FF:14314-155D3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005133 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005133!sRNA-Seq@SAMD00005133 | ||
|accession_numbers=CAGE;DRX008044;DRR008916;DRZ000341;DRZ001726;DRZ011691;DRZ013076 | |||
|accession_numbers_RNASeq=RNA-Seq;DRX057106;DRR062865;DRZ007941!sRNA-Seq;DRX036987;DRR041353;DRZ006995 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001135,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0002385,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0004237,UBERON:0004695,UBERON:0002049,UBERON:0010317,UBERON:0002111,UBERON:0007798,UBERON:0001015,UBERON:0004178,UBERON:0002204,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0000383,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002539 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000408,FF:0000350,FF:0000168,FF:0000406,FF:0000672 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0%2520%2528nuclear%2520fraction%2529.CNhs12402.14314-155D3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0%2520%2528nuclear%2520fraction%2529.CNhs12402.14314-155D3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0%2520%2528nuclear%2520fraction%2529.CNhs12402.14314-155D3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0%2520%2528nuclear%2520fraction%2529.CNhs12402.14314-155D3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0%2520%2528nuclear%2520fraction%2529.CNhs12402.14314-155D3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:14314-155D3 | |id=FF:14314-155D3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000672 | ||
|is_obsolete= | |||
|library_id=CNhs12402 | |||
|library_id_phase_based=2:CNhs12402 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;14314 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10015.GATCAG.14314 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;14314 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10015.GATCAG.14314 | |||
|name=Smooth Muscle Cells - Aortic, donor0 (nuclear fraction) | |name=Smooth Muscle Cells - Aortic, donor0 (nuclear fraction) | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 64: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12402,LSID914,release011,COMPLETED | |profile_hcage=CNhs12402,LSID914,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10015,,, | |profile_srnaseq=SRhi10015,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,-0.277362132193514,0.891675216818577,0,0,0,0,0,0,0,0,0,0,0,0.212087596895138,0,-0.0344592366491854,0,0,0,0,0,1.45767056936177,0,0,0.573979608125268,0,0,0,0,0,0,0,0,0,0,0,0,-0.127330724602691,0.757561909936318,0.410618958450486,0,0,0,0,0,0,0.0352168657367868,0,0,0,0.212087596895138,0,0,0.118863773699242,0.609943836661525,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.212087596895138,0,0,0,0,0,0,0,0,0,0,0,0.118863773699242,0,0,0,0.00924023139154795,0.16547568529719,0,0,-0.0584468268118252,0.261339554051563,0,0.353964173178025,0.230364306206681,0,0.0208284224615359,0.55984681519939,0,0,0,0,0,0,0.50565000137777,0,0,0,0,0,0,0,0,0,0,0.156451406766424,0,0,0,-0.0954388822399226,-0.262618960738363,0,0,0.288793885560305,0,0,0 | |||
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| |||
|rna_box=155 | |rna_box=155 | ||
|rna_catalog_number=CA354-R10a | |rna_catalog_number=CA354-R10a | ||
| Line 56: | Line 81: | ||
|rna_tube_id=155D3 | |rna_tube_id=155D3 | ||
|rna_weight_ug=57.2166 | |rna_weight_ug=57.2166 | ||
|rnaseq_library_id=RDhi10006!SRhi10015.GATCAG | |||
|sample_age=54 | |sample_age=54 | ||
|sample_category=fractionations and perturbations | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 96: | ||
|sample_ethnicity=A | |sample_ethnicity=A | ||
|sample_experimental_condition=nuclear RNA | |sample_experimental_condition=nuclear RNA | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.20296971958807e-254!GO:0005737;cytoplasm;1.00561816794003e-150!GO:0043231;intracellular membrane-bound organelle;3.94162356809454e-132!GO:0043227;membrane-bound organelle;8.57476090109573e-132!GO:0043226;organelle;8.03942532462746e-131!GO:0043229;intracellular organelle;1.09569796824084e-130!GO:0044444;cytoplasmic part;2.29905516750257e-124!GO:0044422;organelle part;3.75424167397792e-102!GO:0044446;intracellular organelle part;7.06636484457513e-101!GO:0005515;protein binding;1.15473489905409e-62!GO:0044238;primary metabolic process;2.29387853689166e-62!GO:0044237;cellular metabolic process;1.80044008957174e-58!GO:0032991;macromolecular complex;1.43453111075135e-56!GO:0043170;macromolecule metabolic process;4.77632497711624e-56!GO:0031090;organelle membrane;1.8874059882567e-55!GO:0043233;organelle lumen;1.96005389270134e-50!GO:0031974;membrane-enclosed lumen;1.96005389270134e-50!GO:0003723;RNA binding;2.72631284414638e-49!GO:0030529;ribonucleoprotein complex;5.36690453073272e-48!GO:0044428;nuclear part;7.14531773933511e-47!GO:0019538;protein metabolic process;2.70251006982307e-44!GO:0015031;protein transport;2.35118513881032e-39!GO:0033036;macromolecule localization;5.6192952212752e-39!GO:0044260;cellular macromolecule metabolic process;5.63165869566502e-39!GO:0044267;cellular protein metabolic process;3.21908710693133e-38!GO:0045184;establishment of protein localization;8.02441225444699e-37!GO:0008104;protein localization;5.4589748058297e-36!GO:0005783;endoplasmic reticulum;2.30570959447148e-35!GO:0016043;cellular component organization and biogenesis;6.60035837273803e-35!GO:0005739;mitochondrion;3.69434949229183e-34!GO:0005634;nucleus;1.38605261019067e-33!GO:0009058;biosynthetic process;1.99490914056669e-33!GO:0006396;RNA processing;8.35991084021609e-33!GO:0046907;intracellular transport;1.7104079926913e-32!GO:0006412;translation;4.54711655898387e-32!GO:0012505;endomembrane system;6.93779452689229e-31!GO:0009059;macromolecule biosynthetic process;4.9101714235892e-30!GO:0031981;nuclear lumen;1.94865040897445e-29!GO:0044432;endoplasmic reticulum part;4.80740283041238e-29!GO:0043234;protein complex;6.44023185709943e-29!GO:0016071;mRNA metabolic process;9.27078837871513e-28!GO:0005829;cytosol;2.07256534036542e-27!GO:0006886;intracellular protein transport;3.38643035667871e-27!GO:0044249;cellular biosynthetic process;1.84034858825439e-26!GO:0031967;organelle envelope;3.10186791661577e-26!GO:0005840;ribosome;3.19825648933952e-26!GO:0031975;envelope;6.11312732853856e-26!GO:0043283;biopolymer metabolic process;9.76663869934615e-25!GO:0005794;Golgi apparatus;1.46522097986287e-24!GO:0044429;mitochondrial part;2.80628125560796e-24!GO:0008380;RNA splicing;7.37472579589994e-24!GO:0006397;mRNA processing;1.54903074535683e-23!GO:0003735;structural constituent of ribosome;1.98530651834663e-23!GO:0033279;ribosomal subunit;6.14963353453442e-22!GO:0010467;gene expression;1.91051848949033e-21!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.69125474855995e-21!GO:0051649;establishment of cellular localization;2.3246124424454e-20!GO:0006457;protein folding;2.87441133857256e-20!GO:0051641;cellular localization;3.20509361311864e-20!GO:0005789;endoplasmic reticulum membrane;4.17428109093229e-20!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.30580307650535e-19!GO:0016462;pyrophosphatase activity;1.97612251672828e-19!GO:0048770;pigment granule;2.03794552758403e-19!GO:0042470;melanosome;2.03794552758403e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.38243262393801e-19!GO:0000166;nucleotide binding;3.04629051095952e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;3.15641341267746e-19!GO:0017111;nucleoside-triphosphatase activity;4.35164595194933e-19!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.27279094270655e-18!GO:0065003;macromolecular complex assembly;1.87213255391793e-18!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.89733404133566e-18!GO:0005654;nucleoplasm;7.12939301573915e-18!GO:0022607;cellular component assembly;9.41794563577828e-17!GO:0006996;organelle organization and biogenesis;9.54321381170546e-17!GO:0005740;mitochondrial envelope;1.62198770903755e-16!GO:0048193;Golgi vesicle transport;2.51164839874556e-16!GO:0005681;spliceosome;5.99978283390719e-16!GO:0031966;mitochondrial membrane;8.46465876270149e-16!GO:0044445;cytosolic part;5.47540330762967e-15!GO:0044451;nucleoplasm part;6.56625468021988e-15!GO:0006119;oxidative phosphorylation;8.36674582040712e-15!GO:0005793;ER-Golgi intermediate compartment;8.97416154806177e-15!GO:0016192;vesicle-mediated transport;9.72037391175238e-15!GO:0019866;organelle inner membrane;1.31478400775245e-14!GO:0016874;ligase activity;1.59271134726636e-14!GO:0051082;unfolded protein binding;5.33794491787026e-14!GO:0008134;transcription factor binding;1.20446385819521e-13!GO:0017076;purine nucleotide binding;2.61203989714517e-13!GO:0005743;mitochondrial inner membrane;4.0250088538774e-13!GO:0006605;protein targeting;5.47441479949033e-13!GO:0032553;ribonucleotide binding;7.85335904608953e-13!GO:0032555;purine ribonucleotide binding;7.85335904608953e-13!GO:0044265;cellular macromolecule catabolic process;1.0036518806189e-12!GO:0043285;biopolymer catabolic process;2.56880993015307e-12!GO:0006512;ubiquitin cycle;4.62661797595176e-12!GO:0016887;ATPase activity;4.87595227690795e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;4.91468072342941e-12!GO:0008135;translation factor activity, nucleic acid binding;4.93199212492837e-12!GO:0005730;nucleolus;5.1803202449581e-12!GO:0009057;macromolecule catabolic process;6.51620228212148e-12!GO:0005788;endoplasmic reticulum lumen;6.86106666146814e-12!GO:0044431;Golgi apparatus part;7.15474964447269e-12!GO:0006511;ubiquitin-dependent protein catabolic process;7.98313252395065e-12!GO:0044257;cellular protein catabolic process;8.18083078872019e-12!GO:0030554;adenyl nucleotide binding;8.70672929188948e-12!GO:0005524;ATP binding;9.75750563297773e-12!GO:0022618;protein-RNA complex assembly;9.76889848382907e-12!GO:0019941;modification-dependent protein catabolic process;1.03935343188155e-11!GO:0043632;modification-dependent macromolecule catabolic process;1.03935343188155e-11!GO:0030163;protein catabolic process;1.68344996017907e-11!GO:0032559;adenyl ribonucleotide binding;1.77471838277848e-11!GO:0044455;mitochondrial membrane part;2.08219903300048e-11!GO:0015934;large ribosomal subunit;2.52157235109652e-11!GO:0043228;non-membrane-bound organelle;2.58007954566146e-11!GO:0043232;intracellular non-membrane-bound organelle;2.58007954566146e-11!GO:0015935;small ribosomal subunit;2.95922875938972e-11!GO:0000502;proteasome complex (sensu Eukaryota);3.67104640461465e-11!GO:0042623;ATPase activity, coupled;5.01247799190952e-11!GO:0043412;biopolymer modification;6.40617617487024e-11!GO:0006259;DNA metabolic process;9.20163200662272e-11!GO:0051186;cofactor metabolic process;9.33170672668311e-11!GO:0005773;vacuole;1.3740335066908e-10!GO:0044248;cellular catabolic process;2.18812314912552e-10!GO:0031965;nuclear membrane;2.40166104602421e-10!GO:0005635;nuclear envelope;2.57862852212112e-10!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.63509061764984e-10!GO:0006464;protein modification process;7.72863942924873e-10!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);8.4952996646713e-10!GO:0004386;helicase activity;8.84621614522293e-10!GO:0005746;mitochondrial respiratory chain;8.87327500391267e-10!GO:0031980;mitochondrial lumen;9.30503137974512e-10!GO:0005759;mitochondrial matrix;9.30503137974512e-10!GO:0003712;transcription cofactor activity;1.11456709222038e-09!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.83308430609791e-09!GO:0000139;Golgi membrane;1.95238356215159e-09!GO:0000323;lytic vacuole;2.00893147193572e-09!GO:0005764;lysosome;2.00893147193572e-09!GO:0006888;ER to Golgi vesicle-mediated transport;2.31965776376985e-09!GO:0044453;nuclear membrane part;3.54927443226557e-09!GO:0008565;protein transporter activity;4.22321918779279e-09!GO:0003743;translation initiation factor activity;5.90408731242398e-09!GO:0003676;nucleic acid binding;6.30161130104749e-09!GO:0008026;ATP-dependent helicase activity;6.69645816324756e-09!GO:0006913;nucleocytoplasmic transport;6.74353719512312e-09!GO:0016787;hydrolase activity;8.87401809468296e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;8.96577413454496e-09!GO:0000375;RNA splicing, via transesterification reactions;8.96577413454496e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.96577413454496e-09!GO:0051169;nuclear transport;1.16033438933216e-08!GO:0050136;NADH dehydrogenase (quinone) activity;1.3585605171035e-08!GO:0003954;NADH dehydrogenase activity;1.3585605171035e-08!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.3585605171035e-08!GO:0016604;nuclear body;1.4264044465575e-08!GO:0006732;coenzyme metabolic process;1.45421961416035e-08!GO:0009259;ribonucleotide metabolic process;1.80617142143403e-08!GO:0048523;negative regulation of cellular process;1.8766737361282e-08!GO:0016070;RNA metabolic process;1.98754470248136e-08!GO:0005768;endosome;2.2446150021071e-08!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.27076870917926e-08!GO:0030120;vesicle coat;2.39096554019475e-08!GO:0030662;coated vesicle membrane;2.39096554019475e-08!GO:0007049;cell cycle;3.17894713574407e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.87673803648245e-08!GO:0006413;translational initiation;6.16526667697402e-08!GO:0006163;purine nucleotide metabolic process;6.46970201380993e-08!GO:0009150;purine ribonucleotide metabolic process;7.09892093820878e-08!GO:0006461;protein complex assembly;8.50680874193055e-08!GO:0006446;regulation of translational initiation;9.17711695122338e-08!GO:0048475;coated membrane;1.23100168248445e-07!GO:0030117;membrane coat;1.23100168248445e-07!GO:0008639;small protein conjugating enzyme activity;1.31702822843326e-07!GO:0004842;ubiquitin-protein ligase activity;1.54683401134537e-07!GO:0042775;organelle ATP synthesis coupled electron transport;1.60957180468011e-07!GO:0042773;ATP synthesis coupled electron transport;1.60957180468011e-07!GO:0012501;programmed cell death;1.71086489223906e-07!GO:0019787;small conjugating protein ligase activity;1.71086489223906e-07!GO:0008654;phospholipid biosynthetic process;1.71086489223906e-07!GO:0016607;nuclear speck;1.81255154733157e-07!GO:0030964;NADH dehydrogenase complex (quinone);1.82271983877408e-07!GO:0045271;respiratory chain complex I;1.82271983877408e-07!GO:0005747;mitochondrial respiratory chain complex I;1.82271983877408e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.95710893832408e-07!GO:0009260;ribonucleotide biosynthetic process;2.03098528172956e-07!GO:0006164;purine nucleotide biosynthetic process;2.07557560729163e-07!GO:0009152;purine ribonucleotide biosynthetic process;2.18519085785649e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.18519085785649e-07!GO:0006974;response to DNA damage stimulus;2.22683969883514e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.88592054532458e-07!GO:0004812;aminoacyl-tRNA ligase activity;2.88592054532458e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.88592054532458e-07!GO:0016023;cytoplasmic membrane-bound vesicle;2.91522235374147e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.92071821292276e-07!GO:0006915;apoptosis;3.0188588262866e-07!GO:0031988;membrane-bound vesicle;3.20438231326393e-07!GO:0043038;amino acid activation;3.26797322895685e-07!GO:0006418;tRNA aminoacylation for protein translation;3.26797322895685e-07!GO:0043039;tRNA aminoacylation;3.26797322895685e-07!GO:0043687;post-translational protein modification;3.38418770567504e-07!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.72117556472513e-07!GO:0009199;ribonucleoside triphosphate metabolic process;3.76746900546209e-07!GO:0042254;ribosome biogenesis and assembly;4.14596124321868e-07!GO:0006399;tRNA metabolic process;4.32680534730158e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.62681302190328e-07!GO:0048519;negative regulation of biological process;6.46401130638991e-07!GO:0008219;cell death;6.60032530654903e-07!GO:0016265;death;6.60032530654903e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.69880142402314e-07!GO:0009144;purine nucleoside triphosphate metabolic process;6.69880142402314e-07!GO:0009141;nucleoside triphosphate metabolic process;7.66384656499388e-07!GO:0005798;Golgi-associated vesicle;7.73061111744916e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;8.08038059137317e-07!GO:0015986;ATP synthesis coupled proton transport;8.08038059137317e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;8.08038059137317e-07!GO:0031410;cytoplasmic vesicle;8.23458478184151e-07!GO:0031982;vesicle;8.66251696424094e-07!GO:0009055;electron carrier activity;1.03258284379929e-06!GO:0003714;transcription corepressor activity;1.15207200118912e-06!GO:0016881;acid-amino acid ligase activity;1.26587494487731e-06!GO:0019829;cation-transporting ATPase activity;1.50825066499634e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.54117561141602e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.54117561141602e-06!GO:0005770;late endosome;1.70335671929063e-06!GO:0005643;nuclear pore;1.70335671929063e-06!GO:0009056;catabolic process;2.00388100592784e-06!GO:0051789;response to protein stimulus;2.02968840777294e-06!GO:0006986;response to unfolded protein;2.02968840777294e-06!GO:0017038;protein import;2.14374135904595e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.7545334027089e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.7545334027089e-06!GO:0046034;ATP metabolic process;2.82410965482362e-06!GO:0009060;aerobic respiration;2.85488603000981e-06!GO:0044440;endosomal part;3.32173351843369e-06!GO:0010008;endosome membrane;3.32173351843369e-06!GO:0022402;cell cycle process;3.32173351843369e-06!GO:0016740;transferase activity;3.63464543771564e-06!GO:0051726;regulation of cell cycle;6.65420920535428e-06!GO:0000074;regulation of progression through cell cycle;6.83478786508435e-06!GO:0045333;cellular respiration;7.80252901665721e-06!GO:0009117;nucleotide metabolic process;7.9426178682982e-06!GO:0051246;regulation of protein metabolic process;8.45832658011839e-06!GO:0006281;DNA repair;8.72395022107816e-06!GO:0006754;ATP biosynthetic process;1.06444454686173e-05!GO:0006753;nucleoside phosphate metabolic process;1.06444454686173e-05!GO:0030133;transport vesicle;1.09001529151084e-05!GO:0015078;hydrogen ion transmembrane transporter activity;1.11704337374807e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.22944579914227e-05!GO:0065002;intracellular protein transport across a membrane;1.23065831367015e-05!GO:0006403;RNA localization;1.28653996523182e-05!GO:0016564;transcription repressor activity;1.30928456609619e-05!GO:0051188;cofactor biosynthetic process;1.34397734141254e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.43736713383787e-05!GO:0016491;oxidoreductase activity;1.43736713383787e-05!GO:0031252;leading edge;1.53244703602499e-05!GO:0050657;nucleic acid transport;1.70696645955571e-05!GO:0051236;establishment of RNA localization;1.70696645955571e-05!GO:0050658;RNA transport;1.70696645955571e-05!GO:0046930;pore complex;1.82988140023041e-05!GO:0030176;integral to endoplasmic reticulum membrane;1.93961678704603e-05!GO:0009719;response to endogenous stimulus;2.39141757212404e-05!GO:0051187;cofactor catabolic process;2.64213392907223e-05!GO:0044262;cellular carbohydrate metabolic process;2.64958427946174e-05!GO:0006366;transcription from RNA polymerase II promoter;2.81944906929885e-05!GO:0006613;cotranslational protein targeting to membrane;2.82882312121853e-05!GO:0005761;mitochondrial ribosome;2.82882312121853e-05!GO:0000313;organellar ribosome;2.82882312121853e-05!GO:0033116;ER-Golgi intermediate compartment membrane;2.89571419382347e-05!GO:0006099;tricarboxylic acid cycle;3.03231370187042e-05!GO:0046356;acetyl-CoA catabolic process;3.03231370187042e-05!GO:0005905;coated pit;3.18021261522505e-05!GO:0043069;negative regulation of programmed cell death;3.23472247615902e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;3.31728831053821e-05!GO:0003924;GTPase activity;3.90942646341371e-05!GO:0003724;RNA helicase activity;4.17803318684117e-05!GO:0043566;structure-specific DNA binding;4.23427470742282e-05!GO:0051170;nuclear import;4.27878879208679e-05!GO:0009109;coenzyme catabolic process;4.34241424468302e-05!GO:0016859;cis-trans isomerase activity;4.37236772998243e-05!GO:0006606;protein import into nucleus;4.41341064809333e-05!GO:0046474;glycerophospholipid biosynthetic process;4.54710363432938e-05!GO:0016853;isomerase activity;4.90129058913333e-05!GO:0043066;negative regulation of apoptosis;5.56364491533803e-05!GO:0045786;negative regulation of progression through cell cycle;6.25711154106473e-05!GO:0030867;rough endoplasmic reticulum membrane;6.40490283358395e-05!GO:0006916;anti-apoptosis;6.40490283358395e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;6.7736302659203e-05!GO:0015399;primary active transmembrane transporter activity;6.7736302659203e-05!GO:0046467;membrane lipid biosynthetic process;6.96721792454229e-05!GO:0006752;group transfer coenzyme metabolic process;7.22837671759135e-05!GO:0046489;phosphoinositide biosynthetic process;7.73607162855031e-05!GO:0050794;regulation of cellular process;8.22698484441971e-05!GO:0016568;chromatin modification;8.39125955615598e-05!GO:0031324;negative regulation of cellular metabolic process;8.55572652497856e-05!GO:0045454;cell redox homeostasis;8.81494030118364e-05!GO:0043067;regulation of programmed cell death;9.97224289101408e-05!GO:0004576;oligosaccharyl transferase activity;0.000103672564017001!GO:0006084;acetyl-CoA metabolic process;0.00010949448481665!GO:0031968;organelle outer membrane;0.000122138763914682!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000122964845834064!GO:0005667;transcription factor complex;0.000126977272276107!GO:0042981;regulation of apoptosis;0.000131369394001507!GO:0000151;ubiquitin ligase complex;0.000148810908583781!GO:0009108;coenzyme biosynthetic process;0.000151120907161283!GO:0003697;single-stranded DNA binding;0.000155871479292104!GO:0019867;outer membrane;0.000175564850253934!GO:0032446;protein modification by small protein conjugation;0.000177172749860222!GO:0045259;proton-transporting ATP synthase complex;0.000181344113773719!GO:0030532;small nuclear ribonucleoprotein complex;0.000181554337731143!GO:0008250;oligosaccharyl transferase complex;0.000193119774000324!GO:0051028;mRNA transport;0.000198003454586096!GO:0006612;protein targeting to membrane;0.000207963929560979!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000208554775537091!GO:0008361;regulation of cell size;0.000213476512758115!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000218124034146568!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000219036210850115!GO:0006260;DNA replication;0.000228030923345009!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000245342614884263!GO:0005048;signal sequence binding;0.00025226432143754!GO:0016567;protein ubiquitination;0.000254323141367756!GO:0016049;cell growth;0.000261934070468303!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000270356101881375!GO:0007040;lysosome organization and biogenesis;0.000276830296534198!GO:0001558;regulation of cell growth;0.000335533271545476!GO:0019843;rRNA binding;0.000349775121509913!GO:0030663;COPI coated vesicle membrane;0.000350656402963227!GO:0030126;COPI vesicle coat;0.000350656402963227!GO:0030134;ER to Golgi transport vesicle;0.000353339581085525!GO:0005791;rough endoplasmic reticulum;0.000360709244268092!GO:0008610;lipid biosynthetic process;0.000364382684629659!GO:0003713;transcription coactivator activity;0.000370370993738274!GO:0009892;negative regulation of metabolic process;0.000384751796429488!GO:0000245;spliceosome assembly;0.000453654802977171!GO:0018196;peptidyl-asparagine modification;0.000519052765024095!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000519052765024095!GO:0006364;rRNA processing;0.000563540302758238!GO:0006497;protein amino acid lipidation;0.000571098533457593!GO:0015980;energy derivation by oxidation of organic compounds;0.000585166181753168!GO:0000278;mitotic cell cycle;0.000587485626237584!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.000622159901252137!GO:0005769;early endosome;0.000672533129426801!GO:0043492;ATPase activity, coupled to movement of substances;0.00067455922497002!GO:0006891;intra-Golgi vesicle-mediated transport;0.000699019521164135!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000706068352754811!GO:0044420;extracellular matrix part;0.000706068352754811!GO:0007033;vacuole organization and biogenesis;0.000706349698218353!GO:0030036;actin cytoskeleton organization and biogenesis;0.000706349698218353!GO:0015630;microtubule cytoskeleton;0.00072031450812767!GO:0007005;mitochondrion organization and biogenesis;0.00074837717883921!GO:0004177;aminopeptidase activity;0.00074837717883921!GO:0019899;enzyme binding;0.000749483745863572!GO:0005813;centrosome;0.000771461014215161!GO:0016072;rRNA metabolic process;0.000829417212178931!GO:0006506;GPI anchor biosynthetic process;0.000843444588801343!GO:0006325;establishment and/or maintenance of chromatin architecture;0.000852090858284689!GO:0005839;proteasome core complex (sensu Eukaryota);0.000857161373129862!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000916702651110017!GO:0046519;sphingoid metabolic process;0.000917016326046745!GO:0043623;cellular protein complex assembly;0.000938681739164595!GO:0006650;glycerophospholipid metabolic process;0.00100895910320551!GO:0006505;GPI anchor metabolic process;0.0010305999884878!GO:0030137;COPI-coated vesicle;0.00108269392575857!GO:0016197;endosome transport;0.00121989019147532!GO:0019798;procollagen-proline dioxygenase activity;0.00124018730261777!GO:0016563;transcription activator activity;0.0012803893501305!GO:0009165;nucleotide biosynthetic process;0.0012803893501305!GO:0030127;COPII vesicle coat;0.00128227327794647!GO:0012507;ER to Golgi transport vesicle membrane;0.00128227327794647!GO:0031543;peptidyl-proline dioxygenase activity;0.00128227327794647!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.0013702230514752!GO:0005741;mitochondrial outer membrane;0.00138464925667567!GO:0045045;secretory pathway;0.00141015220573822!GO:0008186;RNA-dependent ATPase activity;0.00142294816535498!GO:0051427;hormone receptor binding;0.00145798552738428!GO:0016044;membrane organization and biogenesis;0.001460561092975!GO:0006323;DNA packaging;0.00149513363466252!GO:0006414;translational elongation;0.00155825951628432!GO:0043284;biopolymer biosynthetic process;0.00157595992580434!GO:0006672;ceramide metabolic process;0.00158141312486716!GO:0005885;Arp2/3 protein complex;0.00167188236254624!GO:0006509;membrane protein ectodomain proteolysis;0.00183621694224587!GO:0033619;membrane protein proteolysis;0.00183621694224587!GO:0005815;microtubule organizing center;0.00184347425178586!GO:0030658;transport vesicle membrane;0.00189187152984104!GO:0006091;generation of precursor metabolites and energy;0.00189371797911118!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00194738103852447!GO:0003729;mRNA binding;0.00205502243334498!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00205523772592314!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00205523772592314!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00206227801756134!GO:0051920;peroxiredoxin activity;0.00211387192169261!GO:0051276;chromosome organization and biogenesis;0.00212863763232759!GO:0042158;lipoprotein biosynthetic process;0.00224176053478651!GO:0003690;double-stranded DNA binding;0.00233021966400934!GO:0016310;phosphorylation;0.00235103657586779!GO:0035257;nuclear hormone receptor binding;0.0023596672595585!GO:0005774;vacuolar membrane;0.00242832938233584!GO:0006643;membrane lipid metabolic process;0.00251760145992185!GO:0006793;phosphorus metabolic process;0.00261301711924934!GO:0006796;phosphate metabolic process;0.00261301711924934!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00278844232773922!GO:0051168;nuclear export;0.00288880884459468!GO:0008047;enzyme activator activity;0.00293513585619567!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.0031036839223543!GO:0043021;ribonucleoprotein binding;0.00314403401283088!GO:0006984;ER-nuclear signaling pathway;0.00325736883084088!GO:0005975;carbohydrate metabolic process;0.00329010314708131!GO:0031418;L-ascorbic acid binding;0.00337685857259918!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00345799307726825!GO:0050789;regulation of biological process;0.00359918525723473!GO:0007050;cell cycle arrest;0.00364160402886925!GO:0004004;ATP-dependent RNA helicase activity;0.00364160402886925!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00364660822194517!GO:0001726;ruffle;0.00364972749129357!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.00375789698041072!GO:0004298;threonine endopeptidase activity;0.00384113696560419!GO:0016481;negative regulation of transcription;0.00387383555947612!GO:0030132;clathrin coat of coated pit;0.00387702775783161!GO:0006892;post-Golgi vesicle-mediated transport;0.00388135980621091!GO:0007243;protein kinase cascade;0.00391212577747332!GO:0030029;actin filament-based process;0.00396199888033064!GO:0016779;nucleotidyltransferase activity;0.00408031428315259!GO:0030659;cytoplasmic vesicle membrane;0.00408031428315259!GO:0030384;phosphoinositide metabolic process;0.00436614367295817!GO:0030660;Golgi-associated vesicle membrane;0.00440359070172303!GO:0031072;heat shock protein binding;0.00462599692999432!GO:0000059;protein import into nucleus, docking;0.00470287624947981!GO:0030118;clathrin coat;0.00486076048013087!GO:0044433;cytoplasmic vesicle part;0.0050796146586981!GO:0009967;positive regulation of signal transduction;0.00510066585978831!GO:0016363;nuclear matrix;0.00518766312279437!GO:0048471;perinuclear region of cytoplasm;0.0051921912864474!GO:0048500;signal recognition particle;0.00541644832077799!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00582471788147482!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0058761189482716!GO:0051252;regulation of RNA metabolic process;0.00598269048348339!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00599818327427785!GO:0006818;hydrogen transport;0.00612033972898894!GO:0048522;positive regulation of cellular process;0.00616552606189569!GO:0044437;vacuolar part;0.00650564697445859!GO:0008484;sulfuric ester hydrolase activity;0.00656994021656169!GO:0000030;mannosyltransferase activity;0.00658143096644326!GO:0005525;GTP binding;0.00659197307548785!GO:0015992;proton transport;0.006605791395602!GO:0005581;collagen;0.00683884689459038!GO:0032940;secretion by cell;0.00694227801671378!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00722530783323984!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0073024220564291!GO:0030521;androgen receptor signaling pathway;0.00762417044823715!GO:0017166;vinculin binding;0.00793820857585282!GO:0031301;integral to organelle membrane;0.0080308547936075!GO:0030027;lamellipodium;0.00842682645384668!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00844476147373596!GO:0006950;response to stress;0.00854561507532397!GO:0001666;response to hypoxia;0.00877773505284664!GO:0003923;GPI-anchor transamidase activity;0.00893980887385657!GO:0016255;attachment of GPI anchor to protein;0.00893980887385657!GO:0042765;GPI-anchor transamidase complex;0.00893980887385657!GO:0031902;late endosome membrane;0.00909246150125501!GO:0065009;regulation of a molecular function;0.00919552990079479!GO:0007010;cytoskeleton organization and biogenesis;0.00927538936056545!GO:0003678;DNA helicase activity;0.00937557411308658!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00943703600161189!GO:0040008;regulation of growth;0.00974110604415201!GO:0031124;mRNA 3'-end processing;0.00995970156683199!GO:0005765;lysosomal membrane;0.0100426789983354!GO:0006897;endocytosis;0.0103078238554044!GO:0010324;membrane invagination;0.0103078238554044!GO:0015923;mannosidase activity;0.0104193474937024!GO:0012506;vesicle membrane;0.0104758045682683!GO:0019752;carboxylic acid metabolic process;0.0104758045682683!GO:0007034;vacuolar transport;0.0114037246567942!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0115021901495588!GO:0045047;protein targeting to ER;0.0115021901495588!GO:0001527;microfibril;0.0116317660834493!GO:0007041;lysosomal transport;0.0120395198788053!GO:0006022;aminoglycan metabolic process;0.0120737134420354!GO:0007160;cell-matrix adhesion;0.0121587048269604!GO:0003746;translation elongation factor activity;0.0121998888814924!GO:0050662;coenzyme binding;0.0122790825533129!GO:0006378;mRNA polyadenylation;0.0122890451524806!GO:0003756;protein disulfide isomerase activity;0.0125821115491886!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0125821115491886!GO:0006082;organic acid metabolic process;0.0125864584452015!GO:0004287;prolyl oligopeptidase activity;0.0127264264396993!GO:0000049;tRNA binding;0.0128112106901691!GO:0008139;nuclear localization sequence binding;0.0129042689952183!GO:0030433;ER-associated protein catabolic process;0.0131731187813368!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0131731187813368!GO:0032561;guanyl ribonucleotide binding;0.0134497597379835!GO:0019001;guanyl nucleotide binding;0.0134497597379835!GO:0045792;negative regulation of cell size;0.0135222180317664!GO:0016860;intramolecular oxidoreductase activity;0.0137119913097316!GO:0008092;cytoskeletal protein binding;0.0139879700974733!GO:0030308;negative regulation of cell growth;0.0144265957310063!GO:0031589;cell-substrate adhesion;0.014930402660225!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0152800820670481!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0152800820670481!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0152800820670481!GO:0031625;ubiquitin protein ligase binding;0.0154312413826148!GO:0006607;NLS-bearing substrate import into nucleus;0.0154913723157598!GO:0042802;identical protein binding;0.0161047379894136!GO:0016126;sterol biosynthetic process;0.0161793232125617!GO:0006458;'de novo' protein folding;0.0166343867116853!GO:0051084;'de novo' posttranslational protein folding;0.0166343867116853!GO:0035258;steroid hormone receptor binding;0.0169557715925567!GO:0007030;Golgi organization and biogenesis;0.0172472646512908!GO:0030149;sphingolipid catabolic process;0.0175131956359769!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0176864847768168!GO:0022890;inorganic cation transmembrane transporter activity;0.017948955908331!GO:0006665;sphingolipid metabolic process;0.018536396624407!GO:0046483;heterocycle metabolic process;0.0188321040239109!GO:0004563;beta-N-acetylhexosaminidase activity;0.0191311518824795!GO:0022408;negative regulation of cell-cell adhesion;0.0194269742647299!GO:0005637;nuclear inner membrane;0.0196676293415742!GO:0003711;transcription elongation regulator activity;0.0196676293415742!GO:0008312;7S RNA binding;0.0207752071176071!GO:0030203;glycosaminoglycan metabolic process;0.0207752071176071!GO:0000339;RNA cap binding;0.0208162511703194!GO:0050681;androgen receptor binding;0.0220464278476963!GO:0015631;tubulin binding;0.0220464278476963!GO:0005862;muscle thin filament tropomyosin;0.0223287274586718!GO:0048487;beta-tubulin binding;0.0223287274586718!GO:0030032;lamellipodium biogenesis;0.0223287274586718!GO:0030119;AP-type membrane coat adaptor complex;0.022716964603173!GO:0001516;prostaglandin biosynthetic process;0.0228163717174526!GO:0046457;prostanoid biosynthetic process;0.0228163717174526!GO:0006644;phospholipid metabolic process;0.0228733496822091!GO:0030968;unfolded protein response;0.0231209587336681!GO:0031123;RNA 3'-end processing;0.0235189137591528!GO:0006402;mRNA catabolic process;0.0235189137591528!GO:0006383;transcription from RNA polymerase III promoter;0.0243180780406391!GO:0005832;chaperonin-containing T-complex;0.0245728689929206!GO:0031901;early endosome membrane;0.0252498206423507!GO:0030518;steroid hormone receptor signaling pathway;0.0256892198689327!GO:0033559;unsaturated fatty acid metabolic process;0.025847749133962!GO:0006636;unsaturated fatty acid biosynthetic process;0.025847749133962!GO:0006007;glucose catabolic process;0.0259762728496323!GO:0033673;negative regulation of kinase activity;0.0259762728496323!GO:0006469;negative regulation of protein kinase activity;0.0259762728496323!GO:0005604;basement membrane;0.0259940181754198!GO:0005096;GTPase activator activity;0.0263081365414769!GO:0006740;NADPH regeneration;0.0272256036005209!GO:0006098;pentose-phosphate shunt;0.0272256036005209!GO:0000087;M phase of mitotic cell cycle;0.0273255272873244!GO:0051348;negative regulation of transferase activity;0.0274472132693073!GO:0005801;cis-Golgi network;0.0274472132693073!GO:0009225;nucleotide-sugar metabolic process;0.0275708102318946!GO:0030145;manganese ion binding;0.0279317874296792!GO:0006807;nitrogen compound metabolic process;0.0279374128420677!GO:0005762;mitochondrial large ribosomal subunit;0.0279374128420677!GO:0000315;organellar large ribosomal subunit;0.0279374128420677!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0291353099134718!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0291353099134718!GO:0005586;collagen type III;0.0295485494104213!GO:0019377;glycolipid catabolic process;0.029786404951217!GO:0043433;negative regulation of transcription factor activity;0.0302666723134392!GO:0004228;gelatinase A activity;0.0306230421162548!GO:0001955;blood vessel maturation;0.0306230421162548!GO:0007067;mitosis;0.0307852032498609!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0316194668151463!GO:0006693;prostaglandin metabolic process;0.0316454135187642!GO:0006692;prostanoid metabolic process;0.0316454135187642!GO:0006261;DNA-dependent DNA replication;0.0316454135187642!GO:0001952;regulation of cell-matrix adhesion;0.03200081453239!GO:0004559;alpha-mannosidase activity;0.0320252354524372!GO:0031529;ruffle organization and biogenesis;0.0320327875703777!GO:0030131;clathrin adaptor complex;0.0320458446163017!GO:0030125;clathrin vesicle coat;0.0323645915140834!GO:0030665;clathrin coated vesicle membrane;0.0323645915140834!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0325790506239066!GO:0022403;cell cycle phase;0.0326959075832027!GO:0006417;regulation of translation;0.0326961230549911!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0335599920381977!GO:0000209;protein polyubiquitination;0.0337453579119546!GO:0045926;negative regulation of growth;0.0352232779664385!GO:0044255;cellular lipid metabolic process;0.0352314509526225!GO:0005869;dynactin complex;0.0352951939557501!GO:0004003;ATP-dependent DNA helicase activity;0.0366327103635182!GO:0009308;amine metabolic process;0.0366327103635182!GO:0051329;interphase of mitotic cell cycle;0.0380220808331712!GO:0006769;nicotinamide metabolic process;0.038914594952144!GO:0008147;structural constituent of bone;0.0391199139091163!GO:0019511;peptidyl-proline hydroxylation;0.0391873810362806!GO:0018208;peptidyl-proline modification;0.0391873810362806!GO:0019471;4-hydroxyproline metabolic process;0.0391873810362806!GO:0018401;peptidyl-proline hydroxylation to 4-hydroxy-L-proline;0.0391873810362806!GO:0008234;cysteine-type peptidase activity;0.0392168457998855!GO:0006739;NADP metabolic process;0.0402463350329736!GO:0051085;chaperone cofactor-dependent protein folding;0.0406854331556512!GO:0003899;DNA-directed RNA polymerase activity;0.0408014769396792!GO:0006516;glycoprotein catabolic process;0.0411702190169233!GO:0009889;regulation of biosynthetic process;0.0424667650410021!GO:0043488;regulation of mRNA stability;0.0425348567862988!GO:0043487;regulation of RNA stability;0.0425348567862988!GO:0006289;nucleotide-excision repair;0.0425348567862988!GO:0001573;ganglioside metabolic process;0.0433477202385984!GO:0051052;regulation of DNA metabolic process;0.0439020325859018!GO:0006518;peptide metabolic process;0.0439178881746372!GO:0006626;protein targeting to mitochondrion;0.0442649020350899!GO:0005684;U2-dependent spliceosome;0.0443051498392552!GO:0006508;proteolysis;0.0446610539660121!GO:0001953;negative regulation of cell-matrix adhesion;0.044828466575132!GO:0006352;transcription initiation;0.0453088321267202!GO:0000096;sulfur amino acid metabolic process;0.045642797333382!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0461090472988533!GO:0048144;fibroblast proliferation;0.0461090472988533!GO:0048145;regulation of fibroblast proliferation;0.0461090472988533!GO:0004720;protein-lysine 6-oxidase activity;0.0462047290968475!GO:0006520;amino acid metabolic process;0.0464307017246465!GO:0008238;exopeptidase activity;0.0477284575631128!GO:0003684;damaged DNA binding;0.0478855986742745!GO:0006595;polyamine metabolic process;0.0484070736862477!GO:0048037;cofactor binding;0.048427056130791!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.048427056130791!GO:0051301;cell division;0.0488747773203834!GO:0009112;nucleobase metabolic process;0.0491437257898518!GO:0007162;negative regulation of cell adhesion;0.0498275879050103!GO:0043631;RNA polyadenylation;0.0499479875602371 | |||
|sample_id=14314 | |sample_id=14314 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 104: | ||
|sample_tissue=aorta | |sample_tissue=aorta | ||
|top_motifs=HIF1A:4.11679056413;EN1,2:3.26468870705;NKX3-1:2.83773815293;NFE2L1:2.49952210274;XBP1:2.42601316587;ALX4:2.37124270617;TAL1_TCF{3,4,12}:2.26418590754;HOX{A5,B5}:2.23348827722;HMX1:1.93579292696;ESR1:1.91526760554;GZF1:1.8994666725;NKX3-2:1.81260988754;KLF4:1.65753666759;RXRA_VDR{dimer}:1.64758863175;GLI1..3:1.63783832809;TEAD1:1.63086414453;HSF1,2:1.5904883054;EVI1:1.57256444612;UFEwm:1.57237533482;GCM1,2:1.5488950126;HMGA1,2:1.472268473;MYBL2:1.44060254605;MAFB:1.37067813036;SPZ1:1.35726033647;EP300:1.32608196354;ZBTB6:1.29914702667;ATF6:1.28312709892;TEF:1.26741334352;AHR_ARNT_ARNT2:1.222349691;TBX4,5:1.20475419935;NKX2-1,4:1.12062080631;PPARG:1.10758748824;RXR{A,B,G}:1.09891921016;SRF:1.08731085386;FOXL1:1.08009270467;GATA4:1.0756903079;HLF:1.07388389828;ZNF384:1.06570052703;EBF1:1.05278210685;FOX{I1,J2}:1.05202052772;TLX1..3_NFIC{dimer}:1.02309557722;HOX{A4,D4}:1.01710113763;XCPE1{core}:0.993757970204;SOX17:0.985391125479;PRDM1:0.940722928395;TP53:0.931056218151;NFATC1..3:0.901885088459;IKZF1:0.883344048164;MTE{core}:0.841385179833;MYFfamily:0.813519366322;NANOG{mouse}:0.808865563382;GTF2A1,2:0.792480598255;MZF1:0.784050029707;SMAD1..7,9:0.78013828542;GTF2I:0.740514740163;FOXN1:0.735085847627;TOPORS:0.716664453658;HES1:0.692174731543;ZIC1..3:0.685183605264;ZNF238:0.677691889463;DBP:0.675096092409;NFE2L2:0.65624775262;ELK1,4_GABP{A,B1}:0.633530138999;SP1:0.611006431758;HOX{A6,A7,B6,B7}:0.581373598724;NR3C1:0.572238843609;CEBPA,B_DDIT3:0.529480402683;MAZ:0.527892033136;TFAP4:0.495309937388;CREB1:0.491928351849;PAX4:0.490400857968;ARID5B:0.490079151932;TLX2:0.44942441765;HAND1,2:0.444206736188;bHLH_family:0.421119113972;FOSL2:0.419484628466;PAX8:0.41944277025;BACH2:0.404247014643;PATZ1:0.399576152657;FOS_FOS{B,L1}_JUN{B,D}:0.396876979571;PAX5:0.395503099254;AIRE:0.393645282006;PAX1,9:0.382294254897;ZFP161:0.372891305527;PAX3,7:0.343023564042;GFI1B:0.338299014289;TFAP2B:0.275304412893;NKX2-2,8:0.256868997135;PAX2:0.254543096896;POU3F1..4:0.254269067068;TBP:0.252087131696;HOXA9_MEIS1:0.235380697157;MED-1{core}:0.222064143656;RREB1:0.218013201955;NRF1:0.217328274792;ADNP_IRX_SIX_ZHX:0.180020984746;TFCP2:0.178953314408;ATF4:0.151026182149;TFAP2{A,C}:0.14490297805;HIC1:0.144845245797;ZNF143:0.141438910151;ZBTB16:0.123370894419;SREBF1,2:0.114965717107;LHX3,4:0.0919087433723;NFE2:0.0774755463478;AR:0.039545368911;MYB:0.0259531963107;ZNF423:0.00794638738289;NFIX:0.0021209822401;NHLH1,2:-0.00842666941353;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0290580879835;BPTF:-0.0573680954623;ATF5_CREB3:-0.0770910685172;ZNF148:-0.0775185260475;ATF2:-0.0838721850013;HNF1A:-0.0961279438427;CDC5L:-0.100518230695;SOX2:-0.129762988504;RFX1:-0.22186572347;LMO2:-0.241941670289;RUNX1..3:-0.243819000966;REST:-0.247586489762;FOX{D1,D2}:-0.264652817163;STAT1,3:-0.282049725358;MEF2{A,B,C,D}:-0.29097574977;ONECUT1,2:-0.303601822781;JUN:-0.309123274846;LEF1_TCF7_TCF7L1,2:-0.321811034904;FOXD3:-0.390198822214;HBP1_HMGB_SSRP1_UBTF:-0.39198122105;IRF1,2:-0.398391216918;ETS1,2:-0.436348372313;CRX:-0.437323244213;POU6F1:-0.449564478668;NFKB1_REL_RELA:-0.450115370113;GFI1:-0.458929135474;ELF1,2,4:-0.472125699224;STAT2,4,6:-0.482791444151;YY1:-0.484873162172;SOX5:-0.492349274999;SPI1:-0.516306597923;FOXP1:-0.544263887297;EGR1..3:-0.545004809888;STAT5{A,B}:-0.589731762482;TFDP1:-0.635297240912;HNF4A_NR2F1,2:-0.644429929357;IRF7:-0.657263671275;TGIF1:-0.666391237458;NR1H4:-0.683949270004;ALX1:-0.69956280136;PRRX1,2:-0.715765040493;SOX{8,9,10}:-0.72690273831;SPIB:-0.759402015601;MTF1:-0.773824092185;GATA6:-0.775644978991;T:-0.784672025561;NFIL3:-0.803865125284;NFY{A,B,C}:-0.807085400751;E2F1..5:-0.808244897832;POU1F1:-0.839615881135;POU5F1:-0.849314491685;ZEB1:-0.868836110497;VSX1,2:-0.872581259196;FOXO1,3,4:-0.903978990159;PAX6:-0.904741869838;FOXA2:-0.919195532831;PDX1:-0.951881763192;SNAI1..3:-0.991825419833;CDX1,2,4:-1.01349114901;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.05006673256;RORA:-1.0506683996;PBX1:-1.08374927757;DMAP1_NCOR{1,2}_SMARC:-1.0882425754;RFX2..5_RFXANK_RFXAP:-1.10376306834;ESRRA:-1.19008877058;NANOG:-1.19263342775;FOXP3:-1.21188066755;RBPJ:-1.23202051241;NKX6-1,2:-1.24024744548;POU2F1..3:-1.27591741374;PITX1..3:-1.29064349311;NR6A1:-1.42162210151;IKZF2:-1.4241822431;FOXM1:-1.43045697902;CUX2:-1.44431520031;NKX2-3_NKX2-5:-1.54075737263;MYOD1:-1.5701840697;OCT4_SOX2{dimer}:-1.57924408194;BREu{core}:-1.63912484476;NR5A1,2:-1.74386878774;FOX{F1,F2,J1}:-1.83757761773;FOXQ1:-2.00240905396 | |top_motifs=HIF1A:4.11679056413;EN1,2:3.26468870705;NKX3-1:2.83773815293;NFE2L1:2.49952210274;XBP1:2.42601316587;ALX4:2.37124270617;TAL1_TCF{3,4,12}:2.26418590754;HOX{A5,B5}:2.23348827722;HMX1:1.93579292696;ESR1:1.91526760554;GZF1:1.8994666725;NKX3-2:1.81260988754;KLF4:1.65753666759;RXRA_VDR{dimer}:1.64758863175;GLI1..3:1.63783832809;TEAD1:1.63086414453;HSF1,2:1.5904883054;EVI1:1.57256444612;UFEwm:1.57237533482;GCM1,2:1.5488950126;HMGA1,2:1.472268473;MYBL2:1.44060254605;MAFB:1.37067813036;SPZ1:1.35726033647;EP300:1.32608196354;ZBTB6:1.29914702667;ATF6:1.28312709892;TEF:1.26741334352;AHR_ARNT_ARNT2:1.222349691;TBX4,5:1.20475419935;NKX2-1,4:1.12062080631;PPARG:1.10758748824;RXR{A,B,G}:1.09891921016;SRF:1.08731085386;FOXL1:1.08009270467;GATA4:1.0756903079;HLF:1.07388389828;ZNF384:1.06570052703;EBF1:1.05278210685;FOX{I1,J2}:1.05202052772;TLX1..3_NFIC{dimer}:1.02309557722;HOX{A4,D4}:1.01710113763;XCPE1{core}:0.993757970204;SOX17:0.985391125479;PRDM1:0.940722928395;TP53:0.931056218151;NFATC1..3:0.901885088459;IKZF1:0.883344048164;MTE{core}:0.841385179833;MYFfamily:0.813519366322;NANOG{mouse}:0.808865563382;GTF2A1,2:0.792480598255;MZF1:0.784050029707;SMAD1..7,9:0.78013828542;GTF2I:0.740514740163;FOXN1:0.735085847627;TOPORS:0.716664453658;HES1:0.692174731543;ZIC1..3:0.685183605264;ZNF238:0.677691889463;DBP:0.675096092409;NFE2L2:0.65624775262;ELK1,4_GABP{A,B1}:0.633530138999;SP1:0.611006431758;HOX{A6,A7,B6,B7}:0.581373598724;NR3C1:0.572238843609;CEBPA,B_DDIT3:0.529480402683;MAZ:0.527892033136;TFAP4:0.495309937388;CREB1:0.491928351849;PAX4:0.490400857968;ARID5B:0.490079151932;TLX2:0.44942441765;HAND1,2:0.444206736188;bHLH_family:0.421119113972;FOSL2:0.419484628466;PAX8:0.41944277025;BACH2:0.404247014643;PATZ1:0.399576152657;FOS_FOS{B,L1}_JUN{B,D}:0.396876979571;PAX5:0.395503099254;AIRE:0.393645282006;PAX1,9:0.382294254897;ZFP161:0.372891305527;PAX3,7:0.343023564042;GFI1B:0.338299014289;TFAP2B:0.275304412893;NKX2-2,8:0.256868997135;PAX2:0.254543096896;POU3F1..4:0.254269067068;TBP:0.252087131696;HOXA9_MEIS1:0.235380697157;MED-1{core}:0.222064143656;RREB1:0.218013201955;NRF1:0.217328274792;ADNP_IRX_SIX_ZHX:0.180020984746;TFCP2:0.178953314408;ATF4:0.151026182149;TFAP2{A,C}:0.14490297805;HIC1:0.144845245797;ZNF143:0.141438910151;ZBTB16:0.123370894419;SREBF1,2:0.114965717107;LHX3,4:0.0919087433723;NFE2:0.0774755463478;AR:0.039545368911;MYB:0.0259531963107;ZNF423:0.00794638738289;NFIX:0.0021209822401;NHLH1,2:-0.00842666941353;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0290580879835;BPTF:-0.0573680954623;ATF5_CREB3:-0.0770910685172;ZNF148:-0.0775185260475;ATF2:-0.0838721850013;HNF1A:-0.0961279438427;CDC5L:-0.100518230695;SOX2:-0.129762988504;RFX1:-0.22186572347;LMO2:-0.241941670289;RUNX1..3:-0.243819000966;REST:-0.247586489762;FOX{D1,D2}:-0.264652817163;STAT1,3:-0.282049725358;MEF2{A,B,C,D}:-0.29097574977;ONECUT1,2:-0.303601822781;JUN:-0.309123274846;LEF1_TCF7_TCF7L1,2:-0.321811034904;FOXD3:-0.390198822214;HBP1_HMGB_SSRP1_UBTF:-0.39198122105;IRF1,2:-0.398391216918;ETS1,2:-0.436348372313;CRX:-0.437323244213;POU6F1:-0.449564478668;NFKB1_REL_RELA:-0.450115370113;GFI1:-0.458929135474;ELF1,2,4:-0.472125699224;STAT2,4,6:-0.482791444151;YY1:-0.484873162172;SOX5:-0.492349274999;SPI1:-0.516306597923;FOXP1:-0.544263887297;EGR1..3:-0.545004809888;STAT5{A,B}:-0.589731762482;TFDP1:-0.635297240912;HNF4A_NR2F1,2:-0.644429929357;IRF7:-0.657263671275;TGIF1:-0.666391237458;NR1H4:-0.683949270004;ALX1:-0.69956280136;PRRX1,2:-0.715765040493;SOX{8,9,10}:-0.72690273831;SPIB:-0.759402015601;MTF1:-0.773824092185;GATA6:-0.775644978991;T:-0.784672025561;NFIL3:-0.803865125284;NFY{A,B,C}:-0.807085400751;E2F1..5:-0.808244897832;POU1F1:-0.839615881135;POU5F1:-0.849314491685;ZEB1:-0.868836110497;VSX1,2:-0.872581259196;FOXO1,3,4:-0.903978990159;PAX6:-0.904741869838;FOXA2:-0.919195532831;PDX1:-0.951881763192;SNAI1..3:-0.991825419833;CDX1,2,4:-1.01349114901;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.05006673256;RORA:-1.0506683996;PBX1:-1.08374927757;DMAP1_NCOR{1,2}_SMARC:-1.0882425754;RFX2..5_RFXANK_RFXAP:-1.10376306834;ESRRA:-1.19008877058;NANOG:-1.19263342775;FOXP3:-1.21188066755;RBPJ:-1.23202051241;NKX6-1,2:-1.24024744548;POU2F1..3:-1.27591741374;PITX1..3:-1.29064349311;NR6A1:-1.42162210151;IKZF2:-1.4241822431;FOXM1:-1.43045697902;CUX2:-1.44431520031;NKX2-3_NKX2-5:-1.54075737263;MYOD1:-1.5701840697;OCT4_SOX2{dimer}:-1.57924408194;BREu{core}:-1.63912484476;NR5A1,2:-1.74386878774;FOX{F1,F2,J1}:-1.83757761773;FOXQ1:-2.00240905396 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:14314-155D3;search_select_hide=table117:FF:14314-155D3 | |||
}} | }} | ||
Latest revision as of 19:06, 4 June 2020
| Name: | Smooth Muscle Cells - Aortic, donor0 (nuclear fraction) |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12402 |
| Sample type: | fractionations and perturbations |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | |||||||||||||||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12402
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12402
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.118 |
| 10 | 10 | 0.169 |
| 100 | 100 | 0.352 |
| 101 | 101 | 0.258 |
| 102 | 102 | 0.327 |
| 103 | 103 | 0.699 |
| 104 | 104 | 0.994 |
| 105 | 105 | 0.228 |
| 106 | 106 | 0.291 |
| 107 | 107 | 0.544 |
| 108 | 108 | 0.397 |
| 109 | 109 | 0.208 |
| 11 | 11 | 0.437 |
| 110 | 110 | 0.84 |
| 111 | 111 | 0.187 |
| 112 | 112 | 0.875 |
| 113 | 113 | 0.136 |
| 114 | 114 | 0.692 |
| 115 | 115 | 0.395 |
| 116 | 116 | 0.475 |
| 117 | 117 | 0.5 |
| 118 | 118 | 0.956 |
| 119 | 119 | 0.597 |
| 12 | 12 | 0.641 |
| 120 | 120 | 0.712 |
| 121 | 121 | 0.9 |
| 122 | 122 | 0.0586 |
| 123 | 123 | 8.98358e-4 |
| 124 | 124 | 0.0685 |
| 125 | 125 | 0.398 |
| 126 | 126 | 0.446 |
| 127 | 127 | 0.288 |
| 128 | 128 | 0.104 |
| 129 | 129 | 0.469 |
| 13 | 13 | 0.166 |
| 130 | 130 | 0.372 |
| 131 | 131 | 0.858 |
| 132 | 132 | 0.847 |
| 133 | 133 | 0.554 |
| 134 | 134 | 0.48 |
| 135 | 135 | 0.301 |
| 136 | 136 | 0.604 |
| 137 | 137 | 0.972 |
| 138 | 138 | 0.607 |
| 139 | 139 | 0.618 |
| 14 | 14 | 0.216 |
| 140 | 140 | 0.329 |
| 141 | 141 | 0.597 |
| 142 | 142 | 0.761 |
| 143 | 143 | 0.602 |
| 144 | 144 | 0.916 |
| 145 | 145 | 0.392 |
| 146 | 146 | 0.0238 |
| 147 | 147 | 0.0592 |
| 148 | 148 | 0.455 |
| 149 | 149 | 0.125 |
| 15 | 15 | 0.104 |
| 150 | 150 | 0.411 |
| 151 | 151 | 0.719 |
| 152 | 152 | 0.584 |
| 153 | 153 | 0.912 |
| 154 | 154 | 0.678 |
| 155 | 155 | 0.094 |
| 156 | 156 | 0.156 |
| 157 | 157 | 0.859 |
| 158 | 158 | 0.0923 |
| 159 | 159 | 0.551 |
| 16 | 16 | 0.308 |
| 160 | 160 | 0.054 |
| 161 | 161 | 0.497 |
| 162 | 162 | 0.822 |
| 163 | 163 | 0.263 |
| 164 | 164 | 0.117 |
| 165 | 165 | 0.293 |
| 166 | 166 | 0.163 |
| 167 | 167 | 0.327 |
| 168 | 168 | 0.497 |
| 169 | 169 | 0.827 |
| 17 | 17 | 0.795 |
| 18 | 18 | 0.534 |
| 19 | 19 | 0.587 |
| 2 | 2 | 0.874 |
| 20 | 20 | 0.683 |
| 21 | 21 | 0.993 |
| 22 | 22 | 0.963 |
| 23 | 23 | 0.532 |
| 24 | 24 | 0.338 |
| 25 | 25 | 0.095 |
| 26 | 26 | 0.676 |
| 27 | 27 | 0.319 |
| 28 | 28 | 0.339 |
| 29 | 29 | 0.769 |
| 3 | 3 | 0.586 |
| 30 | 30 | 0.608 |
| 31 | 31 | 0.996 |
| 32 | 32 | 5.16482e-11 |
| 33 | 33 | 0.217 |
| 34 | 34 | 0.463 |
| 35 | 35 | 0.682 |
| 36 | 36 | 0.00494 |
| 37 | 37 | 0.986 |
| 38 | 38 | 0.256 |
| 39 | 39 | 0.808 |
| 4 | 4 | 0.133 |
| 40 | 40 | 0.0146 |
| 41 | 41 | 0.0941 |
| 42 | 42 | 0.17 |
| 43 | 43 | 0.295 |
| 44 | 44 | 0.694 |
| 45 | 45 | 0.312 |
| 46 | 46 | 0.543 |
| 47 | 47 | 0.151 |
| 48 | 48 | 0.37 |
| 49 | 49 | 0.05 |
| 5 | 5 | 0.441 |
| 50 | 50 | 0.622 |
| 51 | 51 | 0.266 |
| 52 | 52 | 0.551 |
| 53 | 53 | 0.112 |
| 54 | 54 | 0.288 |
| 55 | 55 | 0.415 |
| 56 | 56 | 0.311 |
| 57 | 57 | 0.574 |
| 58 | 58 | 0.264 |
| 59 | 59 | 0.762 |
| 6 | 6 | 0.751 |
| 60 | 60 | 0.331 |
| 61 | 61 | 0.463 |
| 62 | 62 | 0.125 |
| 63 | 63 | 0.815 |
| 64 | 64 | 0.185 |
| 65 | 65 | 0.561 |
| 66 | 66 | 0.0691 |
| 67 | 67 | 0.571 |
| 68 | 68 | 0.748 |
| 69 | 69 | 0.949 |
| 7 | 7 | 0.055 |
| 70 | 70 | 0.271 |
| 71 | 71 | 0.711 |
| 72 | 72 | 0.133 |
| 73 | 73 | 0.556 |
| 74 | 74 | 0.212 |
| 75 | 75 | 0.587 |
| 76 | 76 | 0.95 |
| 77 | 77 | 0.689 |
| 78 | 78 | 0.0978 |
| 79 | 79 | 0.0605 |
| 8 | 8 | 0.242 |
| 80 | 80 | 0.398 |
| 81 | 81 | 0.371 |
| 82 | 82 | 0.87 |
| 83 | 83 | 0.139 |
| 84 | 84 | 0.166 |
| 85 | 85 | 0.928 |
| 86 | 86 | 0.71 |
| 87 | 87 | 0.877 |
| 88 | 88 | 0.73 |
| 89 | 89 | 0.472 |
| 9 | 9 | 0.9 |
| 90 | 90 | 0.245 |
| 91 | 91 | 0.893 |
| 92 | 92 | 0.677 |
| 93 | 93 | 0.839 |
| 94 | 94 | 0.674 |
| 95 | 95 | 0.533 |
| 96 | 96 | 0.174 |
| 97 | 97 | 0.284 |
| 98 | 98 | 0.0243 |
| 99 | 99 | 0.237 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12402
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000672 human Smooth Muscle Cells - Aortic, nuclear fraction sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002539 (aortic smooth muscle cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001135 (smooth muscle tissue)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0002385 (muscle tissue)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0004237 (blood vessel smooth muscle)
0004695 (arterial system smooth muscle)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0002111 (artery smooth muscle tissue)
0007798 (vascular system)
0001015 (musculature)
0004178 (aorta smooth muscle tissue)
0002204 (musculoskeletal system)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0000383 (musculature of body)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000408 (cellular fractionation sample)
0000350 (experimentally modified sample)
0000168 (human aortic smooth muscle cell sample)
0000406 (nuclear fraction sample)
0000672 (human Smooth Muscle Cells - Aortic, nuclear fraction sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
