FF:11693-123A1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00004707 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX008521;DRR009393;DRZ000818;DRZ002203;DRZ012168;DRZ013553 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000970,UBERON:0000019,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000020,UBERON:0002203,UBERON:0001768,UBERON:0001032,UBERON:0002049,UBERON:0002200,UBERON:0006876,UBERON:0010317,UBERON:0007798,UBERON:0005969,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0004535,UBERON:0002104,UBERON:0001801,UBERON:0004456,UBERON:0001456,UBERON:0010230,UBERON:0001009,UBERON:0003956 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0002367 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000188 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.04!107.78!TCF21;;chr7:19157248..19157268,-!p1@TWIST1!1.94!228.16!TWIST1;;chr9:132427883..132427951,+!p2@PRRX2!1.91!79.79!PRRX2;;chr16:86544113..86544145,+!p1@FOXF1!1.87!89.23!FOXF1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.81!63.34!POU3F3;;chr9:132427972..132428056,+!p1@PRRX2!1.70!64.04!PRRX2;;chr2:239756671..239756732,+!p1@TWIST2!1.69!149.42!TWIST2;;chr9:129376233..129376251,+!p2@LMX1B!1.68!47.24!LMX1B;;chr5:2751762..2751784,-!p1@IRX2!1.63!41.64!IRX2;;chr6:50786591..50786614,+!p1@TFAP2B!1.63!41.29!TFAP2B;;chr4:111544219..111544240,-!p1@PITX2!1.62!40.24!PITX2;;chr6:34204921..34204939,+!p3@HMGA1!1.57!1027.41!HMGA1;;chr9:129376201..129376225,+!p1@LMX1B!1.57!36.04!LMX1B;;chr19:46801639..46801699,+!p1@HIF3A!1.56!35.69!HIF3A;;chr2:239756739..239756755,+!p2@TWIST2!1.50!51.09!TWIST2;;chr20:42543441..42543497,+!p1@TOX2!1.47!123.18!TOX2;;chr11:46299199..46299233,+!p1@CREB3L1!1.45!136.12!CREB3L1;;chr17:59477233..59477263,+!p1@TBX2!1.34!62.99!TBX2;;chr5:92918919..92918942,+!p1@NR2F1!1.33!89.58!NR2F1;;chr17:41622765..41622821,-!p2@ETV4!1.31!29.74!ETV4;;chr5:3595977..3595999,+!p1@IRX1!1.31!19.25!IRX1;;chr20:42543506..42543549,+!p2@TOX2!1.30!45.14!TOX2;;chr17:41622925..41622976,-!p3@ETV4!1.29!27.29!ETV4;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.29!19.95!GLIS1;;chr17:41623009..41623053,-!p4@ETV4!1.28!28.69!ETV4;;chr16:86600426..86600441,+!p1@FOXC2!1.27!43.04!FOXC2;;chr19:45260775..45260838,+!p5@BCL3!1.25!21.70!BCL3;;chr11:63684602..63684664,-!p1@RCOR2!1.23!31.14!RCOR2;;chr17:41623692..41623715,-!p1@ETV4!1.21!64.04!ETV4;;chr11:46299539..46299620,+!p2@CREB3L1!1.20!24.85!CREB3L1;;chr2:5832508..5832524,+!p1@SOX11!1.20!14.70!SOX11;;chr4:111558135..111558198,-!p2@PITX2!1.19!14.35!PITX2;;chr17:59477197..59477212,+!p2@TBX2!1.18!24.15!TBX2;;chr5:92918956..92918969,+!p4@NR2F1!1.18!15.40!NR2F1;;chr5:3595934..3595957,+!p2@IRX1!1.17!13.65!IRX1;;chr5:3595961..3595975,+!p3@IRX1!1.17!13.65!IRX1;;chr16:54320101..54320125,-!p4@IRX3!1.16!19.25!IRX3;;chr1:170633348..170633399,+!p2@PRRX1!1.16!18.20!PRRX1;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.16!13.30!POU3F3;;chr15:57511609..57511651,+!p2@TCF12!1.15!22.05!TCF12;;chr1:170632285..170632309,+!p1@PRRX1!1.15!14.70!PRRX1;;chr7:19157043..19157088,-!p2@TWIST1!1.12!30.44!TWIST1;;chr17:59477275..59477286,+!p3@TBX2!1.10!15.40!TBX2;;chr17:41622834..41622883,-!p6@ETV4!1.10!14.00!ETV4;;chr15:83953397..83953425,-!p1@BNC1!1.10!13.30!BNC1;;chr7:44143925..44143970,+!p1@AEBP1!1.08!246.70!AEBP1;;chr8:60031682..60031710,-!p2@TOX!1.08!17.85!TOX;;chr5:92919100..92919135,+!p3@NR2F1!1.08!13.30!NR2F1;;chr5:2751785..2751808,-!p2@IRX2!1.07!10.85!IRX2;;chr12:2986206..2986258,-!p2@FOXM1!1.06!63.34!FOXM1;;chr14:74256787..74256858,-!p6@C14orf43!1.05!10.15!C14orf43;;chr11:113930425..113930471,+!p1@ZBTB16!1.04!14.35!ZBTB16;;chr8:60031809..60031835,-!p4@TOX!1.04!12.60!TOX;;chr5:92918894..92918912,+!p2@NR2F1!1.03!32.54!NR2F1;;chr8:60031619..60031676,-!p1@TOX!1.03!21.35!TOX;;chr15:67418119..67418162,+!p5@SMAD3!1.03!10.85!SMAD3;;chr17:41622731..41622764,-!p5@ETV4!1.03!9.80!ETV4;;chr6:41701581..41701613,-!p2@TFEB!1.03!9.80!TFEB;;chr8:48650715..48650735,-!p1@CEBPD!1.02!1219.87!CEBPD;;chr6:1389789..1389821,+!p1@FOXF2!1.01!12.95!FOXF2;;chr9:77112244..77112262,+!p1@RORB!1.00!10.15!RORB;;chr17:46132044..46132080,+!p4@NFE2L1!1.00!9.10!NFE2L1;;chr17:17726907..17726958,-!p2@SREBF1!0.99!54.94!SREBF1;;chr12:66218255..66218304,+!p3@HMGA2!0.99!24.15!HMGA2;;chr1:164528687..164528711,+!p6@PBX1!0.99!10.15!PBX1;;chr6:50786571..50786590,+!p2@TFAP2B!0.99!8.75!TFAP2B;;chr8:93074848..93074871,-!p3@RUNX1T1!0.99!8.75!RUNX1T1;;chr19:49865646..49865718,-!p1@TEAD2!0.97!74.19!TEAD2;;chr6:41701557..41701578,-!p3@TFEB!0.97!8.40!TFEB;;chr16:54320158..54320200,-!p5@IRX3!0.96!11.90!IRX3;;chr5:92919068..92919082,+!p5@NR2F1!0.96!9.80!NR2F1;;chr19:46800289..46800327,+!p2@HIF3A!0.96!8.05!HIF3A;;chr16:54964899..54964914,+!p2@IRX5!0.94!7.70!IRX5;;chr4:111544254..111544270,-!p3@PITX2!0.94!7.70!PITX2;;chr6:50789717..50789729,+!p4@TFAP2B!0.94!7.70!TFAP2B;;chr5:176738887..176738934,-!p1@MXD3!0.92!50.39!MXD3;;chr21:47063625..47063658,+!p1@PCBP3!0.92!32.89!PCBP3;;chr20:42295713..42295738,+!p2@MYBL2!0.91!44.44!MYBL2;;chr17:1959369..1959388,+!p2@HIC1!0.91!19.60!HIC1;;chr17:41623667..41623682,-!p8@ETV4!0.91!7.70!ETV4;;chr6:41703296..41703367,-!p1@TFEB!0.90!37.09!TFEB;;chr1:170633262..170633285,+!p3@PRRX1!0.90!8.05!PRRX1;;chr8:93074803..93074845,-!p1@RUNX1T1!0.90!7.00!RUNX1T1;;chr11:47279504..47279563,+!p1@NR1H3!0.89!15.75!NR1H3;;chr17:41623259..41623278,-!p7@ETV4!0.89!8.05!ETV4;;chr3:128206762..128206781,-!p2@GATA2!0.88!43.04!GATA2;;chr20:50721803..50721857,-!p2@ZFP64!0.88!10.50!ZFP64;;chr17:41622982..41623001,-!p11@ETV4!0.88!6.65!ETV4;;chr8:60031762..60031803,-!p3@TOX!0.87!9.45!TOX;;chr1:8483878..8483907,-!p4@RERE!0.86!25.55!RERE;;chr7:42276787..42276815,-!p1@GLI3!0.86!17.50!GLI3;;chr18:52969674..52969685,-!p24@TCF4!0.86!6.30!TCF4;;chr11:44331576..44331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| |expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.04!107.78!TCF21;;chr7:19157248..19157268,-!p1@TWIST1!1.94!228.16!TWIST1;;chr9:132427883..132427951,+!p2@PRRX2!1.91!79.79!PRRX2;;chr16:86544113..86544145,+!p1@FOXF1!1.87!89.23!FOXF1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.81!63.34!POU3F3;;chr9:132427972..132428056,+!p1@PRRX2!1.70!64.04!PRRX2;;chr2:239756671..239756732,+!p1@TWIST2!1.69!149.42!TWIST2;;chr9:129376233..129376251,+!p2@LMX1B!1.68!47.24!LMX1B;;chr5:2751762..2751784,-!p1@IRX2!1.63!41.64!IRX2;;chr6:50786591..50786614,+!p1@TFAP2B!1.63!41.29!TFAP2B;;chr4:111544219..111544240,-!p1@PITX2!1.62!40.24!PITX2;;chr6:34204921..34204939,+!p3@HMGA1!1.57!1027.41!HMGA1;;chr9:129376201..129376225,+!p1@LMX1B!1.57!36.04!LMX1B;;chr19:46801639..46801699,+!p1@HIF3A!1.56!35.69!HIF3A;;chr2:239756739..239756755,+!p2@TWIST2!1.50!51.09!TWIST2;;chr20:42543441..42543497,+!p1@TOX2!1.47!123.18!TOX2;;chr11:46299199..46299233,+!p1@CREB3L1!1.45!136.12!CREB3L1;;chr17:59477233..59477263,+!p1@TBX2!1.34!62.99!TBX2;;chr5:92918919..92918942,+!p1@NR2F1!1.33!89.58!NR2F1;;chr17:41622765..41622821,-!p2@ETV4!1.31!29.74!ETV4;;chr5:3595977..3595999,+!p1@IRX1!1.31!19.25!IRX1;;chr20:42543506..42543549,+!p2@TOX2!1.30!45.14!TOX2;;chr17:41622925..41622976,-!p3@ETV4!1.29!27.29!ETV4;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.29!19.95!GLIS1;;chr17:41623009..41623053,-!p4@ETV4!1.28!28.69!ETV4;;chr16:86600426..86600441,+!p1@FOXC2!1.27!43.04!FOXC2;;chr19:45260775..45260838,+!p5@BCL3!1.25!21.70!BCL3;;chr11:63684602..63684664,-!p1@RCOR2!1.23!31.14!RCOR2;;chr17:41623692..41623715,-!p1@ETV4!1.21!64.04!ETV4;;chr11:46299539..46299620,+!p2@CREB3L1!1.20!24.85!CREB3L1;;chr2:5832508..5832524,+!p1@SOX11!1.20!14.70!SOX11;;chr4:111558135..111558198,-!p2@PITX2!1.19!14.35!PITX2;;chr17:59477197..59477212,+!p2@TBX2!1.18!24.15!TBX2;;chr5:92918956..92918969,+!p4@NR2F1!1.18!15.40!NR2F1;;chr5:3595934..3595957,+!p2@IRX1!1.17!13.65!IRX1;;chr5:3595961..3595975,+!p3@IRX1!1.17!13.65!IRX1;;chr16:54320101..54320125,-!p4@IRX3!1.16!19.25!IRX3;;chr1:170633348..170633399,+!p2@PRRX1!1.16!18.20!PRRX1;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.16!13.30!POU3F3;;chr15:57511609..57511651,+!p2@TCF12!1.15!22.05!TCF12;;chr1:170632285..170632309,+!p1@PRRX1!1.15!14.70!PRRX1;;chr7:19157043..19157088,-!p2@TWIST1!1.12!30.44!TWIST1;;chr17:59477275..59477286,+!p3@TBX2!1.10!15.40!TBX2;;chr17:41622834..41622883,-!p6@ETV4!1.10!14.00!ETV4;;chr15:83953397..83953425,-!p1@BNC1!1.10!13.30!BNC1;;chr7:44143925..44143970,+!p1@AEBP1!1.08!246.70!AEBP1;;chr8:60031682..60031710,-!p2@TOX!1.08!17.85!TOX;;chr5:92919100..92919135,+!p3@NR2F1!1.08!13.30!NR2F1;;chr5:2751785..2751808,-!p2@IRX2!1.07!10.85!IRX2;;chr12:2986206..2986258,-!p2@FOXM1!1.06!63.34!FOXM1;;chr14:74256787..74256858,-!p6@C14orf43!1.05!10.15!C14orf43;;chr11:113930425..113930471,+!p1@ZBTB16!1.04!14.35!ZBTB16;;chr8:60031809..60031835,-!p4@TOX!1.04!12.60!TOX;;chr5:92918894..92918912,+!p2@NR2F1!1.03!32.54!NR2F1;;chr8:60031619..60031676,-!p1@TOX!1.03!21.35!TOX;;chr15:67418119..67418162,+!p5@SMAD3!1.03!10.85!SMAD3;;chr17:41622731..41622764,-!p5@ETV4!1.03!9.80!ETV4;;chr6:41701581..41701613,-!p2@TFEB!1.03!9.80!TFEB;;chr8:48650715..48650735,-!p1@CEBPD!1.02!1219.87!CEBPD;;chr6:1389789..1389821,+!p1@FOXF2!1.01!12.95!FOXF2;;chr9:77112244..77112262,+!p1@RORB!1.00!10.15!RORB;;chr17:46132044..46132080,+!p4@NFE2L1!1.00!9.10!NFE2L1;;chr17:17726907..17726958,-!p2@SREBF1!0.99!54.94!SREBF1;;chr12:66218255..66218304,+!p3@HMGA2!0.99!24.15!HMGA2;;chr1:164528687..164528711,+!p6@PBX1!0.99!10.15!PBX1;;chr6:50786571..50786590,+!p2@TFAP2B!0.99!8.75!TFAP2B;;chr8:93074848..93074871,-!p3@RUNX1T1!0.99!8.75!RUNX1T1;;chr19:49865646..49865718,-!p1@TEAD2!0.97!74.19!TEAD2;;chr6:41701557..41701578,-!p3@TFEB!0.97!8.40!TFEB;;chr16:54320158..54320200,-!p5@IRX3!0.96!11.90!IRX3;;chr5:92919068..92919082,+!p5@NR2F1!0.96!9.80!NR2F1;;chr19:46800289..46800327,+!p2@HIF3A!0.96!8.05!HIF3A;;chr16:54964899..54964914,+!p2@IRX5!0.94!7.70!IRX5;;chr4:111544254..111544270,-!p3@PITX2!0.94!7.70!PITX2;;chr6:50789717..50789729,+!p4@TFAP2B!0.94!7.70!TFAP2B;;chr5:176738887..176738934,-!p1@MXD3!0.92!50.39!MXD3;;chr21:47063625..47063658,+!p1@PCBP3!0.92!32.89!PCBP3;;chr20:42295713..42295738,+!p2@MYBL2!0.91!44.44!MYBL2;;chr17:1959369..1959388,+!p2@HIC1!0.91!19.60!HIC1;;chr17:41623667..41623682,-!p8@ETV4!0.91!7.70!ETV4;;chr6:41703296..41703367,-!p1@TFEB!0.90!37.09!TFEB;;chr1:170633262..170633285,+!p3@PRRX1!0.90!8.05!PRRX1;;chr8:93074803..93074845,-!p1@RUNX1T1!0.90!7.00!RUNX1T1;;chr11:47279504..47279563,+!p1@NR1H3!0.89!15.75!NR1H3;;chr17:41623259..41623278,-!p7@ETV4!0.89!8.05!ETV4;;chr3:128206762..128206781,-!p2@GATA2!0.88!43.04!GATA2;;chr20:50721803..50721857,-!p2@ZFP64!0.88!10.50!ZFP64;;chr17:41622982..41623001,-!p11@ETV4!0.88!6.65!ETV4;;chr8:60031762..60031803,-!p3@TOX!0.87!9.45!TOX;;chr1:8483878..8483907,-!p4@RERE!0.86!25.55!RERE;;chr7:42276787..42276815,-!p1@GLI3!0.86!17.50!GLI3;;chr18:52969674..52969685,-!p24@TCF4!0.86!6.30!TCF4;;chr11:44331576..44331650,-!p1@ALX4!0.86!6.30!ALX4;;chr16:54964740..54964789,+!p1@IRX5!0.85!9.10!IRX5;;chr16:73093174..73093209,-!p3@ZFHX3!0.85!8.40!ZFHX3;;chr5:92919375..92919438,+!p6@NR2F1!0.85!6.65!NR2F1;;chr14:75894714..75894733,+!p1@JDP2!0.84!179.52!JDP2;;chr3:185826855..185826911,-!p1@ETV5!0.84!172.87!ETV5;;chr3:52001448..52001478,-!p2@PCBP4!0.84!87.13!PCBP4;;chr5:321810..321877,+!p1@AHRR!0.84!19.95!AHRR;;chr3:12329358..12329393,+!p3@PPARG!0.84!15.40!PPARG;;chr19:49864746..49864780,-!p2@TEAD2!0.84!8.40!TEAD2;;chr2:105470614..105470625,+!p@chr2:105470614..105470625,+!0.84!5.95!POU3F3;;chr6:50786547..50786564,+!p3@TFAP2B!0.84!5.95!TFAP2B;;chr11:46299443..46299459,+!p4@CREB3L1!0.84!5.95!CREB3L1;;chr12:2986275..2986363,-!p1@FOXM1!0.83!61.94!FOXM1;;chr16:54320675..54320715,-!p1@IRX3!0.82!12.60!IRX3;;chr6:85474299..85474324,-!p1@TBX18!0.82!10.50!TBX18;;chr6:1312325..1312340,+!p1@FOXQ1!0.82!9.45!FOXQ1;;chr5:92920456..92920488,+!p9@NR2F1!0.82!6.65!NR2F1;;chr17:41623075..41623101,-!p9@ETV4!0.82!6.65!ETV4;;chr5:92918860..92918871,+!p10@NR2F1!0.82!6.30!NR2F1;;chr8:60031934..60031986,-!p6@TOX!0.82!5.60!TOX;;chr15:67418177..67418204,+!p9@SMAD3!0.82!5.60!SMAD3;;chr18:52969844..52969895,-!p27@TCF4!0.82!5.60!TCF4;;chr19:45251943..45252006,+!p1@BCL3!0.81!156.77!BCL3;;chr12:66218598..66218645,+!p2@HMGA2!0.81!27.29!HMGA2;;chr14:61116183..61116208,-!p1@SIX1!0.81!22.40!SIX1;;chr5:134369905..134369972,-!p1@PITX1!0.81!8.75!PITX1;;chr9:130954041..130954121,-!p2@CIZ1!0.80!24.85!CIZ1;;chr10:119302232..119302265,+!p1@EMX2!0.80!5.25!EMX2;;chr6:34204973..34204990,+!p4@HMGA1!0.79!75.59!HMGA1;;chr1:8763440..8763460,-!p2@RERE!0.79!27.99!RERE;;chr11:65667884..65667895,-!p2@FOSL1!0.79!21.35!FOSL1;;chr12:66218212..66218244,+!p5@HMGA2!0.79!7.70!HMGA2;;chr16:54320646..54320672,-!p2@IRX3!0.77!7.70!IRX3;;chr11:113930401..113930422,+!p3@ZBTB16!0.77!4.90!ZBTB16;;chr8:60031840..60031869,-!p5@TOX!0.77!4.90!TOX;;chr4:299227..299272,-!p1@ZNF732!0.77!4.90!ZNF732;;chr8:48650697..48650708,-!p2@CEBPD!0.76!39.54!CEBPD;;chr3:52001426..52001447,-!p3@PCBP4!0.76!14.35!PCBP4;;chr16:54320617..54320643,-!p3@IRX3!0.76!6.30!IRX3;;chr17:17740287..17740307,-!p1@SREBF1!0.75!135.07!SREBF1;;chr1:164528445..164528459,+!p2@PBX1!0.75!15.75!PBX1;;chr6:34204672..34204692,+!p1@HMGA1!0.74!569.69!HMGA1;;chr2:19558373..19558392,-!p1@OSR1!0.74!13.30!OSR1;;chr5:76383133..76383186,-!p2@ZBED3!0.74!9.80!ZBED3;;chr12:66218183..66218209,+!p4@HMGA2!0.74!9.10!HMGA2;;chr1:170632250..170632277,+!p7@PRRX1!0.74!4.55!PRRX1;;chr3:128212033..128212051,-!p1@GATA2!0.74!4.55!GATA2;;chr15:67391010..67391046,+!p13@SMAD3!0.74!4.55!SMAD3;;chr20:42295745..42295765,+!p1@MYBL2!0.73!80.83!MYBL2;;chr1:164528410..164528428,+!p1@PBX1!0.72!36.04!PBX1;;chr1:164528911..164528940,+!p7@PBX1!0.72!6.65!PBX1;;chr15:67418047..67418093,+!p4@SMAD3!0.72!5.60!SMAD3;;chr16:54319010..54319041,-!p8@IRX3!0.72!4.20!IRX3;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!0.72!4.20!MEF2B;;chr6:41562324..41562340,+!p16@FOXP4!0.72!4.20!FOXP4;;chr6:50786631..50786635,+!p11@TFAP2B!0.72!4.20!TFAP2B;;chr10:119302645..119302712,+!p3@EMX2!0.72!4.20!EMX2;;chr3:71179699..71179744,-!p2@FOXP1!0.71!34.64!FOXP1;;chr14:21994337..21994442,-!p1@SALL2!0.71!12.60!SALL2;;chrX:106960285..106960299,-!p1@TSC22D3!0.70!123.88!TSC22D3;;chr19:1592714..1592762,-!p1@MBD3!0.70!34.29!MBD3;;chr1:8483821..8483845,-!p11@RERE!0.70!8.75!RERE;;chr1:149858461..149858479,+!p1@BOLA1!0.69!1738.83!BOLA1;;chr19:3366570..3366619,+!p1@NFIC!0.69!142.77!NFIC;;chr3:12329397..12329433,+!p2@PPARG!0.69!9.80!PPARG;;chr1:164528942..164528964,+!p11@PBX1!0.69!3.85!PBX1;;chr6:50786479..50786490,+!p6@TFAP2B!0.69!3.85!TFAP2B;;chr16:54320127..54320148,-!p6@IRX3!0.69!3.85!IRX3;;chr10:119303078..119303169,+!p2@EMX2!0.69!3.85!EMX2;;chr14:73360799..73360817,-!p1@DPF3!0.68!14.70!DPF3;;chr7:42276822..42276895,-!p2@GLI3!0.68!12.60!GLI3;;chr1:164528616..164528660,+!p5@PBX1!0.68!8.40!PBX1;;chr5:178368186..178368238,+!p1@ZNF454!0.68!7.35!ZNF454;;chr6:35464817..35464894,-!p1@TEAD3!0.67!65.44!TEAD3;;chr12:53614115..53614154,-!p1@RARG!0.67!22.40!RARG;;chr17:38465413..38465438,+!p5@RARA!0.67!6.30!RARA;;chr20:55204351..55204377,+!p1@TFAP2C!0.67!4.90!TFAP2C;;chr11:46299186..46299195,+!p3@CREB3L1!0.67!4.20!CREB3L1;;chr1:8763296..8763339,-!p9@RERE!0.66!9.80!RERE;;chr17:3571887..3571918,-!p2@TAX1BP3!0.65!45.49!TAX1BP3;;chr20:306489..306564,+!p1@SOX12!0.65!43.74!SOX12;;chr19:13134457..13134462,+!p5@NFIX!0.65!6.65!NFIX;;chr16:86600870..86600921,+!p2@FOXC2!0.65!3.50!FOXC2;;chr19:1652575..1652621,-!p1@TCF3!0.64!151.87!TCF3;;chr1:8483756..8483809,-!p5@RERE!0.64!10.50!RERE;;chr1:8763463..8763499,-!p6@RERE!0.64!10.50!RERE;;chr8:48650982..48651023,-!p3@CEBPD!0.64!9.45!CEBPD;;chr14:24837368..24837401,+!p1@NFATC4!0.64!8.75!NFATC4;;chr17:46622440..46622477,-!p5@HOXB2!0.64!3.85!HOXB2;;chr22:29196547..29196563,-!p2@XBP1!0.63!144.17!XBP1;;chr12:7079780..7079791,-!p2@PHB2!0.63!19.95!PHB2;;chr17:38498594..38498661,+!p2@RARA!0.63!12.60!RARA;;chr7:44143978..44143989,+!p2@AEBP1!0.63!6.65!AEBP1;;chr19:45261550..45261641,+!p6@BCL3!0.63!5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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000115;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002367;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000970;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001768;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001801;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006876 | |||
|ffid_belonging_in_development=CL:0000222 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 36: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Trabecular%2520Meshwork%2520Cells%252c%2520donor3.CNhs12124.11693-123A1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Trabecular%2520Meshwork%2520Cells%252c%2520donor3.CNhs12124.11693-123A1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Trabecular%2520Meshwork%2520Cells%252c%2520donor3.CNhs12124.11693-123A1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Trabecular%2520Meshwork%2520Cells%252c%2520donor3.CNhs12124.11693-123A1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Trabecular%2520Meshwork%2520Cells%252c%2520donor3.CNhs12124.11693-123A1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11693-123A1 | |id=FF:11693-123A1 | ||
|is_a=EFO:0002091;;FF:0000188 | |is_a=EFO:0002091;;FF:0000188 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12124 | |||
|library_id_phase_based=2:CNhs12124 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11693 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11693 | |||
|name=Trabecular Meshwork Cells, donor3 | |name=Trabecular Meshwork Cells, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 44: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12124,LSID839,release011,COMPLETED | |profile_hcage=CNhs12124,LSID839,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10005,,, | |profile_srnaseq=SRhi10005,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,0.356475963916468,0.060435156136578,0,0,0,0,0,0,0,0,0,0,0,0.130312767515111,0,0.0770925560579639,0,0,0,0,0,0.213754474068198,0,0,0.178755780557393,0,0,0,0,0,0,0,0,0,0,0,0,0.373423398357145,0.0502942992464723,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.130312767515111,0,0.130312767515111,0,0.0333204062725055,0,0,0.282820360865568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0444471078916555,0.0465306046341419,0,0,0,0.109614681547363,0.0977959018289215,0,0,0,0,-0.0980353512377064,0.116761176995993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0.230415566406392,0,0,0.21343090828147,0.270486617334862,0,0,0.0175157516442565,0,0,0 | |||
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| |||
|rna_box=123 | |rna_box=123 | ||
|rna_catalog_number=SC6595 | |rna_catalog_number=SC6595 | ||
| Line 59: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=lot:3423 | |sample_cell_catalog=lot:3423 | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 80: | Line 101: | ||
|top_motifs=GTF2A1,2:1.88319841324;ZNF423:1.6818799586;TFAP4:1.67237905067;ESR1:1.536207049;ZNF238:1.53194260401;POU2F1..3:1.44316162061;XCPE1{core}:1.402022846;EBF1:1.320322602;SP1:1.17538765223;RXR{A,B,G}:1.16292902005;PBX1:1.07178223291;PATZ1:1.07094855925;NR5A1,2:1.03589606606;GLI1..3:1.0261479524;TFAP2{A,C}:0.999546902406;TFCP2:0.949873924412;GZF1:0.922634976702;ZIC1..3:0.897708154861;TAL1_TCF{3,4,12}:0.897689989086;HOX{A5,B5}:0.890312274165;ZNF148:0.872123218811;bHLH_family:0.840076089329;TLX1..3_NFIC{dimer}:0.801723953713;TFAP2B:0.777435980212;ALX4:0.747591321582;NFY{A,B,C}:0.727464230305;CEBPA,B_DDIT3:0.717577315991;TEAD1:0.70135205419;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.670559682472;GTF2I:0.644069072119;GFI1B:0.639916266916;HIC1:0.632636721909;GFI1:0.600372085306;NANOG{mouse}:0.574380034764;MZF1:0.573657396649;MTF1:0.5657974861;ZNF143:0.556525167788;TFDP1:0.539271733045;NR1H4:0.524599941535;YY1:0.491823176954;LHX3,4:0.464689729845;AR:0.461969050511;TOPORS:0.456187869073;EGR1..3:0.450091595387;RREB1:0.448126553165;NR3C1:0.431476192284;PAX5:0.417547635847;IKZF1:0.416977853028;ZBTB6:0.399373772998;MAZ:0.357690187308;POU5F1:0.354726423924;TBX4,5:0.342238764114;NR6A1:0.3236268043;RXRA_VDR{dimer}:0.32242726099;STAT5{A,B}:0.308506917372;SOX5:0.305265449813;SOX{8,9,10}:0.303733621375;HES1:0.30135870784;NFE2L2:0.301235238314;HNF4A_NR2F1,2:0.295033705464;SOX17:0.278434133816;XBP1:0.265833533745;FOX{I1,J2}:0.261453862185;TBP:0.25945648692;NFE2L1:0.256500211563;LEF1_TCF7_TCF7L1,2:0.245965904234;E2F1..5:0.230939172328;NKX3-1:0.23031051906;SRF:0.225849537615;REST:0.195266034735;TP53:0.1823538901;PAX8:0.152697426961;NKX2-3_NKX2-5:0.0820961398442;KLF4:0.0803040157467;SPZ1:0.0644073606976;NFE2:0.0562303293914;ATF6:0.0455832751802;PAX1,9:0.0263150006102;FOXD3:0.0100775171391;UFEwm:0.0067875744294;HNF1A:0.00140839814713;FOS_FOS{B,L1}_JUN{B,D}:-0.00620684009826;HAND1,2:-0.00621208698612;HLF:-0.0265228831727;BACH2:-0.0279184849064;MYBL2:-0.0302739751951;NKX2-2,8:-0.0396800381951;MED-1{core}:-0.0472643284175;ELK1,4_GABP{A,B1}:-0.0505234297416;CRX:-0.063610217744;RORA:-0.0669451871603;MYOD1:-0.0808639901399;NFIX:-0.0819412876568;ATF4:-0.0830921955153;ESRRA:-0.0871210461793;RFX1:-0.0892226775238;ONECUT1,2:-0.108103005461;MYB:-0.116315520798;LMO2:-0.132059164195;HMX1:-0.147143274304;NFATC1..3:-0.16784581846;EN1,2:-0.168242472254;HOXA9_MEIS1:-0.185385911025;FOSL2:-0.186849289157;NRF1:-0.189248054777;FOXQ1:-0.197316539805;NHLH1,2:-0.205968959929;PAX3,7:-0.249950913139;GCM1,2:-0.250304340063;POU3F1..4:-0.250754637756;POU1F1:-0.255358839349;HOX{A6,A7,B6,B7}:-0.263292028703;MEF2{A,B,C,D}:-0.278758954815;ZNF384:-0.308979880795;FOXL1:-0.314092159228;ARID5B:-0.316102641587;NFKB1_REL_RELA:-0.316418221153;PRRX1,2:-0.318359376457;FOX{F1,F2,J1}:-0.324083717821;BREu{core}:-0.327698531875;STAT2,4,6:-0.336776264846;MTE{core}:-0.354333251483;RUNX1..3:-0.355422047081;EP300:-0.370393245843;MYFfamily:-0.371923777854;AHR_ARNT_ARNT2:-0.388653273413;POU6F1:-0.393527060639;STAT1,3:-0.396405953163;PPARG:-0.403359293215;CUX2:-0.416624714924;GATA6:-0.419056676394;CREB1:-0.42489341898;ZFP161:-0.429480476118;ETS1,2:-0.433875982767;SPI1:-0.443759414667;VSX1,2:-0.459088590474;NANOG:-0.460592071073;SNAI1..3:-0.465447448604;AIRE:-0.472962505845;T:-0.473966385063;DBP:-0.484753480237;TEF:-0.505140951232;JUN:-0.505158683568;ADNP_IRX_SIX_ZHX:-0.522976303346;SPIB:-0.527467641344;PAX4:-0.588744340912;TGIF1:-0.588903588983;ATF2:-0.59283300586;CDC5L:-0.593525932606;NFIL3:-0.608842348737;ELF1,2,4:-0.615842105305;NKX2-1,4:-0.630480914165;HBP1_HMGB_SSRP1_UBTF:-0.648625082006;OCT4_SOX2{dimer}:-0.653345476858;ZEB1:-0.682193043223;GATA4:-0.686759021838;PRDM1:-0.69424039109;SOX2:-0.706131620793;PAX6:-0.742890769903;HOX{A4,D4}:-0.756419884867;TLX2:-0.767059246466;PITX1..3:-0.792081551189;FOXP3:-0.792387384033;HIF1A:-0.816103273848;IRF1,2:-0.841510425591;FOX{D1,D2}:-0.85251321385;CDX1,2,4:-0.853417011344;MAFB:-0.864657939444;FOXO1,3,4:-0.866724787008;IRF7:-0.871600573778;EVI1:-0.878943514171;ATF5_CREB3:-0.905445714422;FOXA2:-0.907747072873;RFX2..5_RFXANK_RFXAP:-0.92682512945;PAX2:-0.932200164283;DMAP1_NCOR{1,2}_SMARC:-0.942639504806;NKX6-1,2:-0.977255743723;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.02455400912;HSF1,2:-1.07361644255;SREBF1,2:-1.07432878486;FOXM1:-1.0754424274;ALX1:-1.12412290867;FOXP1:-1.13285203942;SMAD1..7,9:-1.13407465457;BPTF:-1.19288642352;NKX3-2:-1.21335786677;RBPJ:-1.29414480061;PDX1:-1.31085114066;HMGA1,2:-1.48745099724;IKZF2:-1.90877199914;ZBTB16:-1.96462020608;FOXN1:-2.15546703955 | |top_motifs=GTF2A1,2:1.88319841324;ZNF423:1.6818799586;TFAP4:1.67237905067;ESR1:1.536207049;ZNF238:1.53194260401;POU2F1..3:1.44316162061;XCPE1{core}:1.402022846;EBF1:1.320322602;SP1:1.17538765223;RXR{A,B,G}:1.16292902005;PBX1:1.07178223291;PATZ1:1.07094855925;NR5A1,2:1.03589606606;GLI1..3:1.0261479524;TFAP2{A,C}:0.999546902406;TFCP2:0.949873924412;GZF1:0.922634976702;ZIC1..3:0.897708154861;TAL1_TCF{3,4,12}:0.897689989086;HOX{A5,B5}:0.890312274165;ZNF148:0.872123218811;bHLH_family:0.840076089329;TLX1..3_NFIC{dimer}:0.801723953713;TFAP2B:0.777435980212;ALX4:0.747591321582;NFY{A,B,C}:0.727464230305;CEBPA,B_DDIT3:0.717577315991;TEAD1:0.70135205419;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.670559682472;GTF2I:0.644069072119;GFI1B:0.639916266916;HIC1:0.632636721909;GFI1:0.600372085306;NANOG{mouse}:0.574380034764;MZF1:0.573657396649;MTF1:0.5657974861;ZNF143:0.556525167788;TFDP1:0.539271733045;NR1H4:0.524599941535;YY1:0.491823176954;LHX3,4:0.464689729845;AR:0.461969050511;TOPORS:0.456187869073;EGR1..3:0.450091595387;RREB1:0.448126553165;NR3C1:0.431476192284;PAX5:0.417547635847;IKZF1:0.416977853028;ZBTB6:0.399373772998;MAZ:0.357690187308;POU5F1:0.354726423924;TBX4,5:0.342238764114;NR6A1:0.3236268043;RXRA_VDR{dimer}:0.32242726099;STAT5{A,B}:0.308506917372;SOX5:0.305265449813;SOX{8,9,10}:0.303733621375;HES1:0.30135870784;NFE2L2:0.301235238314;HNF4A_NR2F1,2:0.295033705464;SOX17:0.278434133816;XBP1:0.265833533745;FOX{I1,J2}:0.261453862185;TBP:0.25945648692;NFE2L1:0.256500211563;LEF1_TCF7_TCF7L1,2:0.245965904234;E2F1..5:0.230939172328;NKX3-1:0.23031051906;SRF:0.225849537615;REST:0.195266034735;TP53:0.1823538901;PAX8:0.152697426961;NKX2-3_NKX2-5:0.0820961398442;KLF4:0.0803040157467;SPZ1:0.0644073606976;NFE2:0.0562303293914;ATF6:0.0455832751802;PAX1,9:0.0263150006102;FOXD3:0.0100775171391;UFEwm:0.0067875744294;HNF1A:0.00140839814713;FOS_FOS{B,L1}_JUN{B,D}:-0.00620684009826;HAND1,2:-0.00621208698612;HLF:-0.0265228831727;BACH2:-0.0279184849064;MYBL2:-0.0302739751951;NKX2-2,8:-0.0396800381951;MED-1{core}:-0.0472643284175;ELK1,4_GABP{A,B1}:-0.0505234297416;CRX:-0.063610217744;RORA:-0.0669451871603;MYOD1:-0.0808639901399;NFIX:-0.0819412876568;ATF4:-0.0830921955153;ESRRA:-0.0871210461793;RFX1:-0.0892226775238;ONECUT1,2:-0.108103005461;MYB:-0.116315520798;LMO2:-0.132059164195;HMX1:-0.147143274304;NFATC1..3:-0.16784581846;EN1,2:-0.168242472254;HOXA9_MEIS1:-0.185385911025;FOSL2:-0.186849289157;NRF1:-0.189248054777;FOXQ1:-0.197316539805;NHLH1,2:-0.205968959929;PAX3,7:-0.249950913139;GCM1,2:-0.250304340063;POU3F1..4:-0.250754637756;POU1F1:-0.255358839349;HOX{A6,A7,B6,B7}:-0.263292028703;MEF2{A,B,C,D}:-0.278758954815;ZNF384:-0.308979880795;FOXL1:-0.314092159228;ARID5B:-0.316102641587;NFKB1_REL_RELA:-0.316418221153;PRRX1,2:-0.318359376457;FOX{F1,F2,J1}:-0.324083717821;BREu{core}:-0.327698531875;STAT2,4,6:-0.336776264846;MTE{core}:-0.354333251483;RUNX1..3:-0.355422047081;EP300:-0.370393245843;MYFfamily:-0.371923777854;AHR_ARNT_ARNT2:-0.388653273413;POU6F1:-0.393527060639;STAT1,3:-0.396405953163;PPARG:-0.403359293215;CUX2:-0.416624714924;GATA6:-0.419056676394;CREB1:-0.42489341898;ZFP161:-0.429480476118;ETS1,2:-0.433875982767;SPI1:-0.443759414667;VSX1,2:-0.459088590474;NANOG:-0.460592071073;SNAI1..3:-0.465447448604;AIRE:-0.472962505845;T:-0.473966385063;DBP:-0.484753480237;TEF:-0.505140951232;JUN:-0.505158683568;ADNP_IRX_SIX_ZHX:-0.522976303346;SPIB:-0.527467641344;PAX4:-0.588744340912;TGIF1:-0.588903588983;ATF2:-0.59283300586;CDC5L:-0.593525932606;NFIL3:-0.608842348737;ELF1,2,4:-0.615842105305;NKX2-1,4:-0.630480914165;HBP1_HMGB_SSRP1_UBTF:-0.648625082006;OCT4_SOX2{dimer}:-0.653345476858;ZEB1:-0.682193043223;GATA4:-0.686759021838;PRDM1:-0.69424039109;SOX2:-0.706131620793;PAX6:-0.742890769903;HOX{A4,D4}:-0.756419884867;TLX2:-0.767059246466;PITX1..3:-0.792081551189;FOXP3:-0.792387384033;HIF1A:-0.816103273848;IRF1,2:-0.841510425591;FOX{D1,D2}:-0.85251321385;CDX1,2,4:-0.853417011344;MAFB:-0.864657939444;FOXO1,3,4:-0.866724787008;IRF7:-0.871600573778;EVI1:-0.878943514171;ATF5_CREB3:-0.905445714422;FOXA2:-0.907747072873;RFX2..5_RFXANK_RFXAP:-0.92682512945;PAX2:-0.932200164283;DMAP1_NCOR{1,2}_SMARC:-0.942639504806;NKX6-1,2:-0.977255743723;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.02455400912;HSF1,2:-1.07361644255;SREBF1,2:-1.07432878486;FOXM1:-1.0754424274;ALX1:-1.12412290867;FOXP1:-1.13285203942;SMAD1..7,9:-1.13407465457;BPTF:-1.19288642352;NKX3-2:-1.21335786677;RBPJ:-1.29414480061;PDX1:-1.31085114066;HMGA1,2:-1.48745099724;IKZF2:-1.90877199914;ZBTB16:-1.96462020608;FOXN1:-2.15546703955 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11693-123A1;search_select_hide=table117:FF:11693-123A1 | |||
}} | }} | ||
Latest revision as of 18:15, 4 June 2020
| Name: | Trabecular Meshwork Cells, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12124 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12124
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12124
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0889 |
| 10 | 10 | 0.0416 |
| 100 | 100 | 0.436 |
| 101 | 101 | 0.0895 |
| 102 | 102 | 0.895 |
| 103 | 103 | 0.103 |
| 104 | 104 | 0.201 |
| 105 | 105 | 0.243 |
| 106 | 106 | 0.881 |
| 107 | 107 | 0.257 |
| 108 | 108 | 0.372 |
| 109 | 109 | 0.579 |
| 11 | 11 | 0.74 |
| 110 | 110 | 0.397 |
| 111 | 111 | 0.026 |
| 112 | 112 | 0.393 |
| 113 | 113 | 0.214 |
| 114 | 114 | 0.0393 |
| 115 | 115 | 0.294 |
| 116 | 116 | 0.526 |
| 117 | 117 | 0.976 |
| 118 | 118 | 0.639 |
| 119 | 119 | 0.224 |
| 12 | 12 | 0.775 |
| 120 | 120 | 0.354 |
| 121 | 121 | 0.806 |
| 122 | 122 | 0.589 |
| 123 | 123 | 2.97115e-4 |
| 124 | 124 | 0.148 |
| 125 | 125 | 0.178 |
| 126 | 126 | 0.872 |
| 127 | 127 | 0.405 |
| 128 | 128 | 0.668 |
| 129 | 129 | 0.549 |
| 13 | 13 | 0.591 |
| 130 | 130 | 0.00993 |
| 131 | 131 | 0.75 |
| 132 | 132 | 0.228 |
| 133 | 133 | 0.142 |
| 134 | 134 | 0.832 |
| 135 | 135 | 0.145 |
| 136 | 136 | 0.203 |
| 137 | 137 | 0.00981 |
| 138 | 138 | 0.0974 |
| 139 | 139 | 0.0126 |
| 14 | 14 | 0.623 |
| 140 | 140 | 0.294 |
| 141 | 141 | 0.272 |
| 142 | 142 | 0.193 |
| 143 | 143 | 0.466 |
| 144 | 144 | 0.939 |
| 145 | 145 | 0.929 |
| 146 | 146 | 0.283 |
| 147 | 147 | 0.997 |
| 148 | 148 | 0.0544 |
| 149 | 149 | 0.965 |
| 15 | 15 | 0.0925 |
| 150 | 150 | 0.275 |
| 151 | 151 | 0.95 |
| 152 | 152 | 0.0693 |
| 153 | 153 | 0.315 |
| 154 | 154 | 0.0772 |
| 155 | 155 | 0.298 |
| 156 | 156 | 0.845 |
| 157 | 157 | 0.617 |
| 158 | 158 | 0.0329 |
| 159 | 159 | 0.988 |
| 16 | 16 | 0.999 |
| 160 | 160 | 0.332 |
| 161 | 161 | 0.764 |
| 162 | 162 | 0.0933 |
| 163 | 163 | 0.696 |
| 164 | 164 | 0.708 |
| 165 | 165 | 0.0158 |
| 166 | 166 | 0.815 |
| 167 | 167 | 0.0391 |
| 168 | 168 | 0.756 |
| 169 | 169 | 0.295 |
| 17 | 17 | 0.99 |
| 18 | 18 | 0.862 |
| 19 | 19 | 0.361 |
| 2 | 2 | 0.462 |
| 20 | 20 | 0.994 |
| 21 | 21 | 0.679 |
| 22 | 22 | 0.216 |
| 23 | 23 | 0.388 |
| 24 | 24 | 0.746 |
| 25 | 25 | 0.0643 |
| 26 | 26 | 0.427 |
| 27 | 27 | 0.917 |
| 28 | 28 | 0.106 |
| 29 | 29 | 0.602 |
| 3 | 3 | 0.346 |
| 30 | 30 | 0.163 |
| 31 | 31 | 0.627 |
| 32 | 32 | 0.0034 |
| 33 | 33 | 0.654 |
| 34 | 34 | 0.324 |
| 35 | 35 | 0.268 |
| 36 | 36 | 0.197 |
| 37 | 37 | 0.932 |
| 38 | 38 | 0.744 |
| 39 | 39 | 0.916 |
| 4 | 4 | 0.969 |
| 40 | 40 | 0.287 |
| 41 | 41 | 0.146 |
| 42 | 42 | 0.263 |
| 43 | 43 | 0.48 |
| 44 | 44 | 0.425 |
| 45 | 45 | 0.238 |
| 46 | 46 | 0.673 |
| 47 | 47 | 0.803 |
| 48 | 48 | 0.641 |
| 49 | 49 | 0.223 |
| 5 | 5 | 0.095 |
| 50 | 50 | 0.366 |
| 51 | 51 | 0.989 |
| 52 | 52 | 0.629 |
| 53 | 53 | 0.221 |
| 54 | 54 | 0.865 |
| 55 | 55 | 0.449 |
| 56 | 56 | 0.788 |
| 57 | 57 | 0.262 |
| 58 | 58 | 0.0254 |
| 59 | 59 | 0.147 |
| 6 | 6 | 0.519 |
| 60 | 60 | 0.396 |
| 61 | 61 | 0.895 |
| 62 | 62 | 0.021 |
| 63 | 63 | 0.999 |
| 64 | 64 | 0.665 |
| 65 | 65 | 0.567 |
| 66 | 66 | 0.275 |
| 67 | 67 | 0.353 |
| 68 | 68 | 0.0124 |
| 69 | 69 | 0.316 |
| 7 | 7 | 0.172 |
| 70 | 70 | 0.563 |
| 71 | 71 | 0.0948 |
| 72 | 72 | 0.364 |
| 73 | 73 | 0.0151 |
| 74 | 74 | 0.385 |
| 75 | 75 | 0.768 |
| 76 | 76 | 0.318 |
| 77 | 77 | 0.534 |
| 78 | 78 | 0.35 |
| 79 | 79 | 0.782 |
| 8 | 8 | 0.982 |
| 80 | 80 | 0.589 |
| 81 | 81 | 0.375 |
| 82 | 82 | 0.209 |
| 83 | 83 | 0.44 |
| 84 | 84 | 0.866 |
| 85 | 85 | 0.599 |
| 86 | 86 | 0.823 |
| 87 | 87 | 0.0919 |
| 88 | 88 | 0.361 |
| 89 | 89 | 0.927 |
| 9 | 9 | 0.379 |
| 90 | 90 | 0.00369 |
| 91 | 91 | 0.368 |
| 92 | 92 | 0.203 |
| 93 | 93 | 0.275 |
| 94 | 94 | 0.251 |
| 95 | 95 | 0.196 |
| 96 | 96 | 0.337 |
| 97 | 97 | 0.963 |
| 98 | 98 | 0.67 |
| 99 | 99 | 0.00332 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12124
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0002367 (trabecular meshwork cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000970 (eye)
0000019 (camera-type eye)
0000033 (head)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000020 (sense organ)
0002203 (vasculature of eye)
0001768 (uvea)
0001032 (sensory system)
0002049 (vasculature)
0002200 (vasculature of head)
0006876 (vasculature of organ)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0005969 (reticulum trabeculare)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0004535 (cardiovascular system)
0002104 (visual system)
0001801 (anterior segment of eyeball)
0004456 (entire sense organ system)
0001456 (face)
0010230 (eyeball of camera-type eye)
0001009 (circulatory system)
0003956 (aqueous drainage system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000188 (human trabecular meshwork cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)
