FFCP PHASE1:Hg19::chr11:36619771..36619793,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5897 | |EntrezGene=5897 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9832 | |HGNC=9832 | ||
|TSSclassifier=strong | |||
|UniProt=P55895,E9PQB9 | |UniProt=P55895,E9PQB9 | ||
|association_with_transcript=0bp_to_ENST00000311485,ENST00000524423,ENST00000527033,ENST00000530276,ENST00000532616,ENST00000534379_5end | |association_with_transcript=0bp_to_ENST00000311485,ENST00000524423,ENST00000527033,ENST00000530276,ENST00000532616,ENST00000534379_5end | ||
|cluster_id=chr11:36619771..36619793,- | |||
|coexpression_cluster_id=C28 | |||
|description=CAGE_peak_1_at_RAG2_5end | |description=CAGE_peak_1_at_RAG2_5end | ||
|id=chr11:36619771..36619793,- | |id=chr11:36619771..36619793,- | ||
|ontology_enrichment_celltype=CL:0000817!2.47e-07!3 | |ontology_enrichment_celltype=CL:0000817!2.47e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000817;1.89e-09;1!CL:0000037;5.75e-09;1!CL:0001024;5.75e-09;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0001024,5.75e-09,1 | |||
|ontology_enrichment_development_v019=UBERON:0005425;9.53e-09;1 | |||
|ontology_enrichment_disease=DOID:2531!3.25e-13!51;DOID:0060083!3.25e-13!51;DOID:1240!1.48e-10!39 | |ontology_enrichment_disease=DOID:2531!3.25e-13!51;DOID:0060083!3.25e-13!51;DOID:1240!1.48e-10!39 | ||
|ontology_enrichment_disease_v019=DOID:1240;1.97e-11;39!DOID:2531;7.36e-10;51!DOID:0060083;7.36e-10;51!DOID:8552;9.53e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,1.87e-16,51;DOID:0060083,1.87e-16,51;DOID:1240,1.13e-14,39;DOID:8552,1.07e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0005162!4.21e-10!2;UBERON:0000122!4.21e-10!2;UBERON:0006947!2.47e-07!3;UBERON:0004054!2.47e-07!3;UBERON:0004177!5.65e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;2.81e-17;2!UBERON:0005058;2.81e-17;2!UBERON:0009113;2.81e-17;2!UBERON:0004177;8.53e-15;5!UBERON:0005057;8.53e-15;5!UBERON:0006947;4.78e-11;3!UBERON:0004054;4.78e-11;3!UBERON:0001301;4.54e-09;1!UBERON:0001000;9.53e-09;1!UBERON:0000941;9.53e-09;1!UBERON:0001785;9.53e-09;1!UBERON:0002464;9.53e-09;1!UBERON:0004904;9.53e-09;1!UBERON:0001021;9.53e-09;1!UBERON:0005352;9.53e-09;1!UBERON:0005904;1.67e-08;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006947,4.90e-11,3;UBERON:0004054,4.90e-11,3;UBERON:0004177,9.35e-11,7;UBERON:0005057,9.35e-11,7;UBERON:0002370,4.37e-09,4;UBERON:0005058,4.37e-09,4;UBERON:0009113,4.37e-09,4;UBERON:0003295,4.37e-09,4;UBERON:0005562,4.37e-09,4;UBERON:0001301,4.54e-09,1;UBERON:0000941,8.49e-09,1;UBERON:0001785,8.49e-09,1;UBERON:0002464,8.49e-09,1;UBERON:0004904,8.49e-09,1;UBERON:0001021,8.49e-09,1;UBERON:0003902,8.49e-09,1;UBERON:0005425,8.49e-09,1;UBERON:0001000,9.91e-09,1;UBERON:0005352,9.91e-09,1;UBERON:0005904,1.70e-08,4;UBERON:0000974,9.10e-08,10;UBERON:0009722,4.69e-07,11;UBERON:0007690,4.69e-07,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.2327440841437,0,3.22960483268332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0,0,0,21.3341108667812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,33.9926586549281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,128.399599549036,88.5715949687756,1.27541018183058,0,0,0.211673582723883,0,0,55.4610270050657,0,0,7.11025466766734,0,0,0,0,0,0,0,0,0,2.46174797895425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,47.0089171700388,0,1.16348177330109,0,0,0,0,2.06617552674492,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0.182454789215666,0,0,1.18375320854817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.4836000945218,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.65013777824443,0,0,0,0,0,0.314408610199332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106691729694141,0,0,0,0,0,0,0,0,15.0709300704979,0,0,0,0,0,27.7593342404412,0,0,0,0.0642292250964595,0,0,0,0,0,0,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09279780251979,0,0,0,0,0,0,0,0,1.99819452718089,0,0,0,0,0.730336388246517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303114792872958,0,0,0,0,17.1406390653893,523.170169671649,277.039449902414,0,6.49201014437282,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0.122241444182866,0.813792356631477,0,39.0471159566591,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.2327440841437,0,3.22960483268332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0,0,0,21.3341108667812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,33.9926586549281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,128.399599549036,88.5715949687756,1.27541018183058,0,0,0.211673582723883,0,0,55.4610270050657,0,0,7.11025466766734,0,0,0,0,0,0,0,0,0,2.46174797895425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,47.0089171700388,0,1.16348177330109,0,0,0,0,2.06617552674492,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0.182454789215666,0,0,1.18375320854817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.4836000945218,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.65013777824443,0,0,0,0,0,0.314408610199332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106691729694141,0,0,0,0,0,0,0,0,15.0709300704979,0,0,0,0,0,27.7593342404412,0,0,0,0.0642292250964595,0,0,0,0,0,0,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09279780251979,0,0,0,0,0,0,0,0,1.99819452718089,0,0,0,0,0.730336388246517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303114792872958,0,0,0,0,17.1406390653893,523.170169671649,277.039449902414,0,6.49201014437282,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0.122241444182866,0.813792356631477,0,39.0471159566591,0 | ||
|short_description=p1@RAG2 | |short_description=p1@RAG2 | ||
}} | }} |
Latest revision as of 21:49, 17 September 2015
Short description: | p1@RAG2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RAG2_5end |
Coexpression cluster: | C28_thymus_acute_vein_Hodgkin_chronic_throat_Dendritic |
Association with transcript: | 0bp_to_ENST00000311485, ENST00000524423, ENST00000527033, ENST00000530276, ENST00000532616, ENST00000534379_5end |
EntrezGene: | RAG2 |
HGNC: | 9832 |
UniProt: | P55895E9PQB9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD34-positive, CD38-negative hematopoietic stem cell | 5.75e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
male genital duct | 4.90e-11 | 3 |
internal male genitalia | 4.90e-11 | 3 |
hemopoietic organ | 9.35e-11 | 7 |
immune organ | 9.35e-11 | 7 |
thymus | 4.37e-09 | 4 |
hemolymphoid system gland | 4.37e-09 | 4 |
thymic region | 4.37e-09 | 4 |
pharyngeal gland | 4.37e-09 | 4 |
thymus primordium | 4.37e-09 | 4 |
epididymis | 4.54e-09 | 1 |
cranial nerve II | 8.49e-09 | 1 |
cranial nerve | 8.49e-09 | 1 |
nerve trunk | 8.49e-09 | 1 |
nerve connecting eye with brain | 8.49e-09 | 1 |
nerve | 8.49e-09 | 1 |
retinal neural layer | 8.49e-09 | 1 |
presumptive neural retina | 8.49e-09 | 1 |
vas deferens | 9.91e-09 | 1 |
spermatic cord | 9.91e-09 | 1 |
duct of male reproductive system | 1.70e-08 | 4 |
neck | 9.10e-08 | 10 |
entire pharyngeal arch endoderm | 4.69e-07 | 11 |
early pharyngeal endoderm | 4.69e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 1.87e-16 | 51 |
immune system cancer | 1.87e-16 | 51 |
leukemia | 1.13e-14 | 39 |
chronic myeloid leukemia | 1.07e-08 | 1 |