FFCP PHASE1:Mm9::chr8:59934837..59934881,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=20284 | |EntrezGene=20284 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1202 | |||
|TSSclassifier=NA | |||
|UniProt=O88745,Q543T5 | |UniProt=O88745,Q543T5 | ||
|association_with_transcript=117bp_to_ENSMUST00000034023,NM_009136,uc009lst.1_5end | |association_with_transcript=117bp_to_ENSMUST00000034023,NM_009136,uc009lst.1_5end | ||
|cluster_id=chr8:59934837..59934881,+ | |||
|description=CAGE_peak_1_at_Scrg1_5end | |description=CAGE_peak_1_at_Scrg1_5end | ||
|id=chr8:59934837..59934881,+ | |id=chr8:59934837..59934881,+ | ||
|ontology_enrichment_celltype=CL:0002319!5.13e-17!43;CL:0000221!6.60e-17!44;CL:0000133!6.60e-17!44;CL:0000055!1.55e-13!50;CL:0000540!5.39e-12!33;CL:0000047!5.39e-12!33;CL:0000031!5.39e-12!33;CL:0000404!5.39e-12!33;CL:0000117!4.17e-10!23;CL:0000337!4.17e-10!23;CL:0000393!1.41e-09!39;CL:0000211!1.41e-09!39 | |ontology_enrichment_celltype=CL:0002319!5.13e-17!43;CL:0000221!6.60e-17!44;CL:0000133!6.60e-17!44;CL:0000055!1.55e-13!50;CL:0000540!5.39e-12!33;CL:0000047!5.39e-12!33;CL:0000031!5.39e-12!33;CL:0000404!5.39e-12!33;CL:0000117!4.17e-10!23;CL:0000337!4.17e-10!23;CL:0000393!1.41e-09!39;CL:0000211!1.41e-09!39 | ||
|ontology_enrichment_celltype_v019_2=CL:0002319,5.30e-19,43;CL:0000221,3.44e-18,44;CL:0000133,3.44e-18,44;CL:0000540,1.24e-13,33;CL:0000047,1.24e-13,33;CL:0000031,1.24e-13,33;CL:0000404,1.24e-13,33;CL:0000117,8.09e-12,23;CL:0000337,8.09e-12,23;CL:0000393,4.47e-11,39;CL:0000211,4.47e-11,39;CL:0002453,1.12e-07,8;CL:0002321,6.93e-07,70 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!2.56e-30!102;UBERON:0000924!2.56e-30!102;UBERON:0006601!2.56e-30!102;UBERON:0001017!1.85e-29!73;UBERON:0005743!1.85e-29!73;UBERON:0000073!2.18e-29!75;UBERON:0001016!2.18e-29!75;UBERON:0002346!1.40e-22!71;UBERON:0003075!1.40e-22!71;UBERON:0007284!1.40e-22!71;UBERON:0001049!9.24e-21!52;UBERON:0005068!9.24e-21!52;UBERON:0006241!9.24e-21!52;UBERON:0007135!9.24e-21!52;UBERON:0000955!2.87e-19!50;UBERON:0006238!2.87e-19!50;UBERON:0002616!1.16e-18!49;UBERON:0000033!3.79e-18!63;UBERON:0002020!6.15e-18!34;UBERON:0002791!7.57e-15!29;UBERON:0003528!7.57e-15!29;UBERON:0001893!7.57e-15!29;UBERON:0003056!3.83e-13!49;UBERON:0003080!3.84e-13!40;UBERON:0002780!1.19e-12!39;UBERON:0001890!1.19e-12!39;UBERON:0006240!1.19e-12!39;UBERON:0000956!5.44e-11!21;UBERON:0001869!5.44e-11!21;UBERON:0000203!5.44e-11!21;UBERON:0002619!2.71e-10!17;UBERON:0003076!7.77e-09!12;UBERON:0003057!7.77e-09!12;UBERON:0000153!1.33e-08!94;UBERON:0007811!9.73e-08!86;UBERON:0002021!5.47e-07!10;UBERON:0000411!5.47e-07!10;UBERON:0001950!5.47e-07!10 | |ontology_enrichment_uberon=UBERON:0004121!2.56e-30!102;UBERON:0000924!2.56e-30!102;UBERON:0006601!2.56e-30!102;UBERON:0001017!1.85e-29!73;UBERON:0005743!1.85e-29!73;UBERON:0000073!2.18e-29!75;UBERON:0001016!2.18e-29!75;UBERON:0002346!1.40e-22!71;UBERON:0003075!1.40e-22!71;UBERON:0007284!1.40e-22!71;UBERON:0001049!9.24e-21!52;UBERON:0005068!9.24e-21!52;UBERON:0006241!9.24e-21!52;UBERON:0007135!9.24e-21!52;UBERON:0000955!2.87e-19!50;UBERON:0006238!2.87e-19!50;UBERON:0002616!1.16e-18!49;UBERON:0000033!3.79e-18!63;UBERON:0002020!6.15e-18!34;UBERON:0002791!7.57e-15!29;UBERON:0003528!7.57e-15!29;UBERON:0001893!7.57e-15!29;UBERON:0003056!3.83e-13!49;UBERON:0003080!3.84e-13!40;UBERON:0002780!1.19e-12!39;UBERON:0001890!1.19e-12!39;UBERON:0006240!1.19e-12!39;UBERON:0000956!5.44e-11!21;UBERON:0001869!5.44e-11!21;UBERON:0000203!5.44e-11!21;UBERON:0002619!2.71e-10!17;UBERON:0003076!7.77e-09!12;UBERON:0003057!7.77e-09!12;UBERON:0000153!1.33e-08!94;UBERON:0007811!9.73e-08!86;UBERON:0002021!5.47e-07!10;UBERON:0000411!5.47e-07!10;UBERON:0001950!5.47e-07!10 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.49e-33,73;UBERON:0001016,8.02e-33,75;UBERON:0004121,4.95e-29,95;UBERON:0000924,4.95e-29,95;UBERON:0006601,4.95e-29,95;UBERON:0000073,5.92e-25,54;UBERON:0001049,1.16e-23,52;UBERON:0005068,1.16e-23,52;UBERON:0006241,1.16e-23,52;UBERON:0007135,1.16e-23,52;UBERON:0002346,7.86e-22,64;UBERON:0003075,7.86e-22,64;UBERON:0007284,7.86e-22,64;UBERON:0002020,3.19e-21,34;UBERON:0010371,3.29e-21,73;UBERON:0000955,8.65e-20,47;UBERON:0006238,8.65e-20,47;UBERON:0002616,4.36e-19,46;UBERON:0003528,1.65e-17,29;UBERON:0002791,1.65e-17,29;UBERON:0001893,1.65e-17,29;UBERON:0010314,4.48e-16,92;UBERON:0003080,1.23e-14,40;UBERON:0002780,4.70e-14,39;UBERON:0001890,4.70e-14,39;UBERON:0006240,4.70e-14,39;UBERON:0003056,1.31e-13,49;UBERON:0000956,7.04e-13,21;UBERON:0001869,7.04e-13,21;UBERON:0000203,7.04e-13,21;UBERON:0002619,4.83e-12,17;UBERON:0003076,2.70e-10,12;UBERON:0003057,2.70e-10,12;UBERON:0002021,4.42e-08,10;UBERON:0000411,4.42e-08,10;UBERON:0001950,4.42e-08,10 | |||
|phase1_expression=1.76163731815273,0,0.454999239389536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18.7095238332354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,68.8504383026274,98.3293455275814,135.546374747169,144.266985113118,53.0548537960124,57.5010257459886,0,0,0,1.54355661621568,0.286533439938757,2.57836046138721,4.85559506063035,2.64495489636016,5.07065122804943,2.03306719241479,2.66788438833342,0.449949858640699,0.988866362566974,0,167.17686166927,201.714610293816,1.24427534770173,4.05017814995072,2.94454945891935,175.961006392743,173.602673187968,6.1245399607477,4.02550978276593,8.27296907949019,58.361416929676,54.7778680385455,69.8909726315908,5.14356522147756,5.6722339033494,6.77187381723788,66.1663707633273,76.5357149643085,70.1343957295558,65.9968031461016,77.3078226739129,5.96478226640962,0.605809546665472,2.04043212288321,0,0,0,0,0,0,6.03911006566533,0,0,0,0.845060518660083,0,0,0,0,0,0,3.53970027129086,0,1.92974780784272,3.99016251562112,5.1759131313064,5.99600292865752,6.33035090321015,5.17390311397101,2.01066546127481,0,0.722996784599558,7.07688441559899,66.80970902828,18.7715290691335,29.0925151881133,0,76.4157880200138,75.4008144528438,0.255457055208591,0,0,0,43.5890760668034,80.5201060960783,29.4031183944103,75.0921063230634,73.1346207964745,51.3236470062113,97.9937228929256,0.203678727700633,18.1634177090736,0,2.94618598241064,0.260240885925407,0.229902104433473,0.540186389416048,1.35634336052144,1.76894897793452,1.66547836370305,2.06143794031403,9.57202471734358,0,1.13463648100692,3.87092473160687,18.6316372563439,10.8438427197983,26.1189124891625,30.8673204611915,0,0,0,0,0.414251545071004,0.469052119962192,1.80062061461015,0.946978942340841,0.590292695242212,0.771335564436891,0.697601834251224,1.3413670069981,0.467061369468678,0,0.164167464079095,0.0810688095458557,0.146199987425332,0.219550115291051,0,89.16293819119,32.0033344499575,0,1.32225283331772,0.213288250535234,1.16118335930219,0.257734922644187,0.201683524623343,0.667134131534611,0.570676878337677,0,1.64698954724011,1.25667604400135,0.795825888164603,0.779856348476481,0.898819408654221,0.648414149624083,0.199141273254367,0.379335801906163,0.228497025219458,0,0,0.193952487167626,0.210407459670956,0,0,0.156998727841375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0.947457058852424,0.325929952884052,1.01847051465113,0.234690248288502,0,0.714130922658041,0.390267295715598,0.157635144106191,0,0.478364305972461,0.81931657357869,3.28101465545202,0.578596234326046,0,0,0,0.551873492609465,68.8762031047628,115.336299606728,0,5.30188947129183,1.26203287766503,0.390438744296638,3.44677436372478,13.860190281248,12.9223230967789,18.1168979704853,4.04810701674894,5.84511715822624,5.92931666919785,66.5135124993141,0,0.534196811001766,0.81443479676788,0,0,0.242780636154981,0,0,0,0.307435147943927,0.258428293168221,0,0.356497378384721,0,0,0,0,0.720244376125241,0,0.857348140126369,0.177340233642274,0,1.81003922662333,3.95804433848979,0,0,0,3.13283880588812,1.13025098687134,4.04096597018644,2.74556391207214,4.92422699235184,0.582961673259701,137.400148789788,0,0.206386867963223,0.185194527369712,0,0,0,0,0,0,0,1.73984796469624,0.813277868507395,0.648032044930808,0.209088296014469,0,0.404593039154462,0.578574190077352,0.523511883968059,0.518459893167171,0,0,0,0,0,0,0,0,0,0.314578033277133,0,0.288030006257865,0,0,0.513554785824136,0,0,0.39736270956253,0,0,0.100966449948148,0,0.100826185136841,0.292373642219257,0,0,0.453460767230423,0,0,0,0.19318959403219,0,0,0,0,94.3135577170501,79.6362659157416,79.6324763680761,80.5991425191895,45.900528824633,43.8128460486026,48.60162001669,59.8927200288213,39.87653199061,31.583379016861,0.62272408550506,0.399024873401031,2.39027048055788,12.1553358534147,3.77303692730368,6.06683577885047,3.33370091702423,3.09052585858341,4.1719497246936,3.28506375292937,5.32306529769503,2.26351609663291,4.68207537349412,2.4969809437899,4.19278923375977,4.28664322154766,2.66533949673168,2.89363830695558,2.47251540481984,2.94397840268795,2.74295401908332,4.08194354166476,3.57654284920981,2.32554266611726,2.63506265162926,3.13074049199203,2.56099162021882,2.10455769150274,4.6173398707593,4.48913817326191,2.60997039873183,3.34915240076916,1.22769312950907,2.63392630016142,17.3615949883027,11.2414760072076,12.1644436391612,12.247650080753,75.750179499262,41.6917782135884,44.7504922747413 | |phase1_expression=1.76163731815273,0,0.454999239389536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18.7095238332354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,68.8504383026274,98.3293455275814,135.546374747169,144.266985113118,53.0548537960124,57.5010257459886,0,0,0,1.54355661621568,0.286533439938757,2.57836046138721,4.85559506063035,2.64495489636016,5.07065122804943,2.03306719241479,2.66788438833342,0.449949858640699,0.988866362566974,0,167.17686166927,201.714610293816,1.24427534770173,4.05017814995072,2.94454945891935,175.961006392743,173.602673187968,6.1245399607477,4.02550978276593,8.27296907949019,58.361416929676,54.7778680385455,69.8909726315908,5.14356522147756,5.6722339033494,6.77187381723788,66.1663707633273,76.5357149643085,70.1343957295558,65.9968031461016,77.3078226739129,5.96478226640962,0.605809546665472,2.04043212288321,0,0,0,0,0,0,6.03911006566533,0,0,0,0.845060518660083,0,0,0,0,0,0,3.53970027129086,0,1.92974780784272,3.99016251562112,5.1759131313064,5.99600292865752,6.33035090321015,5.17390311397101,2.01066546127481,0,0.722996784599558,7.07688441559899,66.80970902828,18.7715290691335,29.0925151881133,0,76.4157880200138,75.4008144528438,0.255457055208591,0,0,0,43.5890760668034,80.5201060960783,29.4031183944103,75.0921063230634,73.1346207964745,51.3236470062113,97.9937228929256,0.203678727700633,18.1634177090736,0,2.94618598241064,0.260240885925407,0.229902104433473,0.540186389416048,1.35634336052144,1.76894897793452,1.66547836370305,2.06143794031403,9.57202471734358,0,1.13463648100692,3.87092473160687,18.6316372563439,10.8438427197983,26.1189124891625,30.8673204611915,0,0,0,0,0.414251545071004,0.469052119962192,1.80062061461015,0.946978942340841,0.590292695242212,0.771335564436891,0.697601834251224,1.3413670069981,0.467061369468678,0,0.164167464079095,0.0810688095458557,0.146199987425332,0.219550115291051,0,89.16293819119,32.0033344499575,0,1.32225283331772,0.213288250535234,1.16118335930219,0.257734922644187,0.201683524623343,0.667134131534611,0.570676878337677,0,1.64698954724011,1.25667604400135,0.795825888164603,0.779856348476481,0.898819408654221,0.648414149624083,0.199141273254367,0.379335801906163,0.228497025219458,0,0,0.193952487167626,0.210407459670956,0,0,0.156998727841375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0.947457058852424,0.325929952884052,1.01847051465113,0.234690248288502,0,0.714130922658041,0.390267295715598,0.157635144106191,0,0.478364305972461,0.81931657357869,3.28101465545202,0.578596234326046,0,0,0,0.551873492609465,68.8762031047628,115.336299606728,0,5.30188947129183,1.26203287766503,0.390438744296638,3.44677436372478,13.860190281248,12.9223230967789,18.1168979704853,4.04810701674894,5.84511715822624,5.92931666919785,66.5135124993141,0,0.534196811001766,0.81443479676788,0,0,0.242780636154981,0,0,0,0.307435147943927,0.258428293168221,0,0.356497378384721,0,0,0,0,0.720244376125241,0,0.857348140126369,0.177340233642274,0,1.81003922662333,3.95804433848979,0,0,0,3.13283880588812,1.13025098687134,4.04096597018644,2.74556391207214,4.92422699235184,0.582961673259701,137.400148789788,0,0.206386867963223,0.185194527369712,0,0,0,0,0,0,0,1.73984796469624,0.813277868507395,0.648032044930808,0.209088296014469,0,0.404593039154462,0.578574190077352,0.523511883968059,0.518459893167171,0,0,0,0,0,0,0,0,0,0.314578033277133,0,0.288030006257865,0,0,0.513554785824136,0,0,0.39736270956253,0,0,0.100966449948148,0,0.100826185136841,0.292373642219257,0,0,0.453460767230423,0,0,0,0.19318959403219,0,0,0,0,94.3135577170501,79.6362659157416,79.6324763680761,80.5991425191895,45.900528824633,43.8128460486026,48.60162001669,59.8927200288213,39.87653199061,31.583379016861,0.62272408550506,0.399024873401031,2.39027048055788,12.1553358534147,3.77303692730368,6.06683577885047,3.33370091702423,3.09052585858341,4.1719497246936,3.28506375292937,5.32306529769503,2.26351609663291,4.68207537349412,2.4969809437899,4.19278923375977,4.28664322154766,2.66533949673168,2.89363830695558,2.47251540481984,2.94397840268795,2.74295401908332,4.08194354166476,3.57654284920981,2.32554266611726,2.63506265162926,3.13074049199203,2.56099162021882,2.10455769150274,4.6173398707593,4.48913817326191,2.60997039873183,3.34915240076916,1.22769312950907,2.63392630016142,17.3615949883027,11.2414760072076,12.1644436391612,12.247650080753,75.750179499262,41.6917782135884,44.7504922747413 | ||
|short_description=p1@Scrg1 | |short_description=p1@Scrg1 | ||
}} | }} |
Latest revision as of 15:37, 25 September 2015
Short description: | p1@Scrg1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Scrg1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1202 |
Association with transcript: | 117bp_to_ENSMUST00000034023, NM_009136, uc009lst.1_5end |
EntrezGene: | Scrg1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 5.30e-19 | 43 |
ectodermal cell | 3.44e-18 | 44 |
neurectodermal cell | 3.44e-18 | 44 |
neuron | 1.24e-13 | 33 |
neuronal stem cell | 1.24e-13 | 33 |
neuroblast | 1.24e-13 | 33 |
electrically signaling cell | 1.24e-13 | 33 |
CNS neuron (sensu Vertebrata) | 8.09e-12 | 23 |
neuroblast (sensu Vertebrata) | 8.09e-12 | 23 |
electrically responsive cell | 4.47e-11 | 39 |
electrically active cell | 4.47e-11 | 39 |
oligodendrocyte precursor cell | 1.12e-07 | 8 |
embryonic cell | 6.93e-07 | 70 |