZ002201;DRZ012166;DRZ013551 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037123;DRR041489;DRZ007131 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000970,UBERON:0000019,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000020,UBERON:0002203,UBERON:0001768,UBERON:0001032,UBERON:0002049,UBERON:0002200,UBERON:0006876,UBERON:0010317,UBERON:0007798,UBERON:0005969,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0004535,UBERON:0002104,UBERON:0001801,UBERON:0004456,UBERON:0001456,UBERON:0010230,UBERON:0001009,UBERON:0003956 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0002367 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000188 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Trabecular%2520Meshwork%2520Cells%252c%2520donor1.CNhs11340.11532-120A2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Trabecular%2520Meshwork%2520Cells%252c%2520donor1.CNhs11340.11532-120A2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Trabecular%2520Meshwork%2520Cells%252c%2520donor1.CNhs11340.11532-120A2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Trabecular%2520Meshwork%2520Cells%252c%2520donor1.CNhs11340.11532-120A2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Trabecular%2520Meshwork%2520Cells%252c%2520donor1.CNhs11340.11532-120A2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11532-120A2 | |id=FF:11532-120A2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000188 | ||
|is_obsolete= | |||
|library_id=CNhs11340 | |||
|library_id_phase_based=2:CNhs11340 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11532 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10008.GTCCGC.11532 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11532 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10008.GTCCGC.11532 | |||
|name=Trabecular Meshwork Cells, donor1 | |name=Trabecular Meshwork Cells, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11340,LSID769,release014,COMPLETED | |profile_hcage=CNhs11340,LSID769,release014,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10008,,, | |profile_srnaseq=SRhi10008,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.0206047707940534,0,-0.137648872901181,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0136097510560949,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.178240801573814,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.71384362386604,0,0.0647076368164436,0.139713259292333,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0461596407038735,0,0,0,0,0,0,0.130092543396431,0,0,0,-0.0584468268118252,0.0198042672015939,0,0,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,-0.0697861206481443,-0.0872951801455018,0,0,0,0,0,0 | |||
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| |||
|rna_box=120 | |rna_box=120 | ||
|rna_catalog_number=SC6595 | |rna_catalog_number=SC6595 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=120A2 | |rna_tube_id=120A2 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10008.GTCCGC | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.5717262072739e-233!GO:0043231;intracellular membrane-bound organelle;9.4460703294274e-191!GO:0043227;membrane-bound organelle;2.60396131167889e-190!GO:0043226;organelle;1.38045072829921e-189!GO:0043229;intracellular organelle;2.04656922792708e-189!GO:0005737;cytoplasm;2.74320911039435e-180!GO:0044422;organelle part;5.68694463336564e-144!GO:0044446;intracellular organelle part;7.78742097094889e-143!GO:0044444;cytoplasmic part;3.62488051893809e-128!GO:0032991;macromolecular complex;2.25059749036537e-91!GO:0044237;cellular metabolic process;8.6928598486756e-91!GO:0044238;primary metabolic process;1.17526477352179e-89!GO:0030529;ribonucleoprotein complex;1.1694014837487e-82!GO:0043170;macromolecule metabolic process;2.12831700294374e-79!GO:0005739;mitochondrion;2.48518231443632e-76!GO:0005634;nucleus;7.14076843713427e-76!GO:0043233;organelle lumen;5.24633994499225e-75!GO:0031974;membrane-enclosed lumen;5.24633994499225e-75!GO:0044428;nuclear part;2.35818020429447e-70!GO:0005515;protein binding;4.41095532687323e-69!GO:0003723;RNA binding;2.03259990266311e-61!GO:0005840;ribosome;1.49912885810594e-52!GO:0044429;mitochondrial part;4.42072511740023e-52!GO:0031090;organelle membrane;1.40422362204199e-48!GO:0003735;structural constituent of ribosome;6.88539476217537e-46!GO:0006412;translation;1.60693946324021e-45!GO:0016043;cellular component organization and biogenesis;1.65537649193313e-45!GO:0043234;protein complex;6.35653846252354e-45!GO:0019538;protein metabolic process;4.49825033020559e-44!GO:0043283;biopolymer metabolic process;5.45261452368622e-44!GO:0031981;nuclear lumen;7.08214329533507e-44!GO:0009058;biosynthetic process;1.94326471094253e-43!GO:0031967;organelle envelope;3.25192605664e-43!GO:0006396;RNA processing;3.68291506456649e-43!GO:0031975;envelope;8.05572983636097e-43!GO:0044249;cellular biosynthetic process;9.97714424741242e-42!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.75268815006813e-40!GO:0033279;ribosomal subunit;5.58694854303686e-40!GO:0044260;cellular macromolecule metabolic process;1.41137339951905e-39!GO:0044267;cellular protein metabolic process;6.93085552728233e-39!GO:0010467;gene expression;4.30294708081982e-38!GO:0009059;macromolecule biosynthetic process;3.85955273623754e-36!GO:0006996;organelle organization and biogenesis;1.23107136360857e-35!GO:0043228;non-membrane-bound organelle;5.86875449513718e-35!GO:0043232;intracellular non-membrane-bound organelle;5.86875449513718e-35!GO:0005829;cytosol;2.53898564167995e-34!GO:0006259;DNA metabolic process;2.87190183182563e-34!GO:0005740;mitochondrial envelope;8.9084611566702e-34!GO:0015031;protein transport;2.03832170778975e-33!GO:0033036;macromolecule localization;3.11362566254441e-33!GO:0016071;mRNA metabolic process;9.75764976662641e-33!GO:0031966;mitochondrial membrane;1.05328685639925e-31!GO:0008104;protein localization;2.49859710115579e-30!GO:0045184;establishment of protein localization;3.54976929639774e-30!GO:0019866;organelle inner membrane;4.22013550738645e-30!GO:0008380;RNA splicing;7.62400509547882e-30!GO:0065003;macromolecular complex assembly;1.69080433960627e-29!GO:0046907;intracellular transport;1.03823601194418e-28!GO:0005743;mitochondrial inner membrane;1.53637480772649e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.49217864984169e-28!GO:0006397;mRNA processing;7.33019964031227e-28!GO:0022607;cellular component assembly;2.00426951212192e-26!GO:0005654;nucleoplasm;4.11071992553473e-26!GO:0007049;cell cycle;6.17749572100541e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.98006638949618e-25!GO:0006886;intracellular protein transport;3.73658070271548e-24!GO:0044445;cytosolic part;1.03922088445876e-22!GO:0031980;mitochondrial lumen;1.12819684669467e-22!GO:0005759;mitochondrial matrix;1.12819684669467e-22!GO:0044451;nucleoplasm part;4.03206290961312e-22!GO:0005681;spliceosome;1.49983116352248e-21!GO:0015934;large ribosomal subunit;1.68695919303236e-21!GO:0003676;nucleic acid binding;4.51929181881643e-21!GO:0022402;cell cycle process;1.01649235382822e-20!GO:0000166;nucleotide binding;4.67062174840888e-20!GO:0000278;mitotic cell cycle;5.87221102532384e-20!GO:0015935;small ribosomal subunit;1.60282894411748e-19!GO:0006119;oxidative phosphorylation;2.62133560729372e-19!GO:0044455;mitochondrial membrane part;2.65269940159326e-19!GO:0005730;nucleolus;6.49637252515436e-19!GO:0048770;pigment granule;3.01112135218531e-18!GO:0042470;melanosome;3.01112135218531e-18!GO:0006457;protein folding;3.15542307252641e-18!GO:0005694;chromosome;1.21157710135556e-17!GO:0012505;endomembrane system;1.99285789631908e-17!GO:0005783;endoplasmic reticulum;6.65188253356068e-17!GO:0051649;establishment of cellular localization;9.24063199461883e-17!GO:0016462;pyrophosphatase activity;9.91796289661006e-17!GO:0044427;chromosomal part;1.09707600776799e-16!GO:0051186;cofactor metabolic process;1.15328890798627e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.19492163247012e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;1.35718936482378e-16!GO:0016874;ligase activity;1.65974974191225e-16!GO:0051641;cellular localization;1.67485640855464e-16!GO:0051276;chromosome organization and biogenesis;1.69655763505998e-16!GO:0017111;nucleoside-triphosphatase activity;3.14524648582662e-16!GO:0016070;RNA metabolic process;4.87103048777704e-16!GO:0005746;mitochondrial respiratory chain;6.36058823210558e-16!GO:0008134;transcription factor binding;7.69930392894246e-16!GO:0006974;response to DNA damage stimulus;1.27834881332472e-15!GO:0005761;mitochondrial ribosome;1.78473950936643e-15!GO:0000313;organellar ribosome;1.78473950936643e-15!GO:0022403;cell cycle phase;2.64114307320818e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.67131520270732e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.03687974788101e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;1.06956653777617e-14!GO:0000087;M phase of mitotic cell cycle;1.3758690743868e-14!GO:0007067;mitosis;1.55075363628131e-14!GO:0044432;endoplasmic reticulum part;1.64520747092749e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.28145148651087e-14!GO:0003954;NADH dehydrogenase activity;2.28145148651087e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.28145148651087e-14!GO:0006323;DNA packaging;5.75982993096724e-14!GO:0022618;protein-RNA complex assembly;8.54981410191286e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.57621441570851e-14!GO:0044265;cellular macromolecule catabolic process;1.14803513485282e-13!GO:0006605;protein targeting;1.3119498051743e-13!GO:0032553;ribonucleotide binding;1.47178276977314e-13!GO:0032555;purine ribonucleotide binding;1.47178276977314e-13!GO:0017076;purine nucleotide binding;1.60785352925443e-13!GO:0006260;DNA replication;1.98690866427132e-13!GO:0006512;ubiquitin cycle;2.61329712704079e-13!GO:0006281;DNA repair;3.4603679399883e-13!GO:0042775;organelle ATP synthesis coupled electron transport;8.83898497485602e-13!GO:0042773;ATP synthesis coupled electron transport;8.83898497485602e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;9.21146213707565e-13!GO:0000375;RNA splicing, via transesterification reactions;9.21146213707565e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;9.21146213707565e-13!GO:0000502;proteasome complex (sensu Eukaryota);1.45984924255357e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.63343213804512e-12!GO:0045271;respiratory chain complex I;1.63343213804512e-12!GO:0005747;mitochondrial respiratory chain complex I;1.63343213804512e-12!GO:0051082;unfolded protein binding;1.83623742945463e-12!GO:0005794;Golgi apparatus;2.31886071791744e-12!GO:0006732;coenzyme metabolic process;2.45911004968835e-12!GO:0044248;cellular catabolic process;2.86670012709384e-12!GO:0005524;ATP binding;2.9456536548304e-12!GO:0043285;biopolymer catabolic process;3.29739361786345e-12!GO:0009057;macromolecule catabolic process;3.70775052604538e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.97440082387289e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.30449981660855e-12!GO:0032559;adenyl ribonucleotide binding;4.64486970186896e-12!GO:0008135;translation factor activity, nucleic acid binding;5.61770347943198e-12!GO:0043412;biopolymer modification;5.879462345081e-12!GO:0065004;protein-DNA complex assembly;6.10384857988394e-12!GO:0009719;response to endogenous stimulus;6.2256744019758e-12!GO:0030554;adenyl nucleotide binding;7.01470860552446e-12!GO:0042254;ribosome biogenesis and assembly;8.59855542498673e-12!GO:0000279;M phase;8.90371024168986e-12!GO:0000785;chromatin;9.97272846782527e-12!GO:0006333;chromatin assembly or disassembly;1.10148830216295e-11!GO:0051726;regulation of cell cycle;1.72116779650946e-11!GO:0000074;regulation of progression through cell cycle;2.53551796392425e-11!GO:0051301;cell division;3.67406286231467e-11!GO:0009055;electron carrier activity;3.76284045189296e-11!GO:0003712;transcription cofactor activity;5.09819536703909e-11!GO:0051603;proteolysis involved in cellular protein catabolic process;5.87684158430199e-11!GO:0019941;modification-dependent protein catabolic process;8.52206858477308e-11!GO:0043632;modification-dependent macromolecule catabolic process;8.52206858477308e-11!GO:0006511;ubiquitin-dependent protein catabolic process;8.77298447343895e-11!GO:0044257;cellular protein catabolic process;1.11230190168361e-10!GO:0006464;protein modification process;1.46283188618337e-10!GO:0005635;nuclear envelope;1.51420877893539e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.71020415834562e-10!GO:0006334;nucleosome assembly;1.76735190602428e-10!GO:0006399;tRNA metabolic process;1.82668114487222e-10!GO:0005793;ER-Golgi intermediate compartment;3.04773737350124e-10!GO:0005789;endoplasmic reticulum membrane;3.04773737350124e-10!GO:0031497;chromatin assembly;3.46299206776906e-10!GO:0044453;nuclear membrane part;3.74948369370703e-10!GO:0006913;nucleocytoplasmic transport;4.56712611746492e-10!GO:0016604;nuclear body;4.76919774857461e-10!GO:0048193;Golgi vesicle transport;6.82641631355145e-10!GO:0012501;programmed cell death;8.49573127912829e-10!GO:0031965;nuclear membrane;9.21453511212123e-10!GO:0051169;nuclear transport;1.22541091799323e-09!GO:0006915;apoptosis;1.57670488824904e-09!GO:0006366;transcription from RNA polymerase II promoter;1.57670488824904e-09!GO:0030163;protein catabolic process;2.01869763826773e-09!GO:0003743;translation initiation factor activity;2.87693186218772e-09!GO:0043687;post-translational protein modification;4.91677451967773e-09!GO:0030532;small nuclear ribonucleoprotein complex;7.6070448816272e-09!GO:0065002;intracellular protein transport across a membrane;7.70511807345967e-09!GO:0051188;cofactor biosynthetic process;8.84778478652515e-09!GO:0009259;ribonucleotide metabolic process;9.19890013818125e-09!GO:0016740;transferase activity;9.96605578776308e-09!GO:0006163;purine nucleotide metabolic process;1.16430318934955e-08!GO:0008219;cell death;1.6904629962937e-08!GO:0016265;death;1.6904629962937e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.95166738253167e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.95166738253167e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.95166738253167e-08!GO:0005643;nuclear pore;2.36503910717186e-08!GO:0017038;protein import;2.47373224833374e-08!GO:0042623;ATPase activity, coupled;2.78271800136425e-08!GO:0009150;purine ribonucleotide metabolic process;3.34443172699203e-08!GO:0016192;vesicle-mediated transport;3.61485261698885e-08!GO:0006364;rRNA processing;3.76582939335407e-08!GO:0006413;translational initiation;4.09605009384382e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.35523969898523e-08!GO:0006164;purine nucleotide biosynthetic process;5.18012876562891e-08!GO:0016887;ATPase activity;5.55357343411072e-08!GO:0016491;oxidoreductase activity;5.9633967380767e-08!GO:0016568;chromatin modification;6.14131850639912e-08!GO:0048523;negative regulation of cellular process;6.1632880079794e-08!GO:0043038;amino acid activation;6.8197423916715e-08!GO:0006418;tRNA aminoacylation for protein translation;6.8197423916715e-08!GO:0043039;tRNA aminoacylation;6.8197423916715e-08!GO:0006446;regulation of translational initiation;8.19878042930606e-08!GO:0009260;ribonucleotide biosynthetic process;8.41165346740177e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;8.43260093349156e-08!GO:0016072;rRNA metabolic process;9.67547927597953e-08!GO:0009060;aerobic respiration;9.79819121074961e-08!GO:0015630;microtubule cytoskeleton;1.09444495587289e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.47389773467586e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.65980825433303e-07!GO:0007005;mitochondrion organization and biogenesis;1.69682967371208e-07!GO:0008565;protein transporter activity;2.01802803539413e-07!GO:0046930;pore complex;2.1413097531285e-07!GO:0006461;protein complex assembly;2.1413097531285e-07!GO:0050794;regulation of cellular process;2.14762961397866e-07!GO:0008639;small protein conjugating enzyme activity;2.20519900829708e-07!GO:0051329;interphase of mitotic cell cycle;2.20519900829708e-07!GO:0005667;transcription factor complex;2.55176098231951e-07!GO:0009199;ribonucleoside triphosphate metabolic process;3.09469704851265e-07!GO:0009141;nucleoside triphosphate metabolic process;3.36467876551261e-07!GO:0016607;nuclear speck;3.43368694553379e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.39420789879026e-07!GO:0016779;nucleotidyltransferase activity;4.39982567926898e-07!GO:0004842;ubiquitin-protein ligase activity;5.19179120335255e-07!GO:0009056;catabolic process;6.11693132816921e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.52128823824103e-07!GO:0009144;purine nucleoside triphosphate metabolic process;6.52128823824103e-07!GO:0004386;helicase activity;6.58112805269175e-07!GO:0045333;cellular respiration;7.47109771049833e-07!GO:0019787;small conjugating protein ligase activity;8.2366264416233e-07!GO:0051325;interphase;9.02431419007942e-07!GO:0009117;nucleotide metabolic process;9.3844669855759e-07!GO:0003697;single-stranded DNA binding;9.73204286937694e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.10064797961329e-06!GO:0050657;nucleic acid transport;1.2063930142733e-06!GO:0051236;establishment of RNA localization;1.2063930142733e-06!GO:0050658;RNA transport;1.2063930142733e-06!GO:0006403;RNA localization;1.21948390148719e-06!GO:0048519;negative regulation of biological process;1.6271522936166e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.8405347872666e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.8405347872666e-06!GO:0005762;mitochondrial large ribosomal subunit;1.88939935934105e-06!GO:0000315;organellar large ribosomal subunit;1.88939935934105e-06!GO:0030120;vesicle coat;1.88939935934105e-06!GO:0030662;coated vesicle membrane;1.88939935934105e-06!GO:0006888;ER to Golgi vesicle-mediated transport;2.04393792710072e-06!GO:0003924;GTPase activity;2.15062004939039e-06!GO:0006099;tricarboxylic acid cycle;2.15062004939039e-06!GO:0046356;acetyl-CoA catabolic process;2.15062004939039e-06!GO:0003713;transcription coactivator activity;2.38837967194473e-06!GO:0016563;transcription activator activity;2.46769468417784e-06!GO:0015986;ATP synthesis coupled proton transport;2.48688450398764e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.48688450398764e-06!GO:0042981;regulation of apoptosis;2.58597276930688e-06!GO:0016853;isomerase activity;2.6048971961911e-06!GO:0006091;generation of precursor metabolites and energy;2.83099305091426e-06!GO:0003899;DNA-directed RNA polymerase activity;2.88716843811201e-06!GO:0009108;coenzyme biosynthetic process;2.92178243847455e-06!GO:0016881;acid-amino acid ligase activity;2.95416223372873e-06!GO:0005788;endoplasmic reticulum lumen;2.98296496563206e-06!GO:0043067;regulation of programmed cell death;3.19997869321135e-06!GO:0008026;ATP-dependent helicase activity;3.33329014655847e-06!GO:0006084;acetyl-CoA metabolic process;3.69051453674265e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.76718854126531e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.76718854126531e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.78531525576231e-06!GO:0046034;ATP metabolic process;4.14138939652901e-06!GO:0045259;proton-transporting ATP synthase complex;4.98353771430955e-06!GO:0048475;coated membrane;4.98770338068779e-06!GO:0030117;membrane coat;4.98770338068779e-06!GO:0051187;cofactor catabolic process;5.8792177413779e-06!GO:0031324;negative regulation of cellular metabolic process;6.813990020415e-06!GO:0008654;phospholipid biosynthetic process;7.08608300021792e-06!GO:0019829;cation-transporting ATPase activity;7.57434394565131e-06!GO:0009109;coenzyme catabolic process;8.79586653426814e-06!GO:0044431;Golgi apparatus part;1.09710301832076e-05!GO:0000786;nucleosome;1.09710301832076e-05!GO:0045786;negative regulation of progression through cell cycle;1.09710301832076e-05!GO:0051246;regulation of protein metabolic process;1.13174086584539e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.22620470146455e-05!GO:0000245;spliceosome assembly;1.34161106851304e-05!GO:0051170;nuclear import;1.52244500957777e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.65905627279966e-05!GO:0005813;centrosome;1.93926319643581e-05!GO:0016787;hydrolase activity;2.01054119474047e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.129619982504e-05!GO:0032446;protein modification by small protein conjugation;2.20848099497106e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;2.25540728803812e-05!GO:0005768;endosome;2.26703930506016e-05!GO:0045454;cell redox homeostasis;2.30925849228618e-05!GO:0006754;ATP biosynthetic process;2.31287014641911e-05!GO:0006753;nucleoside phosphate metabolic process;2.31287014641911e-05!GO:0006606;protein import into nucleus;2.40242636028676e-05!GO:0043566;structure-specific DNA binding;2.47764893163921e-05!GO:0016564;transcription repressor activity;2.63838777960227e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.69701413556148e-05!GO:0016859;cis-trans isomerase activity;2.82631190542286e-05!GO:0016567;protein ubiquitination;2.83527351090439e-05!GO:0005839;proteasome core complex (sensu Eukaryota);3.03438747627576e-05!GO:0006261;DNA-dependent DNA replication;3.07991442993839e-05!GO:0006793;phosphorus metabolic process;3.45980540529754e-05!GO:0006796;phosphate metabolic process;3.45980540529754e-05!GO:0051028;mRNA transport;3.50878987022109e-05!GO:0006916;anti-apoptosis;3.59946042711944e-05!GO:0005815;microtubule organizing center;3.60923003702736e-05!GO:0005819;spindle;3.76880871520055e-05!GO:0031252;leading edge;3.886702056087e-05!GO:0044440;endosomal part;4.68547635794248e-05!GO:0010008;endosome membrane;4.68547635794248e-05!GO:0043069;negative regulation of programmed cell death;5.24250511579229e-05!GO:0006752;group transfer coenzyme metabolic process;6.05725171781289e-05!GO:0050789;regulation of biological process;6.16699229128662e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.58434999682163e-05!GO:0003714;transcription corepressor activity;6.63695488209773e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.67847403659285e-05!GO:0005905;coated pit;6.83213599138647e-05!GO:0043066;negative regulation of apoptosis;6.85037527817753e-05!GO:0000314;organellar small ribosomal subunit;7.91160686333466e-05!GO:0005763;mitochondrial small ribosomal subunit;7.91160686333466e-05!GO:0009892;negative regulation of metabolic process;8.02681027828321e-05!GO:0051427;hormone receptor binding;8.89884290359659e-05!GO:0030867;rough endoplasmic reticulum membrane;9.16934560171766e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000100005745654312!GO:0008610;lipid biosynthetic process;0.000111592453390976!GO:0016023;cytoplasmic membrane-bound vesicle;0.000117383764240413!GO:0019867;outer membrane;0.000119123617748622!GO:0043623;cellular protein complex assembly;0.000125295832041817!GO:0016481;negative regulation of transcription;0.000126109510967325!GO:0000775;chromosome, pericentric region;0.000132120543017579!GO:0005657;replication fork;0.00013279763400027!GO:0044262;cellular carbohydrate metabolic process;0.000134128902949991!GO:0000151;ubiquitin ligase complex;0.00015257085157489!GO:0031968;organelle outer membrane;0.000157204332222269!GO:0015980;energy derivation by oxidation of organic compounds;0.000157204332222269!GO:0019899;enzyme binding;0.000157204332222269!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000165313388708166!GO:0000139;Golgi membrane;0.000167049649677215!GO:0008361;regulation of cell size;0.000168867906319484!GO:0035257;nuclear hormone receptor binding;0.000172883980131004!GO:0031988;membrane-bound vesicle;0.000177776632798267!GO:0016049;cell growth;0.00019501726610769!GO:0004298;threonine endopeptidase activity;0.000201756005413326!GO:0005770;late endosome;0.000205727287003848!GO:0005773;vacuole;0.000206328414385366!GO:0005791;rough endoplasmic reticulum;0.00021542278480342!GO:0016310;phosphorylation;0.000215588002283796!GO:0008094;DNA-dependent ATPase activity;0.000219721910187819!GO:0016126;sterol biosynthetic process;0.000219896365767912!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000222512641330232!GO:0046474;glycerophospholipid biosynthetic process;0.000232019071128057!GO:0006626;protein targeting to mitochondrion;0.00023305670418645!GO:0030036;actin cytoskeleton organization and biogenesis;0.000240120514334088!GO:0005798;Golgi-associated vesicle;0.000250621029387733!GO:0033116;ER-Golgi intermediate compartment membrane;0.00029800025156163!GO:0007051;spindle organization and biogenesis;0.000329993996286794!GO:0000075;cell cycle checkpoint;0.000349421377375465!GO:0043681;protein import into mitochondrion;0.000350346374522955!GO:0007010;cytoskeleton organization and biogenesis;0.000367497179723397!GO:0005741;mitochondrial outer membrane;0.000411132335030714!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000441427338327408!GO:0003724;RNA helicase activity;0.000462996479261156!GO:0006613;cotranslational protein targeting to membrane;0.000466135706748688!GO:0006839;mitochondrial transport;0.000476072979576912!GO:0005525;GTP binding;0.000520570473508439!GO:0008250;oligosaccharyl transferase complex;0.000539354053374296!GO:0008033;tRNA processing;0.000540518156911863!GO:0006082;organic acid metabolic process;0.000564284336659355!GO:0043021;ribonucleoprotein binding;0.000603576157614097!GO:0019752;carboxylic acid metabolic process;0.000657886254923634!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00068495094009119!GO:0000323;lytic vacuole;0.000724875872475531!GO:0005764;lysosome;0.000724875872475531!GO:0005048;signal sequence binding;0.000730859370663379!GO:0009165;nucleotide biosynthetic process;0.000758908695003114!GO:0030176;integral to endoplasmic reticulum membrane;0.000771704445011526!GO:0032508;DNA duplex unwinding;0.000784060474873509!GO:0032392;DNA geometric change;0.000784060474873509!GO:0003684;damaged DNA binding;0.00079576653234853!GO:0019843;rRNA binding;0.000906094260139132!GO:0031410;cytoplasmic vesicle;0.000937709489831548!GO:0051920;peroxiredoxin activity;0.000948851299690079!GO:0001558;regulation of cell growth;0.000984804047448352!GO:0051789;response to protein stimulus;0.000991891398655196!GO:0006986;response to unfolded protein;0.000991891398655196!GO:0019222;regulation of metabolic process;0.0010286540727849!GO:0003682;chromatin binding;0.00107351904518286!GO:0031982;vesicle;0.00107563345777079!GO:0030880;RNA polymerase complex;0.00116761007425172!GO:0005769;early endosome;0.0011854969843788!GO:0048522;positive regulation of cellular process;0.0011854969843788!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00119724549363774!GO:0043488;regulation of mRNA stability;0.00120025646876529!GO:0043487;regulation of RNA stability;0.00120025646876529!GO:0046467;membrane lipid biosynthetic process;0.00120885542569813!GO:0051168;nuclear export;0.00127808338758993!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00128628071253425!GO:0007006;mitochondrial membrane organization and biogenesis;0.00130953111903651!GO:0006695;cholesterol biosynthetic process;0.00131192958873069!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00131427576735606!GO:0030133;transport vesicle;0.0013245271032744!GO:0051252;regulation of RNA metabolic process;0.00132773699276602!GO:0018196;peptidyl-asparagine modification;0.00135776289558149!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00135776289558149!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00137259968800868!GO:0045941;positive regulation of transcription;0.00139830515281485!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0014217476712364!GO:0006268;DNA unwinding during replication;0.00152800759425665!GO:0006402;mRNA catabolic process;0.0015900069862973!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00164800417260201!GO:0006414;translational elongation;0.00166914598793098!GO:0005874;microtubule;0.00167014928508921!GO:0044452;nucleolar part;0.00170173821718517!GO:0043284;biopolymer biosynthetic process;0.00174787825007834!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00181526185027749!GO:0030132;clathrin coat of coated pit;0.00185026744350582!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00188437262712161!GO:0006383;transcription from RNA polymerase III promoter;0.001900354164492!GO:0030029;actin filament-based process;0.0019619157059005!GO:0005885;Arp2/3 protein complex;0.0019735528252672!GO:0006778;porphyrin metabolic process;0.00197805426600808!GO:0033013;tetrapyrrole metabolic process;0.00197805426600808!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0020281585425475!GO:0005684;U2-dependent spliceosome;0.002090942124464!GO:0065009;regulation of a molecular function;0.00216749036609472!GO:0045893;positive regulation of transcription, DNA-dependent;0.00230209625419665!GO:0045892;negative regulation of transcription, DNA-dependent;0.0023505191931996!GO:0046489;phosphoinositide biosynthetic process;0.00236840025784126!GO:0008632;apoptotic program;0.00237967509236045!GO:0003678;DNA helicase activity;0.00238809232980958!GO:0006979;response to oxidative stress;0.00257431193452984!GO:0042802;identical protein binding;0.00260235141997964!GO:0006401;RNA catabolic process;0.00266575803992815!GO:0004576;oligosaccharyl transferase activity;0.00271278085146162!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00273007869675275!GO:0000428;DNA-directed RNA polymerase complex;0.00273007869675275!GO:0030027;lamellipodium;0.00273007869675275!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00286782878851714!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00286782878851714!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00286782878851714!GO:0007088;regulation of mitosis;0.00295662415848902!GO:0000082;G1/S transition of mitotic cell cycle;0.00313147583529209!GO:0016741;transferase activity, transferring one-carbon groups;0.00329905901857115!GO:0008186;RNA-dependent ATPase activity;0.00333432066632316!GO:0006779;porphyrin biosynthetic process;0.00333432066632316!GO:0033014;tetrapyrrole biosynthetic process;0.00333432066632316!GO:0006520;amino acid metabolic process;0.00334461793516518!GO:0032561;guanyl ribonucleotide binding;0.00339713690869541!GO:0019001;guanyl nucleotide binding;0.00339713690869541!GO:0006595;polyamine metabolic process;0.00378690815582142!GO:0006740;NADPH regeneration;0.00397830789053148!GO:0006098;pentose-phosphate shunt;0.00397830789053148!GO:0008168;methyltransferase activity;0.00407036992685862!GO:0050662;coenzyme binding;0.00419113036995236!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00421228326728025!GO:0015002;heme-copper terminal oxidase activity;0.00421228326728025!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00421228326728025!GO:0004129;cytochrome-c oxidase activity;0.00421228326728025!GO:0031072;heat shock protein binding;0.00434841331847805!GO:0017166;vinculin binding;0.00435467899071239!GO:0030118;clathrin coat;0.00465948945425243!GO:0016044;membrane organization and biogenesis;0.00467716496723069!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00486791994818001!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00486791994818001!GO:0040029;regulation of gene expression, epigenetic;0.00493112870055123!GO:0046483;heterocycle metabolic process;0.00499964409649322!GO:0000059;protein import into nucleus, docking;0.00502236606143725!GO:0030658;transport vesicle membrane;0.00503599449623657!GO:0007040;lysosome organization and biogenesis;0.00550247203207639!GO:0006289;nucleotide-excision repair;0.00589343038563694!GO:0008652;amino acid biosynthetic process;0.00590716180064938!GO:0051540;metal cluster binding;0.00614595608400362!GO:0051536;iron-sulfur cluster binding;0.00614595608400362!GO:0006220;pyrimidine nucleotide metabolic process;0.00634827162664333!GO:0042168;heme metabolic process;0.00634827162664333!GO:0006612;protein targeting to membrane;0.00634827162664333!GO:0005774;vacuolar membrane;0.00636857095781755!GO:0003729;mRNA binding;0.00650224596684391!GO:0051087;chaperone binding;0.00661016526053204!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00667272671813066!GO:0000096;sulfur amino acid metabolic process;0.00731535925207901!GO:0007346;regulation of progression through mitotic cell cycle;0.00737058628299628!GO:0051348;negative regulation of transferase activity;0.00753012367873167!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00778917997793738!GO:0006352;transcription initiation;0.00791138374348298!GO:0004004;ATP-dependent RNA helicase activity;0.00791138374348298!GO:0030119;AP-type membrane coat adaptor complex;0.00791330722837071!GO:0006284;base-excision repair;0.00791748291088281!GO:0000084;S phase of mitotic cell cycle;0.00795081416640054!GO:0019206;nucleoside kinase activity;0.00800318454236503!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00803580791908998!GO:0033673;negative regulation of kinase activity;0.00808916191064562!GO:0006469;negative regulation of protein kinase activity;0.00808916191064562!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00812239784251631!GO:0007264;small GTPase mediated signal transduction;0.00818302925138043!GO:0006007;glucose catabolic process;0.00834395179360449!GO:0007033;vacuole organization and biogenesis;0.00834395179360449!GO:0016272;prefoldin complex;0.00853808386726136!GO:0007050;cell cycle arrest;0.00863441072469998!GO:0048471;perinuclear region of cytoplasm;0.00897398658216669!GO:0051539;4 iron, 4 sulfur cluster binding;0.00899482383744913!GO:0007243;protein kinase cascade;0.00905733996095799!GO:0008047;enzyme activator activity;0.00907140135734516!GO:0006338;chromatin remodeling;0.00908824019420827!GO:0030145;manganese ion binding;0.00945931427102212!GO:0006118;electron transport;0.00961327321512127!GO:0016363;nuclear matrix;0.00965151262877861!GO:0000049;tRNA binding;0.00969152215131151!GO:0030663;COPI coated vesicle membrane;0.00978512108532217!GO:0030126;COPI vesicle coat;0.00978512108532217!GO:0035258;steroid hormone receptor binding;0.0100377718552663!GO:0051287;NAD binding;0.0100476244754001!GO:0003711;transcription elongation regulator activity;0.0101061838119876!GO:0006405;RNA export from nucleus;0.0101427509641729!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0101648838162374!GO:0015631;tubulin binding;0.0105236810789945!GO:0065007;biological regulation;0.0105663970340935!GO:0006783;heme biosynthetic process;0.0105982305770383!GO:0031902;late endosome membrane;0.010673504512728!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0109092569702347!GO:0015399;primary active transmembrane transporter activity;0.0109092569702347!GO:0030137;COPI-coated vesicle;0.0109718171819912!GO:0009303;rRNA transcription;0.0111074523544835!GO:0005096;GTPase activator activity;0.0112989972695402!GO:0030131;clathrin adaptor complex;0.0115874049725004!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0116255643189497!GO:0030521;androgen receptor signaling pathway;0.0120387356290531!GO:0008092;cytoskeletal protein binding;0.0121706969063413!GO:0040008;regulation of growth;0.0121706969063413!GO:0030134;ER to Golgi transport vesicle;0.0123795975339808!GO:0006950;response to stress;0.0124334271169246!GO:0048037;cofactor binding;0.012595714560906!GO:0030660;Golgi-associated vesicle membrane;0.0126439770456533!GO:0000228;nuclear chromosome;0.0126822129338072!GO:0008139;nuclear localization sequence binding;0.0128577169900357!GO:0005996;monosaccharide metabolic process;0.0137404555760093!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0140590840664696!GO:0051101;regulation of DNA binding;0.0140684105936267!GO:0019318;hexose metabolic process;0.0141142715126274!GO:0005765;lysosomal membrane;0.0146215677530015!GO:0044437;vacuolar part;0.0146237814428864!GO:0006739;NADP metabolic process;0.0146798181326064!GO:0042393;histone binding;0.0146798181326064!GO:0048487;beta-tubulin binding;0.0147649876864932!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.014817310822226!GO:0030041;actin filament polymerization;0.0148483052764754!GO:0004177;aminopeptidase activity;0.0150704510555301!GO:0016860;intramolecular oxidoreductase activity;0.015460814766049!GO:0004674;protein serine/threonine kinase activity;0.015496117555211!GO:0004527;exonuclease activity;0.0159668319997009!GO:0005869;dynactin complex;0.0162887271366455!GO:0006302;double-strand break repair;0.0163400369156784!GO:0030125;clathrin vesicle coat;0.0165123721791263!GO:0030665;clathrin coated vesicle membrane;0.0165123721791263!GO:0031272;regulation of pseudopodium formation;0.0165123721791263!GO:0031269;pseudopodium formation;0.0165123721791263!GO:0031344;regulation of cell projection organization and biogenesis;0.0165123721791263!GO:0031268;pseudopodium organization and biogenesis;0.0165123721791263!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0165123721791263!GO:0031274;positive regulation of pseudopodium formation;0.0165123721791263!GO:0015992;proton transport;0.0165123721791263!GO:0008629;induction of apoptosis by intracellular signals;0.016545410192422!GO:0000792;heterochromatin;0.0169065047349592!GO:0000209;protein polyubiquitination;0.0169825205437122!GO:0007093;mitotic cell cycle checkpoint;0.0169849422129479!GO:0004518;nuclease activity;0.0179448619906176!GO:0005637;nuclear inner membrane;0.0179448619906176!GO:0006818;hydrogen transport;0.017978082527399!GO:0051320;S phase;0.0182594305030695!GO:0016125;sterol metabolic process;0.0184842670235967!GO:0001726;ruffle;0.0189026205017988!GO:0051098;regulation of binding;0.0191989788511608!GO:0006509;membrane protein ectodomain proteolysis;0.0191989788511608!GO:0033619;membrane protein proteolysis;0.0191989788511608!GO:0005100;Rho GTPase activator activity;0.0192296483636404!GO:0031124;mRNA 3'-end processing;0.0194159608258067!GO:0048468;cell development;0.0194615211495247!GO:0022415;viral reproductive process;0.0197062798941784!GO:0008286;insulin receptor signaling pathway;0.0201395805383024!GO:0000123;histone acetyltransferase complex;0.0207455307992165!GO:0016301;kinase activity;0.0208523550782532!GO:0046426;negative regulation of JAK-STAT cascade;0.0208643947514566!GO:0006650;glycerophospholipid metabolic process;0.021060783681845!GO:0016585;chromatin remodeling complex;0.0211663199935119!GO:0031529;ruffle organization and biogenesis;0.0211663199935119!GO:0045792;negative regulation of cell size;0.0211663199935119!GO:0048500;signal recognition particle;0.0211935280085316!GO:0006506;GPI anchor biosynthetic process;0.0219547293678835!GO:0009112;nucleobase metabolic process;0.0220179318179076!GO:0016407;acetyltransferase activity;0.022177165735432!GO:0000910;cytokinesis;0.0228028567461048!GO:0043414;biopolymer methylation;0.0231521959276966!GO:0048518;positive regulation of biological process;0.0234246468717313!GO:0030127;COPII vesicle coat;0.0234246468717313!GO:0012507;ER to Golgi transport vesicle membrane;0.0234246468717313!GO:0006790;sulfur metabolic process;0.0234246468717313!GO:0006275;regulation of DNA replication;0.0240917851946469!GO:0030308;negative regulation of cell growth;0.0241633958374031!GO:0043596;nuclear replication fork;0.024393460063376!GO:0006066;alcohol metabolic process;0.0245183548262601!GO:0008538;proteasome activator activity;0.0250954438054303!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0252250841786052!GO:0006458;'de novo' protein folding;0.0255936760010379!GO:0051084;'de novo' posttranslational protein folding;0.0255936760010379!GO:0005758;mitochondrial intermembrane space;0.0256013703652229!GO:0008312;7S RNA binding;0.0258156066791008!GO:0015036;disulfide oxidoreductase activity;0.0260276001730491!GO:0005862;muscle thin filament tropomyosin;0.0260588963492113!GO:0030508;thiol-disulfide exchange intermediate activity;0.0261360989649897!GO:0007021;tubulin folding;0.0265263652143463!GO:0008637;apoptotic mitochondrial changes;0.0267104215881596!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0268927128835308!GO:0006310;DNA recombination;0.0270341295351306!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0270782194145471!GO:0005832;chaperonin-containing T-complex;0.0270995393958576!GO:0043189;H4/H2A histone acetyltransferase complex;0.0271190656701385!GO:0031323;regulation of cellular metabolic process;0.0277166991820892!GO:0007052;mitotic spindle organization and biogenesis;0.0279998084895246!GO:0008154;actin polymerization and/or depolymerization;0.0280382885920431!GO:0009116;nucleoside metabolic process;0.0282409622230221!GO:0022890;inorganic cation transmembrane transporter activity;0.0284665459711204!GO:0033559;unsaturated fatty acid metabolic process;0.0286114803147821!GO:0006636;unsaturated fatty acid biosynthetic process;0.0286114803147821!GO:0006497;protein amino acid lipidation;0.0286114803147821!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0286171622628339!GO:0050790;regulation of catalytic activity;0.0287781849858447!GO:0006611;protein export from nucleus;0.0290959083635102!GO:0035035;histone acetyltransferase binding;0.0290959083635102!GO:0006733;oxidoreduction coenzyme metabolic process;0.029181751445881!GO:0006807;nitrogen compound metabolic process;0.0291998111681992!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0292396948367381!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0292396948367381!GO:0051052;regulation of DNA metabolic process;0.0293120116315506!GO:0030659;cytoplasmic vesicle membrane;0.0298159320588501!GO:0042770;DNA damage response, signal transduction;0.0300799733020386!GO:0030433;ER-associated protein catabolic process;0.0303210064088192!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0303210064088192!GO:0031543;peptidyl-proline dioxygenase activity;0.030507736448114!GO:0000339;RNA cap binding;0.0315238924864933!GO:0006350;transcription;0.0317497120377793!GO:0003746;translation elongation factor activity;0.031910991307525!GO:0007265;Ras protein signal transduction;0.0322307344545586!GO:0000922;spindle pole;0.0323617704797093!GO:0004003;ATP-dependent DNA helicase activity;0.0325960050671226!GO:0019798;procollagen-proline dioxygenase activity;0.0326170446906313!GO:0003756;protein disulfide isomerase activity;0.0332387587504538!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0332387587504538!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0336587044504221!GO:0016584;nucleosome positioning;0.034565998824443!GO:0022408;negative regulation of cell-cell adhesion;0.035424289318439!GO:0006505;GPI anchor metabolic process;0.0355621398685919!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0355621398685919!GO:0043022;ribosome binding;0.0355621398685919!GO:0044454;nuclear chromosome part;0.0372377552722439!GO:0006891;intra-Golgi vesicle-mediated transport;0.0376408864006203!GO:0006519;amino acid and derivative metabolic process;0.0379680578274259!GO:0009451;RNA modification;0.0380991859778797!GO:0035267;NuA4 histone acetyltransferase complex;0.0382431299878517!GO:0008213;protein amino acid alkylation;0.0394150604016856!GO:0006479;protein amino acid methylation;0.0394150604016856!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0394150604016856!GO:0050178;phenylpyruvate tautomerase activity;0.0396172223182317!GO:0003887;DNA-directed DNA polymerase activity;0.0399470708945367!GO:0009262;deoxyribonucleotide metabolic process;0.0399984275273278!GO:0043407;negative regulation of MAP kinase activity;0.0409364930066441!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0409921995326797!GO:0006730;one-carbon compound metabolic process;0.0409921995326797!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0412427117358804!GO:0045047;protein targeting to ER;0.0412427117358804!GO:0005652;nuclear lamina;0.0415886525325008!GO:0030911;TPR domain binding;0.0421306440201926!GO:0001953;negative regulation of cell-matrix adhesion;0.0426495469891932!GO:0000781;chromosome, telomeric region;0.0428231710244948!GO:0000776;kinetochore;0.0443599920758335!GO:0005092;GDP-dissociation inhibitor activity;0.0445346683840916!GO:0031970;organelle envelope lumen;0.0447040434444366!GO:0031371;ubiquitin conjugating enzyme complex;0.0448860777924914!GO:0031418;L-ascorbic acid binding;0.0451248503419342!GO:0007017;microtubule-based process;0.045252630968044!GO:0016791;phosphoric monoester hydrolase activity;0.04575381449725!GO:0006897;endocytosis;0.04575381449725!GO:0010324;membrane invagination;0.04575381449725!GO:0006984;ER-nuclear signaling pathway;0.0459472823693943!GO:0043086;negative regulation of catalytic activity;0.0461021395913135!GO:0030833;regulation of actin filament polymerization;0.0461361426795591!GO:0032259;methylation;0.0463750745577058!GO:0031901;early endosome membrane;0.0468967627553255!GO:0000790;nuclear chromatin;0.0469144112061668!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0470352886194767!GO:0008180;signalosome;0.0470613257033471!GO:0051128;regulation of cellular component organization and biogenesis;0.0475251983616023!GO:0051085;chaperone cofactor-dependent protein folding;0.047728180648857!GO:0016417;S-acyltransferase activity;0.0478425297134351!GO:0003955;NAD(P)H dehydrogenase (quinone) activity;0.0480963401658805!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0486841557219196!GO:0006541;glutamine metabolic process;0.0490661838220126!GO:0006354;RNA elongation;0.0491244913028454!GO:0009308;amine metabolic process;0.0491763980017911 | |||
|sample_id=11532 | |sample_id=11532 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=eye | |sample_tissue=eye | ||
|top_motifs=GTF2A1,2:1.38882320243;ZNF238:1.34527405697;LHX3,4:1.2504057039;TAL1_TCF{3,4,12}:1.21151688207;GZF1:1.15075632372;EBF1:1.1391167126;ZNF423:1.13283001149;XCPE1{core}:1.06852695814;PBX1:1.02033691633;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.01337695445;TFDP1:0.953744300978;HOX{A5,B5}:0.943501109434;NFY{A,B,C}:0.92971338831;RXR{A,B,G}:0.874127566242;GFI1:0.86701072899;LEF1_TCF7_TCF7L1,2:0.817267725295;CRX:0.803738207583;HES1:0.764047101825;HAND1,2:0.751404852857;NKX2-2,8:0.737306194585;HOX{A6,A7,B6,B7}:0.710685592513;E2F1..5:0.700413341995;bHLH_family:0.676734268355;TLX1..3_NFIC{dimer}:0.653510282245;ZIC1..3:0.643940035355;TFCP2:0.632306926383;TOPORS:0.600636091925;AR:0.588207436262;POU5F1:0.573167694585;TFAP4:0.552676691986;POU2F1..3:0.545156481729;GFI1B:0.5338848676;NR3C1:0.524044307141;NR5A1,2:0.514941693394;XBP1:0.51464529951;ZNF148:0.501433223509;SP1:0.487982621743;TEAD1:0.457297140684;ESR1:0.446358289984;RXRA_VDR{dimer}:0.436695761366;NFE2L2:0.401215543695;GTF2I:0.398049321437;SOX{8,9,10}:0.392642061495;ZNF143:0.392351624643;POU1F1:0.374085313082;PAX8:0.358895839282;MYBL2:0.357505513389;TFAP2B:0.328878306407;MYB:0.324181957094;PATZ1:0.321570881754;NR1H4:0.317521490619;MTF1:0.316501805807;HIC1:0.306136663414;RREB1:0.30371614737;TBP:0.288266544141;PAX1,9:0.287336028513;STAT5{A,B}:0.272776767617;PAX5:0.270790596015;SOX5:0.250095217119;KLF4:0.243333937847;NANOG:0.24211663846;ADNP_IRX_SIX_ZHX:0.241619480646;PRRX1,2:0.227661210199;GLI1..3:0.196195612443;IKZF1:0.181776772405;HNF4A_NR2F1,2:0.176961334431;TP53:0.171599240247;BACH2:0.164006349651;NKX2-3_NKX2-5:0.15288618079;SOX17:0.137962411734;FOX{I1,J2}:0.126243327483;NFE2L1:0.123495573321;NKX3-1:0.121625296515;TBX4,5:0.117966508995;HNF1A:0.108164546315;NFE2:0.106110433849;ZBTB6:0.0985080495856;T:0.0900876264156;SPZ1:0.0822875699474;CEBPA,B_DDIT3:0.0815814954401;PDX1:0.0752229018601;TFAP2{A,C}:0.0681317453945;FOS_FOS{B,L1}_JUN{B,D}:0.0677925659128;HLF:0.0606484230748;FOSL2:0.047260259284;PAX3,7:0.0372179326302;FOXA2:0.0266397023883;SRF:0.0258957117944;EN1,2:0.0192778615459;MZF1:0.00977835770647;ESRRA:0.00460330484418;ONECUT1,2:0.000357656996504;NKX6-1,2:-0.00855920006178;GATA6:-0.0086862505275;EP300:-0.0114499874664;TEF:-0.0252511208784;YY1:-0.0329802507281;ALX4:-0.0660641220169;NRF1:-0.0799512000249;RFX1:-0.0926256554765;EGR1..3:-0.093211413431;FOXQ1:-0.0942206656422;BREu{core}:-0.114619346824;MAZ:-0.117562495035;NFATC1..3:-0.120526622033;REST:-0.120772727695;CUX2:-0.122243007854;NR6A1:-0.125826734188;MEF2{A,B,C,D}:-0.129131321601;FOXD3:-0.131353276721;MED-1{core}:-0.155915655043;OCT4_SOX2{dimer}:-0.160102232352;RUNX1..3:-0.164142152312;SOX2:-0.196772538236;MYOD1:-0.200766452027;STAT2,4,6:-0.20964142673;HOXA9_MEIS1:-0.214346261674;FOX{F1,F2,J1}:-0.226267162207;CDC5L:-0.23338539961;HBP1_HMGB_SSRP1_UBTF:-0.255642413016;LMO2:-0.256120397937;ELK1,4_GABP{A,B1}:-0.261062009592;NHLH1,2:-0.270687383705;RORA:-0.27997265421;JUN:-0.280334389506;AIRE:-0.290743272162;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.312216704199;GCM1,2:-0.315914279025;NANOG{mouse}:-0.364885897358;PITX1..3:-0.366907266867;ETS1,2:-0.375586410579;UFEwm:-0.382691601676;VSX1,2:-0.383204581557;PAX6:-0.389311400326;AHR_ARNT_ARNT2:-0.403095423281;POU3F1..4:-0.403123256142;NFKB1_REL_RELA:-0.407910897629;HSF1,2:-0.411058812546;ARID5B:-0.411424420816;ELF1,2,4:-0.427675258693;PAX4:-0.431335436989;SPIB:-0.451909202072;ZFP161:-0.458017084304;STAT1,3:-0.458857224507;ZNF384:-0.463782609179;ATF6:-0.479871558237;HMX1:-0.487640567022;SPI1:-0.519905470525;PRDM1:-0.526911766464;SNAI1..3:-0.535726711605;DBP:-0.539174469371;NFIL3:-0.53976022788;EVI1:-0.54384762508;MYFfamily:-0.548398241925;ZEB1:-0.579528832313;TGIF1:-0.596739816231;NFIX:-0.61872412671;FOXL1:-0.625239804138;CREB1:-0.654437090142;PPARG:-0.659687240716;FOXM1:-0.68254546969;HIF1A:-0.684170571934;ATF2:-0.685211551701;MTE{core}:-0.685513807514;FOXO1,3,4:-0.695770952828;POU6F1:-0.699123789535;ATF5_CREB3:-0.732707059088;GATA4:-0.73576636756;SMAD1..7,9:-0.737970488028;HOX{A4,D4}:-0.752303278338;DMAP1_NCOR{1,2}_SMARC:-0.760288442003;FOXP3:-0.788343060576;TLX2:-0.840395757565;PAX2:-0.845241049393;CDX1,2,4:-0.853337438027;IRF7:-0.856323388337;NKX3-2:-0.861401555776;IRF1,2:-0.867633061788;FOX{D1,D2}:-0.894508276236;MAFB:-0.894795615173;RFX2..5_RFXANK_RFXAP:-0.911660741525;BPTF:-0.927525751307;FOXP1:-0.957642636018;NKX2-1,4:-1.0010390671;ATF4:-1.00499458535;RBPJ:-1.29337568869;IKZF2:-1.36481733351;HMGA1,2:-1.38870228481;ZBTB16:-1.48057055005;SREBF1,2:-1.53566522964;ALX1:-1.54616013274;FOXN1:-1.64977651022 | |top_motifs=GTF2A1,2:1.38882320243;ZNF238:1.34527405697;LHX3,4:1.2504057039;TAL1_TCF{3,4,12}:1.21151688207;GZF1:1.15075632372;EBF1:1.1391167126;ZNF423:1.13283001149;XCPE1{core}:1.06852695814;PBX1:1.02033691633;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.01337695445;TFDP1:0.953744300978;HOX{A5,B5}:0.943501109434;NFY{A,B,C}:0.92971338831;RXR{A,B,G}:0.874127566242;GFI1:0.86701072899;LEF1_TCF7_TCF7L1,2:0.817267725295;CRX:0.803738207583;HES1:0.764047101825;HAND1,2:0.751404852857;NKX2-2,8:0.737306194585;HOX{A6,A7,B6,B7}:0.710685592513;E2F1..5:0.700413341995;bHLH_family:0.676734268355;TLX1..3_NFIC{dimer}:0.653510282245;ZIC1..3:0.643940035355;TFCP2:0.632306926383;TOPORS:0.600636091925;AR:0.588207436262;POU5F1:0.573167694585;TFAP4:0.552676691986;POU2F1..3:0.545156481729;GFI1B:0.5338848676;NR3C1:0.524044307141;NR5A1,2:0.514941693394;XBP1:0.51464529951;ZNF148:0.501433223509;SP1:0.487982621743;TEAD1:0.457297140684;ESR1:0.446358289984;RXRA_VDR{dimer}:0.436695761366;NFE2L2:0.401215543695;GTF2I:0.398049321437;SOX{8,9,10}:0.392642061495;ZNF143:0.392351624643;POU1F1:0.374085313082;PAX8:0.358895839282;MYBL2:0.357505513389;TFAP2B:0.328878306407;MYB:0.324181957094;PATZ1:0.321570881754;NR1H4:0.317521490619;MTF1:0.316501805807;HIC1:0.306136663414;RREB1:0.30371614737;TBP:0.288266544141;PAX1,9:0.287336028513;STAT5{A,B}:0.272776767617;PAX5:0.270790596015;SOX5:0.250095217119;KLF4:0.243333937847;NANOG:0.24211663846;ADNP_IRX_SIX_ZHX:0.241619480646;PRRX1,2:0.227661210199;GLI1..3:0.196195612443;IKZF1:0.181776772405;HNF4A_NR2F1,2:0.176961334431;TP53:0.171599240247;BACH2:0.164006349651;NKX2-3_NKX2-5:0.15288618079;SOX17:0.137962411734;FOX{I1,J2}:0.126243327483;NFE2L1:0.123495573321;NKX3-1:0.121625296515;TBX4,5:0.117966508995;HNF1A:0.108164546315;NFE2:0.106110433849;ZBTB6:0.0985080495856;T:0.0900876264156;SPZ1:0.0822875699474;CEBPA,B_DDIT3:0.0815814954401;PDX1:0.0752229018601;TFAP2{A,C}:0.0681317453945;FOS_FOS{B,L1}_JUN{B,D}:0.0677925659128;HLF:0.0606484230748;FOSL2:0.047260259284;PAX3,7:0.0372179326302;FOXA2:0.0266397023883;SRF:0.0258957117944;EN1,2:0.0192778615459;MZF1:0.00977835770647;ESRRA:0.00460330484418;ONECUT1,2:0.000357656996504;NKX6-1,2:-0.00855920006178;GATA6:-0.0086862505275;EP300:-0.0114499874664;TEF:-0.0252511208784;YY1:-0.0329802507281;ALX4:-0.0660641220169;NRF1:-0.0799512000249;RFX1:-0.0926256554765;EGR1..3:-0.093211413431;FOXQ1:-0.0942206656422;BREu{core}:-0.114619346824;MAZ:-0.117562495035;NFATC1..3:-0.120526622033;REST:-0.120772727695;CUX2:-0.122243007854;NR6A1:-0.125826734188;MEF2{A,B,C,D}:-0.129131321601;FOXD3:-0.131353276721;MED-1{core}:-0.155915655043;OCT4_SOX2{dimer}:-0.160102232352;RUNX1..3:-0.164142152312;SOX2:-0.196772538236;MYOD1:-0.200766452027;STAT2,4,6:-0.20964142673;HOXA9_MEIS1:-0.214346261674;FOX{F1,F2,J1}:-0.226267162207;CDC5L:-0.23338539961;HBP1_HMGB_SSRP1_UBTF:-0.255642413016;LMO2:-0.256120397937;ELK1,4_GABP{A,B1}:-0.261062009592;NHLH1,2:-0.270687383705;RORA:-0.27997265421;JUN:-0.280334389506;AIRE:-0.290743272162;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.312216704199;GCM1,2:-0.315914279025;NANOG{mouse}:-0.364885897358;PITX1..3:-0.366907266867;ETS1,2:-0.375586410579;UFEwm:-0.382691601676;VSX1,2:-0.383204581557;PAX6:-0.389311400326;AHR_ARNT_ARNT2:-0.403095423281;POU3F1..4:-0.403123256142;NFKB1_REL_RELA:-0.407910897629;HSF1,2:-0.411058812546;ARID5B:-0.411424420816;ELF1,2,4:-0.427675258693;PAX4:-0.431335436989;SPIB:-0.451909202072;ZFP161:-0.458017084304;STAT1,3:-0.458857224507;ZNF384:-0.463782609179;ATF6:-0.479871558237;HMX1:-0.487640567022;SPI1:-0.519905470525;PRDM1:-0.526911766464;SNAI1..3:-0.535726711605;DBP:-0.539174469371;NFIL3:-0.53976022788;EVI1:-0.54384762508;MYFfamily:-0.548398241925;ZEB1:-0.579528832313;TGIF1:-0.596739816231;NFIX:-0.61872412671;FOXL1:-0.625239804138;CREB1:-0.654437090142;PPARG:-0.659687240716;FOXM1:-0.68254546969;HIF1A:-0.684170571934;ATF2:-0.685211551701;MTE{core}:-0.685513807514;FOXO1,3,4:-0.695770952828;POU6F1:-0.699123789535;ATF5_CREB3:-0.732707059088;GATA4:-0.73576636756;SMAD1..7,9:-0.737970488028;HOX{A4,D4}:-0.752303278338;DMAP1_NCOR{1,2}_SMARC:-0.760288442003;FOXP3:-0.788343060576;TLX2:-0.840395757565;PAX2:-0.845241049393;CDX1,2,4:-0.853337438027;IRF7:-0.856323388337;NKX3-2:-0.861401555776;IRF1,2:-0.867633061788;FOX{D1,D2}:-0.894508276236;MAFB:-0.894795615173;RFX2..5_RFXANK_RFXAP:-0.911660741525;BPTF:-0.927525751307;FOXP1:-0.957642636018;NKX2-1,4:-1.0010390671;ATF4:-1.00499458535;RBPJ:-1.29337568869;IKZF2:-1.36481733351;HMGA1,2:-1.38870228481;ZBTB16:-1.48057055005;SREBF1,2:-1.53566522964;ALX1:-1.54616013274;FOXN1:-1.64977651022 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11532-120A2;search_select_hide=table117:FF:11532-120A2 | |||
}} | }} | ||
Latest revision as of 18:07, 4 June 2020
| Name: | Trabecular Meshwork Cells, donor1 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11340 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11340
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11340
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.527 |
| 10 | 10 | 0.239 |
| 100 | 100 | 0.708 |
| 101 | 101 | 0.172 |
| 102 | 102 | 0.637 |
| 103 | 103 | 0.287 |
| 104 | 104 | 0.337 |
| 105 | 105 | 0.0283 |
| 106 | 106 | 0.838 |
| 107 | 107 | 0.441 |
| 108 | 108 | 0.571 |
| 109 | 109 | 0.105 |
| 11 | 11 | 0.228 |
| 110 | 110 | 0.097 |
| 111 | 111 | 0.361 |
| 112 | 112 | 0.347 |
| 113 | 113 | 0.643 |
| 114 | 114 | 0.244 |
| 115 | 115 | 0.982 |
| 116 | 116 | 0.361 |
| 117 | 117 | 0.977 |
| 118 | 118 | 0.755 |
| 119 | 119 | 0.508 |
| 12 | 12 | 0.566 |
| 120 | 120 | 0.48 |
| 121 | 121 | 0.309 |
| 122 | 122 | 0.833 |
| 123 | 123 | 0.0377 |
| 124 | 124 | 0.642 |
| 125 | 125 | 0.375 |
| 126 | 126 | 0.898 |
| 127 | 127 | 0.86 |
| 128 | 128 | 0.821 |
| 129 | 129 | 0.431 |
| 13 | 13 | 0.47 |
| 130 | 130 | 0.00712 |
| 131 | 131 | 0.83 |
| 132 | 132 | 0.206 |
| 133 | 133 | 0.0216 |
| 134 | 134 | 0.426 |
| 135 | 135 | 0.587 |
| 136 | 136 | 0.825 |
| 137 | 137 | 0.165 |
| 138 | 138 | 0.113 |
| 139 | 139 | 0.0393 |
| 14 | 14 | 0.924 |
| 140 | 140 | 0.255 |
| 141 | 141 | 0.357 |
| 142 | 142 | 0.568 |
| 143 | 143 | 0.633 |
| 144 | 144 | 0.551 |
| 145 | 145 | 0.386 |
| 146 | 146 | 0.00695 |
| 147 | 147 | 0.729 |
| 148 | 148 | 0.125 |
| 149 | 149 | 0.865 |
| 15 | 15 | 0.513 |
| 150 | 150 | 0.368 |
| 151 | 151 | 0.76 |
| 152 | 152 | 0.297 |
| 153 | 153 | 0.172 |
| 154 | 154 | 0.0436 |
| 155 | 155 | 0.215 |
| 156 | 156 | 0.388 |
| 157 | 157 | 0.425 |
| 158 | 158 | 0.15 |
| 159 | 159 | 0.969 |
| 16 | 16 | 0.888 |
| 160 | 160 | 0.0054 |
| 161 | 161 | 0.753 |
| 162 | 162 | 0.0376 |
| 163 | 163 | 0.437 |
| 164 | 164 | 0.371 |
| 165 | 165 | 0.0823 |
| 166 | 166 | 0.79 |
| 167 | 167 | 0.165 |
| 168 | 168 | 0.932 |
| 169 | 169 | 0.233 |
| 17 | 17 | 0.58 |
| 18 | 18 | 0.518 |
| 19 | 19 | 0.28 |
| 2 | 2 | 0.531 |
| 20 | 20 | 0.693 |
| 21 | 21 | 0.798 |
| 22 | 22 | 0.11 |
| 23 | 23 | 0.741 |
| 24 | 24 | 0.158 |
| 25 | 25 | 0.434 |
| 26 | 26 | 0.211 |
| 27 | 27 | 0.564 |
| 28 | 28 | 0.0574 |
| 29 | 29 | 0.565 |
| 3 | 3 | 0.647 |
| 30 | 30 | 0.0434 |
| 31 | 31 | 0.673 |
| 32 | 32 | 0.0207 |
| 33 | 33 | 0.592 |
| 34 | 34 | 0.104 |
| 35 | 35 | 0.34 |
| 36 | 36 | 0.781 |
| 37 | 37 | 0.823 |
| 38 | 38 | 0.542 |
| 39 | 39 | 0.51 |
| 4 | 4 | 0.341 |
| 40 | 40 | 0.0269 |
| 41 | 41 | 0.464 |
| 42 | 42 | 0.735 |
| 43 | 43 | 0.484 |
| 44 | 44 | 0.158 |
| 45 | 45 | 0.266 |
| 46 | 46 | 0.323 |
| 47 | 47 | 0.492 |
| 48 | 48 | 0.12 |
| 49 | 49 | 0.564 |
| 5 | 5 | 0.221 |
| 50 | 50 | 0.0516 |
| 51 | 51 | 0.457 |
| 52 | 52 | 0.688 |
| 53 | 53 | 0.444 |
| 54 | 54 | 0.489 |
| 55 | 55 | 0.657 |
| 56 | 56 | 0.235 |
| 57 | 57 | 0.696 |
| 58 | 58 | 0.0608 |
| 59 | 59 | 0.183 |
| 6 | 6 | 0.309 |
| 60 | 60 | 0.516 |
| 61 | 61 | 0.791 |
| 62 | 62 | 0.107 |
| 63 | 63 | 0.182 |
| 64 | 64 | 0.0603 |
| 65 | 65 | 0.178 |
| 66 | 66 | 0.0211 |
| 67 | 67 | 0.654 |
| 68 | 68 | 0.00512 |
| 69 | 69 | 0.0359 |
| 7 | 7 | 0.948 |
| 70 | 70 | 0.597 |
| 71 | 71 | 0.492 |
| 72 | 72 | 0.15 |
| 73 | 73 | 0.189 |
| 74 | 74 | 0.593 |
| 75 | 75 | 0.848 |
| 76 | 76 | 0.0999 |
| 77 | 77 | 0.178 |
| 78 | 78 | 0.369 |
| 79 | 79 | 0.628 |
| 8 | 8 | 0.0981 |
| 80 | 80 | 0.852 |
| 81 | 81 | 0.93 |
| 82 | 82 | 0.262 |
| 83 | 83 | 0.662 |
| 84 | 84 | 0.499 |
| 85 | 85 | 0.56 |
| 86 | 86 | 0.528 |
| 87 | 87 | 0.403 |
| 88 | 88 | 0.188 |
| 89 | 89 | 0.511 |
| 9 | 9 | 0.177 |
| 90 | 90 | 0.017 |
| 91 | 91 | 0.423 |
| 92 | 92 | 0.23 |
| 93 | 93 | 0.8 |
| 94 | 94 | 0.763 |
| 95 | 95 | 0.48 |
| 96 | 96 | 0.804 |
| 97 | 97 | 0.655 |
| 98 | 98 | 0.44 |
| 99 | 99 | 1.42904e-4 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11340
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0002367 (trabecular meshwork cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000970 (eye)
0000019 (camera-type eye)
0000033 (head)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000020 (sense organ)
0002203 (vasculature of eye)
0001768 (uvea)
0001032 (sensory system)
0002049 (vasculature)
0002200 (vasculature of head)
0006876 (vasculature of organ)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0005969 (reticulum trabeculare)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0004535 (cardiovascular system)
0002104 (visual system)
0001801 (anterior segment of eyeball)
0004456 (entire sense organ system)
0001456 (face)
0010230 (eyeball of camera-type eye)
0001009 (circulatory system)
0003956 (aqueous drainage system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000188 (human trabecular meshwork cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)
