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(Created page with "{{f5samples |id=FF:11690-122I7 |name=Lens Epithelial Cells, donor3 |sample_id=11690 |rna_tube_id=122I7 |rna_box=122 |rna_position=I7 |sample_cell_lot=N/A |sample_cell_...")
 
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{{f5samples
{{f5samples
|id=FF:11690-122I7
|DRA_sample_Accession=CAGE@SAMD00004687
|name=Lens Epithelial Cells, donor3
|accession_numbers=CAGE;DRX008321;DRR009193;DRZ000618;DRZ002003;DRZ011968;DRZ013353
|sample_id=11690
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000970,UBERON:0000019,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0010077,UBERON:0005389,UBERON:0000020,UBERON:0010371,UBERON:0007625,UBERON:0000484,UBERON:0001032,UBERON:0010317,UBERON:0000965,UBERON:0001803,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0002104,UBERON:0001801,UBERON:0004456,UBERON:0001456,UBERON:0010230
|rna_tube_id=122I7
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0000325,CL:0000255,CL:0000306,CL:0002222,CL:0002224
|rna_box=122
|rna_position=I7
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Sciencell/3H
|rna_lot_number=6756.00000
|rna_catalog_number=SC6555
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=eye
|sample_donor(cell lot)=
|sample_sex=
|sample_age=
|sample_ethnicity=
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=lens epithelial cell
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_weight_ug=10.00000
|rna_concentration=0.46000
|sample_note=
|profile_hcage=CNhs12572,LSID917,release012,MAPPING
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000075,CL:0000144,CL:0000255,CL:0000306,CL:0000325,CL:0000548,CL:0002222,CL:0002224,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000019,UBERON:0000020,UBERON:0000033,UBERON:0000047,UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000076,UBERON:0000119,UBERON:0000153,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000483,UBERON:0000484,UBERON:0000490,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000965,UBERON:0000970,UBERON:0001032,UBERON:0001048,UBERON:0001062,UBERON:0001444,UBERON:0001456,UBERON:0001801,UBERON:0001803,UBERON:0002050,UBERON:0002104,UBERON:0002532,UBERON:0002546,UBERON:0003073,UBERON:0004121,UBERON:0004456,UBERON:0005085,UBERON:0005389,UBERON:0005423,UBERON:0005426,UBERON:0007625
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000085
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002224;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000970;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001801
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 40:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Lens%2520Epithelial%2520Cells%252c%2520donor3.CNhs12572.11690-122I7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Lens%2520Epithelial%2520Cells%252c%2520donor3.CNhs12572.11690-122I7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Lens%2520Epithelial%2520Cells%252c%2520donor3.CNhs12572.11690-122I7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Lens%2520Epithelial%2520Cells%252c%2520donor3.CNhs12572.11690-122I7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Lens%2520Epithelial%2520Cells%252c%2520donor3.CNhs12572.11690-122I7.hg38.nobarcode.ctss.bed.gz
|id=FF:11690-122I7
|is_a=EFO:0002091;;FF:0000085
|is_obsolete=
|library_id=CNhs12572
|library_id_phase_based=2:CNhs12572
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11690
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11690
|name=Lens Epithelial Cells, donor3
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs12572,LSID917,release012,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=122
|rna_catalog_number=SC6555
|rna_concentration=0.46
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_lot_number=6756
|rna_od260/230=
|rna_od260/280=
|rna_position=I7
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=122I7
|rna_weight_ug=10
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=lens epithelial cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Sciencell/3H
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.57522296108789e-213!GO:0005737;cytoplasm;4.67245727837567e-192!GO:0043226;organelle;1.9061947696917e-167!GO:0043229;intracellular organelle;3.47342095363635e-167!GO:0043231;intracellular membrane-bound organelle;2.95280416985213e-164!GO:0043227;membrane-bound organelle;6.36051866328844e-164!GO:0044444;cytoplasmic part;4.76665140578515e-137!GO:0044422;organelle part;1.95829159124903e-123!GO:0044446;intracellular organelle part;5.71727597920564e-122!GO:0032991;macromolecular complex;2.35151587725079e-85!GO:0005515;protein binding;1.60185603673563e-84!GO:0030529;ribonucleoprotein complex;1.32313339097972e-75!GO:0044238;primary metabolic process;2.62240462892691e-75!GO:0044237;cellular metabolic process;1.06408521615179e-73!GO:0043170;macromolecule metabolic process;1.25598541610186e-68!GO:0043233;organelle lumen;5.60741668884477e-66!GO:0031974;membrane-enclosed lumen;5.60741668884477e-66!GO:0003723;RNA binding;5.89599105321038e-64!GO:0044428;nuclear part;5.4973313765483e-59!GO:0005739;mitochondrion;2.13012918447333e-54!GO:0005634;nucleus;6.64460380729235e-54!GO:0019538;protein metabolic process;5.02929787261537e-53!GO:0031090;organelle membrane;9.19294110762451e-53!GO:0016043;cellular component organization and biogenesis;3.19471752765823e-52!GO:0044260;cellular macromolecule metabolic process;8.54649880110596e-48!GO:0005840;ribosome;1.71769444983945e-47!GO:0033036;macromolecule localization;1.77337616076777e-47!GO:0044267;cellular protein metabolic process;4.27533312032968e-47!GO:0015031;protein transport;6.76461874289988e-47!GO:0006412;translation;1.5495188646369e-46!GO:0008104;protein localization;2.43105021551528e-44!GO:0045184;establishment of protein localization;3.2000037507864e-44!GO:0009058;biosynthetic process;2.47639729906554e-43!GO:0043234;protein complex;2.81989830442611e-43!GO:0003735;structural constituent of ribosome;5.61550565028919e-42!GO:0009059;macromolecule biosynthetic process;4.98815380107395e-40!GO:0006396;RNA processing;6.42539207733806e-39!GO:0031981;nuclear lumen;3.94207791514365e-38!GO:0044249;cellular biosynthetic process;5.51167738217381e-38!GO:0044429;mitochondrial part;2.51856260863643e-37!GO:0033279;ribosomal subunit;7.95826498094747e-37!GO:0005829;cytosol;1.14611846566449e-36!GO:0046907;intracellular transport;1.70145909068528e-36!GO:0031967;organelle envelope;6.78808377160284e-35!GO:0031975;envelope;1.30027797478176e-34!GO:0043283;biopolymer metabolic process;2.90642729008696e-34!GO:0016071;mRNA metabolic process;2.42684694635787e-32!GO:0010467;gene expression;4.447841298591e-31!GO:0006886;intracellular protein transport;1.51256375245148e-30!GO:0008380;RNA splicing;1.3619018734413e-29!GO:0065003;macromolecular complex assembly;4.89456058725977e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.55087181947614e-29!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.64102040187154e-28!GO:0006996;organelle organization and biogenesis;8.11632666231963e-28!GO:0006397;mRNA processing;1.62511396775341e-27!GO:0022607;cellular component assembly;5.44872510826156e-26!GO:0012505;endomembrane system;3.347354220875e-25!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.78794698607166e-24!GO:0005740;mitochondrial envelope;2.21765872353141e-24!GO:0005783;endoplasmic reticulum;4.26372702088239e-24!GO:0005654;nucleoplasm;4.89720465110133e-24!GO:0051649;establishment of cellular localization;1.99194531745699e-23!GO:0043228;non-membrane-bound organelle;2.26951264683278e-23!GO:0043232;intracellular non-membrane-bound organelle;2.26951264683278e-23!GO:0051641;cellular localization;2.26951264683278e-23!GO:0044445;cytosolic part;3.80876963761706e-23!GO:0031966;mitochondrial membrane;5.59748004623643e-23!GO:0006457;protein folding;1.00616703229386e-22!GO:0019866;organelle inner membrane;1.07943920622867e-22!GO:0005743;mitochondrial inner membrane;1.81999245953285e-21!GO:0005794;Golgi apparatus;2.61592244578283e-21!GO:0005681;spliceosome;1.58430273940483e-20!GO:0044451;nucleoplasm part;3.28917026228478e-20!GO:0006119;oxidative phosphorylation;5.88924857320412e-20!GO:0048770;pigment granule;1.42656130454894e-19!GO:0042470;melanosome;1.42656130454894e-19!GO:0022618;protein-RNA complex assembly;2.70192262211063e-19!GO:0016462;pyrophosphatase activity;2.85170294189373e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.35657650314703e-19!GO:0015935;small ribosomal subunit;3.76098166817581e-19!GO:0044432;endoplasmic reticulum part;4.80014218133762e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;5.6191756658447e-19!GO:0000166;nucleotide binding;8.00462557001114e-19!GO:0017111;nucleoside-triphosphatase activity;1.57015793625983e-18!GO:0015934;large ribosomal subunit;1.59438011383852e-18!GO:0008134;transcription factor binding;1.73053650242524e-17!GO:0044455;mitochondrial membrane part;2.05472001008216e-17!GO:0016874;ligase activity;3.1764669642797e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;1.5931206635e-16!GO:0006512;ubiquitin cycle;1.65611154558161e-16!GO:0006259;DNA metabolic process;3.04890260974082e-16!GO:0019941;modification-dependent protein catabolic process;3.46183290055448e-16!GO:0043632;modification-dependent macromolecule catabolic process;3.46183290055448e-16!GO:0044257;cellular protein catabolic process;3.88196134418488e-16!GO:0006511;ubiquitin-dependent protein catabolic process;5.00061236445928e-16!GO:0008135;translation factor activity, nucleic acid binding;6.65194831699039e-16!GO:0048193;Golgi vesicle transport;7.00205436652141e-16!GO:0031980;mitochondrial lumen;7.60182656264126e-16!GO:0005759;mitochondrial matrix;7.60182656264126e-16!GO:0051082;unfolded protein binding;8.81687465137112e-16!GO:0016192;vesicle-mediated transport;1.00320046073434e-15!GO:0044265;cellular macromolecule catabolic process;1.26421046578869e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.31224560515536e-15!GO:0000502;proteasome complex (sensu Eukaryota);4.19968437908685e-15!GO:0043412;biopolymer modification;4.66796940786604e-15!GO:0005730;nucleolus;8.9325667423544e-15!GO:0005746;mitochondrial respiratory chain;1.2461582889741e-14!GO:0043285;biopolymer catabolic process;2.42985445823642e-14!GO:0003676;nucleic acid binding;2.60250335758968e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.65577062350713e-14!GO:0006605;protein targeting;4.11436197491008e-14!GO:0006464;protein modification process;4.64027804883767e-14!GO:0030163;protein catabolic process;5.11238477140655e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.80314481087363e-14!GO:0009057;macromolecule catabolic process;2.34330617465182e-13!GO:0003743;translation initiation factor activity;3.30515205165576e-13!GO:0050136;NADH dehydrogenase (quinone) activity;3.40389681198035e-13!GO:0003954;NADH dehydrogenase activity;3.40389681198035e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.40389681198035e-13!GO:0032553;ribonucleotide binding;3.86761451553138e-13!GO:0032555;purine ribonucleotide binding;3.86761451553138e-13!GO:0006413;translational initiation;3.94595256127423e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.92594093958905e-13!GO:0005789;endoplasmic reticulum membrane;2.00626517066883e-12!GO:0017076;purine nucleotide binding;2.1677563593154e-12!GO:0051186;cofactor metabolic process;2.4244602284337e-12!GO:0005793;ER-Golgi intermediate compartment;3.16399196626219e-12!GO:0005761;mitochondrial ribosome;6.81643827561823e-12!GO:0000313;organellar ribosome;6.81643827561823e-12!GO:0044248;cellular catabolic process;1.02760860409758e-11!GO:0042775;organelle ATP synthesis coupled electron transport;1.33992465906141e-11!GO:0042773;ATP synthesis coupled electron transport;1.33992465906141e-11!GO:0030964;NADH dehydrogenase complex (quinone);1.88407966050543e-11!GO:0045271;respiratory chain complex I;1.88407966050543e-11!GO:0005747;mitochondrial respiratory chain complex I;1.88407966050543e-11!GO:0003712;transcription cofactor activity;2.25517509099065e-11!GO:0043687;post-translational protein modification;3.03686042147773e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.15194596086159e-11!GO:0005635;nuclear envelope;3.3450718857332e-11!GO:0007049;cell cycle;4.04382364177316e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.86649982101206e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;6.53720681171994e-11!GO:0000375;RNA splicing, via transesterification reactions;6.53720681171994e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.53720681171994e-11!GO:0048523;negative regulation of cellular process;8.65520618674725e-11!GO:0016070;RNA metabolic process;9.29936167371865e-11!GO:0006446;regulation of translational initiation;9.33715775421852e-11!GO:0012501;programmed cell death;9.33715775421852e-11!GO:0008565;protein transporter activity;1.3310399724828e-10!GO:0044431;Golgi apparatus part;1.747474460498e-10!GO:0031965;nuclear membrane;1.747474460498e-10!GO:0006915;apoptosis;1.91799116742508e-10!GO:0016604;nuclear body;4.43469378276631e-10!GO:0009055;electron carrier activity;4.57637843566638e-10!GO:0006732;coenzyme metabolic process;4.80563311728041e-10!GO:0042254;ribosome biogenesis and assembly;6.4050757260076e-10!GO:0008219;cell death;1.13657485696115e-09!GO:0016265;death;1.13657485696115e-09!GO:0005788;endoplasmic reticulum lumen;1.28986303096186e-09!GO:0003924;GTPase activity;1.88964053100908e-09!GO:0008639;small protein conjugating enzyme activity;1.88964053100908e-09!GO:0030120;vesicle coat;1.93163901084129e-09!GO:0030662;coated vesicle membrane;1.93163901084129e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.00058188245925e-09!GO:0005524;ATP binding;2.54685306260925e-09!GO:0048475;coated membrane;2.84494994908481e-09!GO:0030117;membrane coat;2.84494994908481e-09!GO:0019787;small conjugating protein ligase activity;2.89858999609548e-09!GO:0016023;cytoplasmic membrane-bound vesicle;2.96536970159316e-09!GO:0004842;ubiquitin-protein ligase activity;3.00500291058733e-09!GO:0031988;membrane-bound vesicle;3.01828723167661e-09!GO:0048519;negative regulation of biological process;3.02749767382268e-09!GO:0006913;nucleocytoplasmic transport;3.44882518859557e-09!GO:0009259;ribonucleotide metabolic process;4.06612536614407e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;4.08451137180602e-09!GO:0032559;adenyl ribonucleotide binding;4.33403647466257e-09!GO:0044453;nuclear membrane part;4.88415112620778e-09!GO:0006888;ER to Golgi vesicle-mediated transport;5.89532588651277e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.55117291517889e-09!GO:0051169;nuclear transport;7.77525721908262e-09!GO:0006163;purine nucleotide metabolic process;9.94126606879936e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.22311454236937e-08!GO:0006323;DNA packaging;1.51096106203406e-08!GO:0016607;nuclear speck;1.55990374979161e-08!GO:0016887;ATPase activity;1.73640546762082e-08!GO:0009150;purine ribonucleotide metabolic process;1.76604846296824e-08!GO:0042623;ATPase activity, coupled;1.96060371115583e-08!GO:0051276;chromosome organization and biogenesis;2.33496889876997e-08!GO:0030554;adenyl nucleotide binding;2.52559932827408e-08!GO:0004386;helicase activity;2.68093070226429e-08!GO:0006164;purine nucleotide biosynthetic process;2.82249726525408e-08!GO:0031982;vesicle;3.18597031068969e-08!GO:0031410;cytoplasmic vesicle;3.44058100484129e-08!GO:0009260;ribonucleotide biosynthetic process;3.98196602802031e-08!GO:0051246;regulation of protein metabolic process;4.49165699207988e-08!GO:0009152;purine ribonucleotide biosynthetic process;4.80180790377286e-08!GO:0005768;endosome;4.93466582499298e-08!GO:0016881;acid-amino acid ligase activity;5.64272458767902e-08!GO:0006974;response to DNA damage stimulus;6.37714048881671e-08!GO:0000139;Golgi membrane;6.71332377567796e-08!GO:0006461;protein complex assembly;6.76236877741545e-08!GO:0015986;ATP synthesis coupled proton transport;9.71955796349518e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;9.71955796349518e-08!GO:0006366;transcription from RNA polymerase II promoter;1.09248633324534e-07!GO:0008026;ATP-dependent helicase activity;1.10019177352978e-07!GO:0022402;cell cycle process;1.14653846742667e-07!GO:0009199;ribonucleoside triphosphate metabolic process;1.60385712968268e-07!GO:0009060;aerobic respiration;1.65214487087062e-07!GO:0009141;nucleoside triphosphate metabolic process;1.88271233616495e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.16058378066732e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.16058378066732e-07!GO:0017038;protein import;2.42379038721018e-07!GO:0005798;Golgi-associated vesicle;2.43689150013903e-07!GO:0006399;tRNA metabolic process;2.68417138967562e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.71515602282301e-07!GO:0009144;purine nucleoside triphosphate metabolic process;2.71515602282301e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.75000949578941e-07!GO:0004812;aminoacyl-tRNA ligase activity;2.75000949578941e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.75000949578941e-07!GO:0005643;nuclear pore;2.82514548444433e-07!GO:0031252;leading edge;3.24283505861455e-07!GO:0032446;protein modification by small protein conjugation;3.35248525439134e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.6504434878533e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.6504434878533e-07!GO:0019829;cation-transporting ATPase activity;3.8878992342281e-07!GO:0050794;regulation of cellular process;3.99645141334533e-07!GO:0045333;cellular respiration;4.23020757267751e-07!GO:0043038;amino acid activation;4.35258738650268e-07!GO:0006418;tRNA aminoacylation for protein translation;4.35258738650268e-07!GO:0043039;tRNA aminoacylation;4.35258738650268e-07!GO:0065002;intracellular protein transport across a membrane;4.88296431873224e-07!GO:0005525;GTP binding;5.5959047503209e-07!GO:0016567;protein ubiquitination;5.67277243446728e-07!GO:0043067;regulation of programmed cell death;5.87726372705598e-07!GO:0043069;negative regulation of programmed cell death;6.73252472588555e-07!GO:0009056;catabolic process;6.81858847930272e-07!GO:0065004;protein-DNA complex assembly;7.02278285043817e-07!GO:0005667;transcription factor complex;7.26577652327611e-07!GO:0042981;regulation of apoptosis;8.12089094649347e-07!GO:0003714;transcription corepressor activity;1.00608505924105e-06!GO:0007005;mitochondrion organization and biogenesis;1.10912988343989e-06!GO:0016853;isomerase activity;1.52554558111137e-06!GO:0043066;negative regulation of apoptosis;1.61608963013278e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.80047074151435e-06!GO:0051726;regulation of cell cycle;1.90230340366084e-06!GO:0046034;ATP metabolic process;1.98410598898612e-06!GO:0006281;DNA repair;1.99895535870928e-06!GO:0000074;regulation of progression through cell cycle;2.02697814596649e-06!GO:0015078;hydrogen ion transmembrane transporter activity;2.0400085264849e-06!GO:0051188;cofactor biosynthetic process;2.04111291763659e-06!GO:0006754;ATP biosynthetic process;2.24702700857199e-06!GO:0006753;nucleoside phosphate metabolic process;2.24702700857199e-06!GO:0006403;RNA localization;2.27215015853956e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.44073029882357e-06!GO:0006364;rRNA processing;2.71587633709042e-06!GO:0050657;nucleic acid transport;2.71587633709042e-06!GO:0051236;establishment of RNA localization;2.71587633709042e-06!GO:0050658;RNA transport;2.71587633709042e-06!GO:0032561;guanyl ribonucleotide binding;3.09131047207458e-06!GO:0019001;guanyl nucleotide binding;3.09131047207458e-06!GO:0006333;chromatin assembly or disassembly;3.37095743172045e-06!GO:0006916;anti-apoptosis;3.37095743172045e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.61456292744982e-06!GO:0006099;tricarboxylic acid cycle;3.86740814137453e-06!GO:0046356;acetyl-CoA catabolic process;3.86740814137453e-06!GO:0030133;transport vesicle;3.98726456293168e-06!GO:0016568;chromatin modification;4.92071241833846e-06!GO:0046930;pore complex;5.2951004815576e-06!GO:0031324;negative regulation of cellular metabolic process;5.39589556051188e-06!GO:0005770;late endosome;5.80896936250783e-06!GO:0005905;coated pit;5.97809753497728e-06!GO:0043566;structure-specific DNA binding;6.01500390168292e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;6.01500390168292e-06!GO:0016072;rRNA metabolic process;6.03499402094158e-06!GO:0016564;transcription repressor activity;6.07711675561858e-06!GO:0030532;small nuclear ribonucleoprotein complex;6.17922376056429e-06!GO:0044440;endosomal part;7.01021998840486e-06!GO:0010008;endosome membrane;7.01021998840486e-06!GO:0005839;proteasome core complex (sensu Eukaryota);7.53058752779969e-06!GO:0006793;phosphorus metabolic process;7.64218791527128e-06!GO:0006796;phosphate metabolic process;7.64218791527128e-06!GO:0009719;response to endogenous stimulus;7.78997580122884e-06!GO:0045259;proton-transporting ATP synthase complex;8.02467977518032e-06!GO:0006613;cotranslational protein targeting to membrane;8.16537529256286e-06!GO:0003713;transcription coactivator activity;8.38608085241926e-06!GO:0009109;coenzyme catabolic process;8.44481609338332e-06!GO:0045786;negative regulation of progression through cell cycle;8.62667186013963e-06!GO:0000278;mitotic cell cycle;8.8700239912434e-06!GO:0016859;cis-trans isomerase activity;8.96140386836824e-06!GO:0016740;transferase activity;9.33496807236996e-06!GO:0000245;spliceosome assembly;1.01921013234556e-05!GO:0000151;ubiquitin ligase complex;1.16537803644861e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.16946235033186e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.22939261028506e-05!GO:0008654;phospholipid biosynthetic process;1.23968727873991e-05!GO:0006084;acetyl-CoA metabolic process;1.29728023434452e-05!GO:0005773;vacuole;1.34860508845813e-05!GO:0006752;group transfer coenzyme metabolic process;1.57396496162569e-05!GO:0009892;negative regulation of metabolic process;1.67806962068478e-05!GO:0009117;nucleotide metabolic process;1.83322339174643e-05!GO:0016563;transcription activator activity;1.91195404085579e-05!GO:0003697;single-stranded DNA binding;1.94057415958228e-05!GO:0051187;cofactor catabolic process;2.01315713332078e-05!GO:0050789;regulation of biological process;2.10667733367253e-05!GO:0016310;phosphorylation;2.13447285561651e-05!GO:0051170;nuclear import;2.34161181879952e-05!GO:0008361;regulation of cell size;2.53576033518197e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.54699980863523e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.14139215677596e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.28285553798513e-05!GO:0016787;hydrolase activity;3.83596282277924e-05!GO:0006606;protein import into nucleus;3.85440808700578e-05!GO:0016049;cell growth;3.97803317173334e-05!GO:0030867;rough endoplasmic reticulum membrane;4.19200361616223e-05!GO:0004298;threonine endopeptidase activity;4.41134228361732e-05!GO:0048471;perinuclear region of cytoplasm;4.50623796221086e-05!GO:0051028;mRNA transport;4.98350403082303e-05!GO:0009108;coenzyme biosynthetic process;4.98808224407143e-05!GO:0008092;cytoskeletal protein binding;5.32849615112398e-05!GO:0033116;ER-Golgi intermediate compartment membrane;6.62079642341442e-05!GO:0019899;enzyme binding;6.94878912527883e-05!GO:0016491;oxidoreductase activity;7.37575059206861e-05!GO:0003724;RNA helicase activity;7.96145444254334e-05!GO:0005791;rough endoplasmic reticulum;8.22756191770545e-05!GO:0005852;eukaryotic translation initiation factor 3 complex;8.8488289222643e-05!GO:0000785;chromatin;8.85131681631742e-05!GO:0001558;regulation of cell growth;9.15859160134432e-05!GO:0000323;lytic vacuole;9.83979082747707e-05!GO:0005764;lysosome;9.83979082747707e-05!GO:0030029;actin filament-based process;9.84947454318606e-05!GO:0005694;chromosome;0.000100483811486167!GO:0051789;response to protein stimulus;0.000103314736445992!GO:0006986;response to unfolded protein;0.000103314736445992!GO:0015980;energy derivation by oxidation of organic compounds;0.000124907507363442!GO:0016044;membrane organization and biogenesis;0.000129629236698505!GO:0007264;small GTPase mediated signal transduction;0.000129806622069525!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000130218989225861!GO:0006334;nucleosome assembly;0.000130730051939085!GO:0005762;mitochondrial large ribosomal subunit;0.00013308008947826!GO:0000315;organellar large ribosomal subunit;0.00013308008947826!GO:0044262;cellular carbohydrate metabolic process;0.000147749938183033!GO:0045454;cell redox homeostasis;0.000149118639166647!GO:0051427;hormone receptor binding;0.000154843422920836!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000155994473752662!GO:0006612;protein targeting to membrane;0.000171151338028931!GO:0006260;DNA replication;0.000177570640863888!GO:0043623;cellular protein complex assembly;0.000179712232101578!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000179733971461726!GO:0043021;ribonucleoprotein binding;0.000205745934388303!GO:0030118;clathrin coat;0.000209389489788956!GO:0019843;rRNA binding;0.000210479410338259!GO:0016481;negative regulation of transcription;0.000221891466131191!GO:0007010;cytoskeleton organization and biogenesis;0.000251218688189384!GO:0008250;oligosaccharyl transferase complex;0.000256914042399849!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000262505432732363!GO:0016779;nucleotidyltransferase activity;0.000266837428790908!GO:0044427;chromosomal part;0.000281228582888942!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000288445632500718!GO:0030176;integral to endoplasmic reticulum membrane;0.000290540883931537!GO:0005769;early endosome;0.000297423580956084!GO:0030658;transport vesicle membrane;0.000305756472452663!GO:0035257;nuclear hormone receptor binding;0.000305756472452663!GO:0004576;oligosaccharyl transferase activity;0.000317905092816123!GO:0031497;chromatin assembly;0.000327598046135114!GO:0030659;cytoplasmic vesicle membrane;0.00034875010265473!GO:0005885;Arp2/3 protein complex;0.000350471823945615!GO:0030663;COPI coated vesicle membrane;0.000365268252795999!GO:0030126;COPI vesicle coat;0.000365268252795999!GO:0019867;outer membrane;0.000390369321983074!GO:0005048;signal sequence binding;0.000400921663708734!GO:0015630;microtubule cytoskeleton;0.000418721749098206!GO:0031072;heat shock protein binding;0.000422677863239529!GO:0031968;organelle outer membrane;0.000456859601795493!GO:0001726;ruffle;0.000489104855301909!GO:0018196;peptidyl-asparagine modification;0.000633771576157136!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000633771576157136!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000655574183237415!GO:0008610;lipid biosynthetic process;0.000676323237334984!GO:0030137;COPI-coated vesicle;0.000686209357013082!GO:0044433;cytoplasmic vesicle part;0.000687384102162347!GO:0030027;lamellipodium;0.000728444305150975!GO:0006414;translational elongation;0.000746547168034484!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000788781446390984!GO:0030660;Golgi-associated vesicle membrane;0.000821032418165734!GO:0016126;sterol biosynthetic process;0.000869008333037159!GO:0051920;peroxiredoxin activity;0.000874687787080639!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00102729575889815!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00103175330244229!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00103961093343385!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00108878278677064!GO:0003899;DNA-directed RNA polymerase activity;0.00109578128109839!GO:0016363;nuclear matrix;0.00109977518362929!GO:0051301;cell division;0.00115708402287812!GO:0046474;glycerophospholipid biosynthetic process;0.00125846793411684!GO:0003729;mRNA binding;0.00128287904698219!GO:0046467;membrane lipid biosynthetic process;0.00131117636081347!GO:0008186;RNA-dependent ATPase activity;0.0013129270585445!GO:0033673;negative regulation of kinase activity;0.0013809996364481!GO:0006469;negative regulation of protein kinase activity;0.0013809996364481!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00138976823636459!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00139671537424756!GO:0048522;positive regulation of cellular process;0.00144174184980951!GO:0019798;procollagen-proline dioxygenase activity;0.00146033876027811!GO:0000314;organellar small ribosomal subunit;0.00151835321854518!GO:0005763;mitochondrial small ribosomal subunit;0.00151835321854518!GO:0012506;vesicle membrane;0.00151971603071822!GO:0042802;identical protein binding;0.00153176711108759!GO:0030134;ER to Golgi transport vesicle;0.00155271448085534!GO:0006891;intra-Golgi vesicle-mediated transport;0.00157327358783388!GO:0007050;cell cycle arrest;0.00159913271338686!GO:0040008;regulation of growth;0.00167945617566297!GO:0048468;cell development;0.00170763152635922!GO:0005741;mitochondrial outer membrane;0.00182993889726754!GO:0007243;protein kinase cascade;0.00184330813100256!GO:0031543;peptidyl-proline dioxygenase activity;0.00192019977928345!GO:0003690;double-stranded DNA binding;0.00202279693795195!GO:0030127;COPII vesicle coat;0.00203087881474058!GO:0012507;ER to Golgi transport vesicle membrane;0.00203087881474058!GO:0051348;negative regulation of transferase activity;0.00203720508671723!GO:0043284;biopolymer biosynthetic process;0.00213949504109198!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00216704371120132!GO:0015399;primary active transmembrane transporter activity;0.00216704371120132!GO:0000059;protein import into nucleus, docking;0.00216704371120132!GO:0030132;clathrin coat of coated pit;0.00218209065209396!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00222309816212074!GO:0005813;centrosome;0.00227697402791516!GO:0048500;signal recognition particle;0.00235406529901971!GO:0051168;nuclear export;0.00240139619345758!GO:0000087;M phase of mitotic cell cycle;0.00250320287979296!GO:0009165;nucleotide biosynthetic process;0.00257840902961504!GO:0030119;AP-type membrane coat adaptor complex;0.00258288830870509!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0026716810165365!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0026716810165365!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0026716810165365!GO:0045045;secretory pathway;0.00280204505397022!GO:0006091;generation of precursor metabolites and energy;0.00280843357494581!GO:0022403;cell cycle phase;0.00285593729719012!GO:0006839;mitochondrial transport;0.0029153060390075!GO:0007067;mitosis;0.00293757622993366!GO:0006695;cholesterol biosynthetic process;0.00306654800286235!GO:0004004;ATP-dependent RNA helicase activity;0.00317395082021945!GO:0006383;transcription from RNA polymerase III promoter;0.00325339948093069!GO:0051252;regulation of RNA metabolic process;0.00335985846319232!GO:0006509;membrane protein ectodomain proteolysis;0.00366203770434636!GO:0033619;membrane protein proteolysis;0.00366203770434636!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00379638605754943!GO:0046489;phosphoinositide biosynthetic process;0.00380822585107718!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00383128680665499!GO:0030125;clathrin vesicle coat;0.00388512345226388!GO:0030665;clathrin coated vesicle membrane;0.00388512345226388!GO:0016197;endosome transport;0.00392450131133514!GO:0030131;clathrin adaptor complex;0.0039999179113251!GO:0065009;regulation of a molecular function;0.00409264936201366!GO:0043681;protein import into mitochondrion;0.0041518802190173!GO:0006402;mRNA catabolic process;0.00459118994492911!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00462415973837213!GO:0045047;protein targeting to ER;0.00462415973837213!GO:0008139;nuclear localization sequence binding;0.00466940922139676!GO:0051128;regulation of cellular component organization and biogenesis;0.00503923000987147!GO:0030521;androgen receptor signaling pathway;0.00526479741097773!GO:0005815;microtubule organizing center;0.00526479741097773!GO:0035258;steroid hormone receptor binding;0.00526570611482646!GO:0051329;interphase of mitotic cell cycle;0.00567431157630544!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00570586767927671!GO:0006352;transcription initiation;0.00578362996640235!GO:0006892;post-Golgi vesicle-mediated transport;0.00622706321216151!GO:0006626;protein targeting to mitochondrion;0.00627417577888409!GO:0000049;tRNA binding;0.0064545473042985!GO:0007040;lysosome organization and biogenesis;0.0064545473042985!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00652688769687201!GO:0045893;positive regulation of transcription, DNA-dependent;0.00679860645314761!GO:0015992;proton transport;0.00706597363783159!GO:0017166;vinculin binding;0.00711327865114978!GO:0048487;beta-tubulin binding;0.00725290088455197!GO:0030880;RNA polymerase complex;0.00743114874674802!GO:0006818;hydrogen transport;0.0078527812247221!GO:0007006;mitochondrial membrane organization and biogenesis;0.00789699300104553!GO:0008312;7S RNA binding;0.00797310976222751!GO:0008047;enzyme activator activity;0.00826770175598107!GO:0031418;L-ascorbic acid binding;0.00836003733255983!GO:0003711;transcription elongation regulator activity;0.00839093509981214!GO:0003779;actin binding;0.00841008496361415!GO:0051270;regulation of cell motility;0.00841008496361415!GO:0019222;regulation of metabolic process;0.00854422418091896!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00860260021815486!GO:0006650;glycerophospholipid metabolic process;0.00878631020813864!GO:0045892;negative regulation of transcription, DNA-dependent;0.00896811512302183!GO:0051325;interphase;0.00912637657600079!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00927653489171983!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00927653489171983!GO:0051087;chaperone binding;0.00932276878135393!GO:0031124;mRNA 3'-end processing;0.00940740209779069!GO:0007033;vacuole organization and biogenesis;0.00956334190652977!GO:0031902;late endosome membrane;0.00973252199675857!GO:0043488;regulation of mRNA stability;0.0101744045226092!GO:0043487;regulation of RNA stability;0.0101744045226092!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0102193007437837!GO:0005869;dynactin complex;0.0103068506824772!GO:0006897;endocytosis;0.0105905071142221!GO:0010324;membrane invagination;0.0105905071142221!GO:0006740;NADPH regeneration;0.0108239091395872!GO:0006098;pentose-phosphate shunt;0.0108239091395872!GO:0005862;muscle thin filament tropomyosin;0.0110274113631279!GO:0007265;Ras protein signal transduction;0.0111820498683726!GO:0008180;signalosome;0.0115527789650353!GO:0044452;nucleolar part;0.0118950548638428!GO:0000902;cell morphogenesis;0.0119088609556736!GO:0032989;cellular structure morphogenesis;0.0119088609556736!GO:0016251;general RNA polymerase II transcription factor activity;0.0120230457110448!GO:0000339;RNA cap binding;0.0121145819818638!GO:0031625;ubiquitin protein ligase binding;0.0122768449862216!GO:0000209;protein polyubiquitination;0.0122768449862216!GO:0032940;secretion by cell;0.0125149910367074!GO:0008286;insulin receptor signaling pathway;0.0125759287729509!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0126911614839665!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0129850355263271!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0129850355263271!GO:0031301;integral to organelle membrane;0.0131244064165689!GO:0065007;biological regulation;0.0131858337137626!GO:0006417;regulation of translation;0.0134568773229683!GO:0030384;phosphoinositide metabolic process;0.0140165991256417!GO:0043022;ribosome binding;0.0145168703591414!GO:0051101;regulation of DNA binding;0.0145286015723117!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0146712417873431!GO:0000428;DNA-directed RNA polymerase complex;0.0146712417873431!GO:0045941;positive regulation of transcription;0.0147152743991678!GO:0043492;ATPase activity, coupled to movement of substances;0.0148674921772104!GO:0005832;chaperonin-containing T-complex;0.015728630722928!GO:0051287;NAD binding;0.015955597881937!GO:0031123;RNA 3'-end processing;0.0160527112708151!GO:0006643;membrane lipid metabolic process;0.0161113385403995!GO:0007030;Golgi organization and biogenesis;0.0171085441728531!GO:0050811;GABA receptor binding;0.0178715917838396!GO:0015631;tubulin binding;0.0179600736130319!GO:0050681;androgen receptor binding;0.017971782917065!GO:0005669;transcription factor TFIID complex;0.0182961426627266!GO:0003684;damaged DNA binding;0.0185057017832613!GO:0003746;translation elongation factor activity;0.0185911580513136!GO:0006518;peptide metabolic process;0.0192015100316543!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0193900668647616!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0194008144382874!GO:0040011;locomotion;0.0198028792377756!GO:0031529;ruffle organization and biogenesis;0.0198612738119824!GO:0016272;prefoldin complex;0.0200538631305482!GO:0044420;extracellular matrix part;0.0205264988657186!GO:0051098;regulation of binding;0.0205765216683756!GO:0006672;ceramide metabolic process;0.0209817382114451!GO:0003682;chromatin binding;0.0213711905515948!GO:0040012;regulation of locomotion;0.0213711905515948!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0213941360348929!GO:0006979;response to oxidative stress;0.0213941360348929!GO:0050750;low-density lipoprotein receptor binding;0.0214757738083688!GO:0032984;macromolecular complex disassembly;0.0215742115616897!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0215742115616897!GO:0008022;protein C-terminus binding;0.021994451325887!GO:0016408;C-acyltransferase activity;0.0220748688651201!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0224062067006612!GO:0032906;transforming growth factor-beta2 production;0.0224062067006612!GO:0032909;regulation of transforming growth factor-beta2 production;0.0224062067006612!GO:0031901;early endosome membrane;0.0224773448671241!GO:0030145;manganese ion binding;0.0232202963391897!GO:0043624;cellular protein complex disassembly;0.0236406300243035!GO:0000082;G1/S transition of mitotic cell cycle;0.0246199596252111!GO:0005801;cis-Golgi network;0.0246610973602844!GO:0006497;protein amino acid lipidation;0.0246950382968022!GO:0008632;apoptotic program;0.0250009381299959!GO:0006611;protein export from nucleus;0.0251559121767655!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0251559121767655!GO:0015002;heme-copper terminal oxidase activity;0.0251559121767655!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0251559121767655!GO:0004129;cytochrome-c oxidase activity;0.0251559121767655!GO:0045792;negative regulation of cell size;0.0251751202629!GO:0046519;sphingoid metabolic process;0.025182673347158!GO:0000096;sulfur amino acid metabolic process;0.0251969300371649!GO:0005581;collagen;0.0253346355904442!GO:0008147;structural constituent of bone;0.0253990648808512!GO:0019752;carboxylic acid metabolic process;0.0260664236212446!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0261982995930735!GO:0016860;intramolecular oxidoreductase activity;0.0263500713336883!GO:0007034;vacuolar transport;0.026426170390961!GO:0030308;negative regulation of cell growth;0.026482313960954!GO:0006082;organic acid metabolic process;0.0265025533884252!GO:0008154;actin polymerization and/or depolymerization;0.0265025533884252!GO:0004674;protein serine/threonine kinase activity;0.0265025533884252!GO:0006790;sulfur metabolic process;0.0265465528098255!GO:0006595;polyamine metabolic process;0.0271661320511277!GO:0003756;protein disulfide isomerase activity;0.0277231033291215!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0277231033291215!GO:0005684;U2-dependent spliceosome;0.0302687277909286!GO:0016584;nucleosome positioning;0.0307504716697404!GO:0045936;negative regulation of phosphate metabolic process;0.0307504716697404!GO:0030518;steroid hormone receptor signaling pathway;0.0312341322820893!GO:0006289;nucleotide-excision repair;0.031532407106283!GO:0006338;chromatin remodeling;0.0317799320593117!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0320437638229085!GO:0006376;mRNA splice site selection;0.0322903235956737!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0322903235956737!GO:0008652;amino acid biosynthetic process;0.0325597273756633!GO:0043086;negative regulation of catalytic activity;0.0326772012852006!GO:0030140;trans-Golgi network transport vesicle;0.0326772012852006!GO:0043034;costamere;0.032848090279301!GO:0006144;purine base metabolic process;0.0330201757229568!GO:0042158;lipoprotein biosynthetic process;0.0330222251819238!GO:0050790;regulation of catalytic activity;0.0336507415446465!GO:0022406;membrane docking;0.0337411022800116!GO:0048278;vesicle docking;0.0337411022800116!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0343310764130856!GO:0033043;regulation of organelle organization and biogenesis;0.0343310764130856!GO:0051059;NF-kappaB binding;0.0353438834324722!GO:0008637;apoptotic mitochondrial changes;0.035869383174368!GO:0043241;protein complex disassembly;0.036062814514959!GO:0006984;ER-nuclear signaling pathway;0.036062814514959!GO:0030032;lamellipodium biogenesis;0.036159176445836!GO:0048518;positive regulation of biological process;0.0363257266335758!GO:0005938;cell cortex;0.0363262155833152!GO:0042585;germinal vesicle;0.0363373896881875!GO:0051540;metal cluster binding;0.0372964598118123!GO:0051536;iron-sulfur cluster binding;0.0372964598118123!GO:0006739;NADP metabolic process;0.0380003194528935!GO:0004177;aminopeptidase activity;0.0383142321531745!GO:0006378;mRNA polyadenylation;0.0383142321531745!GO:0030433;ER-associated protein catabolic process;0.0383932169013383!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0383932169013383!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0388195347137478!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0388195347137478!GO:0004860;protein kinase inhibitor activity;0.0388195347137478!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0392577860349043!GO:0006007;glucose catabolic process;0.0393486425905151!GO:0008538;proteasome activator activity;0.03948220515373!GO:0031371;ubiquitin conjugating enzyme complex;0.0395789270250735!GO:0046483;heterocycle metabolic process;0.0397584234572898!GO:0048819;regulation of hair follicle maturation;0.0398441068427107!GO:0051794;regulation of catagen;0.0398441068427107!GO:0051795;positive regulation of catagen;0.0398441068427107!GO:0048818;positive regulation of hair follicle maturation;0.0398441068427107!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0400179526156798!GO:0009889;regulation of biosynthetic process;0.0402691695606784!GO:0007021;tubulin folding;0.0402937993591026!GO:0006506;GPI anchor biosynthetic process;0.0403280194910596!GO:0022890;inorganic cation transmembrane transporter activity;0.0403280194910596!GO:0008033;tRNA processing;0.0408712006046791!GO:0045334;clathrin-coated endocytic vesicle;0.041405043011846!GO:0005637;nuclear inner membrane;0.0414657843843157!GO:0006354;RNA elongation;0.0414657843843157!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.0414657843843157!GO:0005100;Rho GTPase activator activity;0.0414981177227276!GO:0009967;positive regulation of signal transduction;0.0415575689890422!GO:0006644;phospholipid metabolic process;0.0417988509491167!GO:0033559;unsaturated fatty acid metabolic process;0.0418169495026985!GO:0006636;unsaturated fatty acid biosynthetic process;0.0418169495026985!GO:0006505;GPI anchor metabolic process;0.0419983956841443!GO:0030833;regulation of actin filament polymerization;0.0424472991212477!GO:0006401;RNA catabolic process;0.0426719828561836!GO:0003923;GPI-anchor transamidase activity;0.0431202922277581!GO:0016255;attachment of GPI anchor to protein;0.0431202922277581!GO:0042765;GPI-anchor transamidase complex;0.0431202922277581!GO:0030100;regulation of endocytosis;0.043703382368556!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0442347777593166!GO:0001952;regulation of cell-matrix adhesion;0.0444365840190503!GO:0031326;regulation of cellular biosynthetic process;0.044871167908828!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0450206947542052!GO:0030041;actin filament polymerization;0.0453228411815929!GO:0005784;translocon complex;0.046105819228267!GO:0006607;NLS-bearing substrate import into nucleus;0.0462976751582244!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0462997605723979!GO:0005099;Ras GTPase activator activity;0.046758711333406!GO:0031575;G1/S transition checkpoint;0.046758711333406!GO:0006904;vesicle docking during exocytosis;0.0468213222758575!GO:0006720;isoprenoid metabolic process;0.0468377651189878!GO:0005975;carbohydrate metabolic process;0.0470474334141259!GO:0035035;histone acetyltransferase binding;0.0471272726683603!GO:0007004;telomere maintenance via telomerase;0.0471272726683603!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0477399570563317!GO:0048144;fibroblast proliferation;0.0477678218444668!GO:0048145;regulation of fibroblast proliferation;0.0477678218444668!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0477678218444668!GO:0022408;negative regulation of cell-cell adhesion;0.0478394350851615!GO:0051052;regulation of DNA metabolic process;0.0480666488209473!GO:0005774;vacuolar membrane;0.0484271763315218!GO:0008287;protein serine/threonine phosphatase complex;0.0492440846294568!GO:0035267;NuA4 histone acetyltransferase complex;0.0494494303585437!GO:0008234;cysteine-type peptidase activity;0.049941954940561!GO:0000786;nucleosome;0.0499472095669902
|sample_id=11690
|sample_note=
|sample_sex=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=eye
|top_motifs=NKX3-1:1.67458090786;PAX1,9:1.43948876933;NKX2-1,4:1.39311545787;SOX17:1.34922324561;TAL1_TCF{3,4,12}:1.26360954985;NFATC1..3:1.23781901264;HSF1,2:1.20486422597;SRF:1.20156797369;MAZ:1.19669779524;TEAD1:1.18602556062;NR3C1:1.14600659144;HIF1A:1.1082525395;EN1,2:1.10810519432;MZF1:1.08030255374;HOX{A5,B5}:1.03222867532;SOX2:0.985583607861;TFAP4:0.972544973297;ZNF384:0.95592569357;T:0.930615005345;IKZF1:0.913015505665;GTF2A1,2:0.902052300206;MTE{core}:0.890286127921;POU3F1..4:0.882811056484;ATF6:0.862442156426;TBX4,5:0.850887673411;NANOG{mouse}:0.839996168007;SMAD1..7,9:0.832268455679;MYBL2:0.826551290137;GLI1..3:0.819945114044;PATZ1:0.818357976883;NHLH1,2:0.784699212228;TFAP2{A,C}:0.773109598019;TP53:0.769993216088;GTF2I:0.754009469398;TFCP2:0.724785109751;TLX1..3_NFIC{dimer}:0.706795583492;FOXA2:0.694169239519;LHX3,4:0.669436771304;NANOG:0.658423414898;GFI1B:0.655309768394;POU5F1:0.61474953148;ZFP161:0.608167897766;ZNF148:0.60581283662;EGR1..3:0.596703741776;NKX2-3_NKX2-5:0.587812843673;DBP:0.581126999405;CDC5L:0.553082161845;PAX5:0.536288095205;EBF1:0.526109324033;KLF4:0.514478462286;PRDM1:0.498185934662;MYFfamily:0.479876273046;MAFB:0.47853596945;TBP:0.468760747721;CRX:0.45980369185;ADNP_IRX_SIX_ZHX:0.458584868453;SP1:0.455328727188;ONECUT1,2:0.443751842858;LEF1_TCF7_TCF7L1,2:0.438116609269;AHR_ARNT_ARNT2:0.412194525861;ALX1:0.410811395206;NR6A1:0.389954898913;PAX4:0.371970830638;FOXN1:0.351773609111;HIC1:0.351198949858;PDX1:0.346814457573;GFI1:0.341707761391;ZNF423:0.339746424514;GATA4:0.336169337536;NFE2L2:0.316447550594;PAX8:0.315174128704;PRRX1,2:0.307559452183;ZIC1..3:0.305523415376;HOX{A4,D4}:0.301903632677;XCPE1{core}:0.301264701944;FOSL2:0.295775808938;TFAP2B:0.286858289188;NKX3-2:0.281702656678;RXR{A,B,G}:0.274407763198;VSX1,2:0.261164804933;NRF1:0.223182694904;ALX4:0.217496264713;EVI1:0.213501677471;TLX2:0.205982229324;HMGA1,2:0.200646831276;XBP1:0.198554114306;ZBTB6:0.190170841652;TFDP1:0.170107182689;STAT5{A,B}:0.160391202865;NFE2L1:0.15612242294;HOXA9_MEIS1:0.152984500573;NFIX:0.138738316922;MED-1{core}:0.138586080087;FOXM1:0.136864155107;JUN:0.132768332948;STAT1,3:0.12224464556;ELK1,4_GABP{A,B1}:0.1143591815;NFY{A,B,C}:0.0917675012653;RORA:0.0839246809576;ZNF143:0.0836742688914;TEF:0.0834139449426;REST:0.0516880823287;HNF1A:0.0478759129894;AR:0.0351637172283;BACH2:0.0348697300141;AIRE:0.0325187186054;FOXP3:0.0282892224121;HLF:0.022446491684;UFEwm:0.0163746298552;RFX1:0.0155969145082;ELF1,2,4:0.0114171446822;HNF4A_NR2F1,2:0.0087330075171;SPZ1:-0.00355215340229;HOX{A6,A7,B6,B7}:-0.00649853712399;bHLH_family:-0.0101732179176;NFE2:-0.0237164732144;NR1H4:-0.0355901344537;GZF1:-0.0359008252364;CUX2:-0.0449482967533;RBPJ:-0.047398418698;FOXQ1:-0.0652994981583;NFIL3:-0.0711118850371;MEF2{A,B,C,D}:-0.0784443691061;GATA6:-0.0821938502787;POU6F1:-0.0825568209298;PAX6:-0.0964393956702;MYOD1:-0.102091955371;FOX{D1,D2}:-0.107310536345;RREB1:-0.110916122746;MTF1:-0.114777491656;PAX2:-0.11590239335;IRF7:-0.12476763092;FOS_FOS{B,L1}_JUN{B,D}:-0.132322190524;OCT4_SOX2{dimer}:-0.136370413265;HMX1:-0.136948221071;HAND1,2:-0.13757893622;ATF2:-0.138914546963;CDX1,2,4:-0.140819645839;TGIF1:-0.149885906859;ZNF238:-0.160305452065;PPARG:-0.164789116545;SOX5:-0.184558695975;PBX1:-0.185997436751;CEBPA,B_DDIT3:-0.195885604859;IRF1,2:-0.196148279387;SREBF1,2:-0.206890028898;RUNX1..3:-0.225016570061;SOX{8,9,10}:-0.253273102409;ATF4:-0.274335692534;FOX{I1,J2}:-0.276497232213;NFKB1_REL_RELA:-0.280782494275;HBP1_HMGB_SSRP1_UBTF:-0.29598086777;BREu{core}:-0.316259834833;ZEB1:-0.322596697214;FOX{F1,F2,J1}:-0.322838282573;SNAI1..3:-0.325800186995;LMO2:-0.331817123215;EP300:-0.349750368321;ETS1,2:-0.351187139085;MYB:-0.377507594249;TOPORS:-0.379376853544;NR5A1,2:-0.379953936866;ATF5_CREB3:-0.3829318602;SPI1:-0.385737782584;STAT2,4,6:-0.392629418042;GCM1,2:-0.423419922596;E2F1..5:-0.479510880058;ESRRA:-0.5031493446;YY1:-0.516139765613;SPIB:-0.526116057979;NKX2-2,8:-0.530262343473;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.530728263858;BPTF:-0.535896672523;ARID5B:-0.540648524139;DMAP1_NCOR{1,2}_SMARC:-0.54463842395;RFX2..5_RFXANK_RFXAP:-0.567803995577;POU2F1..3:-0.56783071965;FOXL1:-0.620979006965;RXRA_VDR{dimer}:-0.647022361766;POU1F1:-0.65316290194;ESR1:-0.688416561939;FOXO1,3,4:-0.730227491875;PAX3,7:-0.822284658351;NKX6-1,2:-0.891287515332;ZBTB16:-0.920160397998;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.950518278456;CREB1:-0.954637039973;IKZF2:-1.01000316417;HES1:-1.09708170538;PITX1..3:-1.09719954736;FOXP1:-1.18917940598;FOXD3:-1.26546068335
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11690-122I7;search_select_hide=table117:FF:11690-122I7
}}
}}

Latest revision as of 18:15, 4 June 2020

Name:Lens Epithelial Cells, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12572
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueeye
dev stageNA
sexNA
ageNA
cell typelens epithelial cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number6756
catalog numberSC6555
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004687
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12572 CAGE DRX008321 DRR009193
Accession ID Hg19

Library idBAMCTSS
CNhs12572 DRZ000618 DRZ002003
Accession ID Hg38

Library idBAMCTSS
CNhs12572 DRZ011968 DRZ013353
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.219
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.209
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0752
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.563
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.074
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.14
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.361
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.583
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0482
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0466
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.419
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.392
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0482
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0482
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.131
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.0916
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.228
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.382
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.313
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.644
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12572

Jaspar motifP-value
MA0002.20.262
MA0003.10.466
MA0004.10.109
MA0006.10.277
MA0007.10.403
MA0009.10.0642
MA0014.10.0355
MA0017.10.0566
MA0018.20.0409
MA0019.10.349
MA0024.10.0558
MA0025.10.477
MA0027.10.796
MA0028.10.502
MA0029.10.707
MA0030.10.98
MA0031.10.511
MA0035.20.964
MA0038.10.265
MA0039.20.526
MA0040.10.545
MA0041.10.366
MA0042.10.553
MA0043.10.182
MA0046.10.374
MA0047.20.637
MA0048.10.73
MA0050.10.00605
MA0051.10.816
MA0052.10.098
MA0055.10.0597
MA0057.10.853
MA0058.10.0508
MA0059.10.032
MA0060.10.23
MA0061.10.0317
MA0062.20.0315
MA0065.20.00106
MA0066.10.196
MA0067.10.0216
MA0068.10.0537
MA0069.10.956
MA0070.10.82
MA0071.10.131
MA0072.10.902
MA0073.10.776
MA0074.10.134
MA0076.10.595
MA0077.10.482
MA0078.10.422
MA0079.20.613
MA0080.27.40192e-6
MA0081.10.218
MA0083.17.8835e-5
MA0084.10.897
MA0087.10.766
MA0088.10.0497
MA0090.12.98753e-4
MA0091.10.967
MA0092.10.905
MA0093.10.148
MA0099.20.745
MA0100.10.994
MA0101.10.536
MA0102.20.0765
MA0103.10.0243
MA0104.20.0115
MA0105.13.59916e-4
MA0106.10.442
MA0107.10.285
MA0108.24.86122e-5
MA0111.10.272
MA0112.23.95966e-4
MA0113.10.692
MA0114.10.0243
MA0115.10.0381
MA0116.12.17276e-4
MA0117.10.529
MA0119.10.236
MA0122.10.479
MA0124.10.483
MA0125.10.997
MA0131.10.645
MA0135.10.266
MA0136.11.31105e-7
MA0137.20.751
MA0138.20.204
MA0139.10.475
MA0140.10.903
MA0141.10.015
MA0142.10.859
MA0143.10.793
MA0144.10.751
MA0145.10.992
MA0146.10.00867
MA0147.10.0162
MA0148.10.598
MA0149.10.06
MA0150.10.168
MA0152.10.247
MA0153.10.166
MA0154.10.0801
MA0155.10.552
MA0156.10.00126
MA0157.10.649
MA0159.10.101
MA0160.10.0104
MA0162.10.368
MA0163.17.85861e-6
MA0164.10.952
MA0258.15.53173e-4
MA0259.10.218



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12572

Novel motifP-value
10.0251
100.0316
1000.288
1010.574
1020.168
1030.698
1040.809
1050.982
1060.272
1070.901
1080.747
1090.0301
110.0257
1100.141
1110.00572
1120.0769
1130.0894
1140.135
1150.382
1160.482
1170.0321
1180.0324
1190.206
120.317
1200.779
1210.915
1220.867
1232.29713e-6
1240.944
1250.149
1260.424
1270.433
1280.474
1290.179
130.0646
1300.226
1310.395
1320.908
1330.0266
1340.597
1350.403
1360.89
1370.141
1380.561
1390.0971
140.491
1400.356
1410.0344
1420.913
1430.931
1440.868
1450.189
1460.929
1470.403
1480.0295
1490.55
150.324
1500.833
1510.301
1520.701
1530.996
1540.923
1556.20634e-4
1560.162
1570.357
1580.00259
1590.403
160.508
1600.161
1610.245
1620.737
1630.0528
1640.127
1650.564
1660.125
1670.156
1680.904
1690.0176
170.357
180.459
190.403
20.89
200.262
210.0957
220.364
230.747
240.576
250.279
260.00874
270.827
280.899
290.0974
30.124
300.295
310.99
320.349
330.181
340.851
350.226
360.0277
370.228
380.151
390.589
40.593
400.0243
410.295
420.38
430.12
440.293
450.778
460.0596
470.0419
480.121
490.0348
50.754
500.791
510.517
520.981
530.209
540.611
550.894
560.614
570.27
580.145
590.403
60.174
600.143
610.162
620.137
630.2
640.114
650.222
660.571
670.973
680.665
690.895
70.242
700.0393
710.0382
720.844
730.25
740.192
750.012
760.0511
770.244
780.301
790.817
80.2
800.17
810.301
820.156
830.58
840.769
850.27
860.593
870.789
880.932
890.639
90.898
900.279
910.962
920.832
930.553
940.188
950.0403
960.0784
970.319
980.0278
990.569



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12572


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000255 (eukaryotic cell)
0000306 (crystallin accumulating cell)
0002222 (vertebrate lens cell)
0002224 (lens epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000970 (eye)
0000019 (camera-type eye)
0000483 (epithelium)
0000033 (head)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0010077 (cuboidal epithelium)
0005389 (transparent eye structure)
0000020 (sense organ)
0010371 (ecto-epithelium)
0007625 (pigment epithelium of eye)
0000484 (simple cuboidal epithelium)
0001032 (sensory system)
0010317 (germ layer / neural crest derived structure)
0000965 (lens of camera-type eye)
0001803 (epithelium of lens)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002104 (visual system)
0001801 (anterior segment of eyeball)
0004456 (entire sense organ system)
0001456 (face)
0010230 (eyeball of camera-type eye)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000085 (human lens epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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